prot_E-siliculosus-1a_M_contig87.16706.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig87.16706.1
Unique Nameprot_E-siliculosus-1a_M_contig87.16706.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length508
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig87.16706.1 vs. uniprot
Match: A0A6H5L4Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q4_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 6.450e-47
Identity = 86/96 (89.58%), Postives = 88/96 (91.67%), Query Frame = 0 
Query:  347 LGILLCQDNHLSIDTLIEIDYAMGRPKRPVRDLVGQVQRSIDSQNFLSKGVETVQQTKATCVPQGGEPSVKLAPGQETSIQVSFGRKDNIIGSIRV 442
            LGILLCQDNHLS DTLIEIDYAM RPKRPVRDLVGQVQRSID+QNFLSKGVET QQTK   VP GGEPSV+LAPGQETSIQVSFGRKDNIIGSI V
Sbjct:   11 LGILLCQDNHLSADTLIEIDYAMARPKRPVRDLVGQVQRSIDTQNFLSKGVETGQQTKVAGVPHGGEPSVQLAPGQETSIQVSFGRKDNIIGSIPV 106
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BLAST of mRNA_E-siliculosus-1a_M_contig87.16706.1 vs. uniprot
Match: F0YJL1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJL1_AURAN)

HSP 1 Score: 63.2 bits (152), Expect = 6.190e-7
Identity = 31/90 (34.44%), Postives = 53/90 (58.89%), Query Frame = 0 
Query:  416 VKLAPGQETSIQVSFGRKDNIIGSIRVTNETCLDEARALIDPLLRCSERAYGFLSTMGG-VIPPEDEQARRVVWDCKAPVRLRPASWVAI 504
            + L P Q  ++QVS+GR+ N+IG++R +  T L E R LI   L  ++ +Y  ++  G    P  +E  R V+ DC   ++LRP++W+ +
Sbjct:  391 ILLHPDQNANVQVSYGRRPNVIGNLRCSATTSLAEMRYLITKNLSLADESYLMIAHDGTRAFPRHEEDKRHVLLDCGHNLQLRPSTWLTL 480
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BLAST of mRNA_E-siliculosus-1a_M_contig87.16706.1 vs. uniprot
Match: D7FW80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW80_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 3.640e-6
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0 
Query:   80 VPLLRSDGTGISTIRALSLKRCGIGDAG 107
            +PLLRSDGTGISTIRALSLKRCGIGDAG
Sbjct:    1 MPLLRSDGTGISTIRALSLKRCGIGDAG 28
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig87.16706.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4Q4_9PHAE6.450e-4789.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YJL1_AURAN6.190e-734.44Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
D7FW80_ECTSI3.640e-696.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 148..175
e-value: 0.72
score: 18.1
coord: 90..117
e-value: 0.18
score: 20.9
coord: 316..343
e-value: 13.0
score: 9.2
coord: 288..315
e-value: 0.15
score: 21.1
coord: 176..203
e-value: 2.7
score: 14.1
coord: 118..145
e-value: 18.0
score: 8.3
coord: 232..259
e-value: 0.0063
score: 25.7
coord: 260..287
e-value: 1.1
score: 17.0
coord: 29..56
e-value: 130.0
score: 2.1
coord: 204..231
e-value: 0.84
score: 17.7
NoneNo IPR availablePANTHERPTHR24107FAMILY NOT NAMEDcoord: 151..386
coord: 31..208
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 15..373
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 3..90
e-value: 4.0E-7
score: 31.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 91..144
e-value: 1.0E-11
score: 46.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 146..403
e-value: 6.9E-47
score: 161.7
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 91..112
e-value: 0.0012
score: 18.8
coord: 232..254
e-value: 0.0012
score: 18.8
coord: 315..327
e-value: 1.2
score: 9.3
coord: 179..194
e-value: 0.15
score: 12.2
coord: 291..310
e-value: 0.1
score: 12.7
coord: 118..139
e-value: 0.0011
score: 18.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig87contigE-siliculosus-1a_M_contig87:36909..41541 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig87.16706.1mRNA_E-siliculosus-1a_M_contig87.16706.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig87 36909..41541 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig87.16706.1 ID=prot_E-siliculosus-1a_M_contig87.16706.1|Name=mRNA_E-siliculosus-1a_M_contig87.16706.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=508bp
MPRNMELHDRDKIFDGTAVRKLAQTWSKDPHFSSLNLSAHNIGAGAAETL
ATILRERSSTTSVDCSLNPDLKDEGARLLVPLLRSDGTGISTIRALSLKR
CGIGDAGATALAQGLLGNAVLEQLNLTGNLIGDAGAIAIVDSAVGPSGGF
LLDLWLSSNRVGVAGAEGMAAALAKSPALRELHLSGNSLGNAGVPTLVKG
AVAGRRLRGLYVGGCGVSDNGAKEIANALQTSLHLETLCLGHNTIGNDGA
SALARVLADNHALRRLLLPFNLLKAAGGKAIAAMLLSNDALLSLDISNNR
LGATGLAALATAIAKNSTLLELDLSGCEGTDTSFRAVARAVEANNTLGIL
LCQDNHLSIDTLIEIDYAMGRPKRPVRDLVGQVQRSIDSQNFLSKGVETV
QQTKATCVPQGGEPSVKLAPGQETSIQVSFGRKDNIIGSIRVTNETCLDE
ARALIDPLLRCSERAYGFLSTMGGVIPPEDEQARRVVWDCKAPVRLRPAS
WVAIRHV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf