mRNA_E-siliculosus-1a_M_contig869.16703.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig869.16703.1
Unique NamemRNA_E-siliculosus-1a_M_contig869.16703.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: D1J7D0_ECTSI (Ferredoxin:thioredoxin reductase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7D0_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 5.660e-40
Identity = 80/123 (65.04%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*F-------NVLAEIVKLN*IFDMS-CVA--KRKECHCKLFVMT*KFRGITNSKIPYTLS*FNI 339
            MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK         N  +E V++   F +  CVA  +RKECHCKLFV           KIP +    N+
Sbjct:    1 MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNKYDLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPENSESSQTQKIPLSTVYHNL 123          
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A5A4MHM1_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MHM1_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 7.400e-31
Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*F-------NVLAEIVKLN*IFDMS-CVA--KRKECHCKLFVMT*KFRGITNSKIPYTLS*FNI 339
            M LK TKKV   NKL+KGTRIKEMH+FAELYAKKTNTFFC+DPSITSVI++GLADYK +         N  +E V++   F +  CVA  +RKECHCKLFV           KIP +    N+
Sbjct:    1 MDLKNTKKVAQKNKLEKGTRIKEMHNFAELYAKKTNTFFCLDPSITSVIISGLADYKERYELPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPEDPDASQTQKIPLSTVYHNL 123          
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A1I9LVX2_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX2_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.490e-30
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1
Query:    1 MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*F-------NVLAEIVKLN*IFDMS-CVA--KRKECHCKLFV 273
            M LKK K  T NNK++K TR+KEMH+FAELYAKKTNTFFC+DPSITSVI+AGLADYKNK         N  +E V++   F +  CVA  +RKECHCKLFV
Sbjct:    1 MELKKIKNTTQNNKIEKSTRLKEMHNFAELYAKKTNTFFCLDPSITSVIIAGLADYKNKYKLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFV 101          
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A6B7EW12_9PHAE (Ferredoxin:thioredoxin reductase n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EW12_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.140e-27
Identity = 65/123 (52.85%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*F-------NVLAEIVKLN*IFDMS-CVA--KRKECHCKLFVMT*KFRGITNSKIPYTLS*FNI 339
            M LKKT K+    K+DKGT IKEMH F+ELYA+KTNTFFC+DPSITSVI+AGLADYK K         N  +E V++   F +  CVA  +RKECHCKLFV           KIP +    N+
Sbjct:    1 MDLKKTTKLA-QKKIDKGTYIKEMHTFSELYAQKTNTFFCLDPSITSVIIAGLADYKEKYALPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNL 122          
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A0S0GLW6_COSCS (Ferredoxin-thioredoxin reductase, catalytic chain n=28 Tax=Laminariales TaxID=2886 RepID=A0A0S0GLW6_COSCS)

HSP 1 Score: 84.0 bits (206), Expect = 1.320e-18
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   58 RIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKN---------K*FNVLAEIVKLN*IFDMSCVA--KRKECHCKLFV 273
            R+KEMH+FAE+YAK+TNTFFC+DPSITSVI+ GLA YK+         + F      ++LN  +   CV+  +RKECHCKLFV
Sbjct:   12 RLKEMHNFAEIYAKQTNTFFCLDPSITSVIITGLATYKDQYGVPLCPCRNFRSEKAEIELN-YWVCPCVSMRERKECHCKLFV 93          
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A8F0JXX6_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0JXX6_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.140e-17
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   61 IKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*---------FNVLAEIVKLN*IFDMSCVA--KRKECHCKLFV 273
            +KEMH FA++YAK+TNTFFC+DPSITSVI+ GLA YK+K          F      ++LN  +   CV+  +RKECHCKLFV
Sbjct:   13 LKEMHTFAQIYAKQTNTFFCLDPSITSVIITGLATYKDKHGVPLCPCRNFRSEKAEIELN-YWVCPCVSMRERKECHCKLFV 93          
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A8F0FAQ0_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAQ0_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.720e-16
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   61 IKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*----------FNVLAEIVKLN*IFDMSCVA--KRKECHCKLFV 273
            +  MH FAE YAK+TNTFFC DPSITS+++ GLA YK+K           +N  AEI +LN  +   CVA  +RKECHCKLF+
Sbjct:   13 VNAMHKFAETYAKQTNTFFCFDPSITSIVITGLATYKDKYGVPLCPCRNYYNEEAEI-ELN-YWICPCVAMRERKECHCKLFI 93          
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A2R4QPY4_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPY4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.380e-15
Identity = 43/94 (45.74%), Postives = 55/94 (58.51%), Query Frame = 1
Query:   61 IKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*----------FNVLAEIVKLN*IFDMSCVAKRKECHCKLFVMT*KFRGITNSKI 312
            IK M HFAE YAK+TNTFF +DPSITS+I+ GLA+YK++            N  AEI     I     + +RKECHC+LFV   +     + KI
Sbjct:   13 IKAMQHFAETYAKQTNTFFSIDPSITSIIITGLANYKDRYKVPLCPCRNYHNEEAEIELNYWICPCVSMRERKECHCRLFVQPTESYASQSQKI 106          
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A8E6D4Y1_9PHAE (Ferredoxin-thioredoxin reductase beta subunit n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4Y1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 9.100e-15
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   61 IKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*F-------NVLAEIVKLN*IFDMS-CVA--KRKECHCKLFVMT*KFRGITNSKI 312
            +K MH FAE YAKKTNTFFCVDPS+T V++ GL+ YK K         N   E  +L+  + +  CVA  +R+ECHCKLF+ +       N +I
Sbjct:   19 LKAMHKFAETYAKKTNTFFCVDPSVTCVVIKGLSVYKEKYGLPLCPCRNYENEEAELDSTYWLCPCVAMRERRECHCKLFLTSDDREASHNQEI 112          
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A141BSI2_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSI2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.130e-14
Identity = 43/94 (45.74%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   61 IKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*----------FNVLAEIVKLN*IFDMSCVAKRKECHCKLFVMT*KFRGITNSKI 312
            IK M  FAE YAK+TNTFF +DPSITS+I+ GLA YK++            N  AEI     I     + +RKECHCKLFV   +     + KI
Sbjct:   13 IKAMQQFAETYAKQTNTFFSLDPSITSIIITGLATYKDRHKVPLCPCRNYHNEEAEIELNYWICPCISMRERKECHCKLFVQPTESYASKSQKI 106          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J7D0_ECTSI5.660e-4065.04Ferredoxin:thioredoxin reductase n=2 Tax=Ectocarpu... [more]
A0A5A4MHM1_9PHAE7.400e-3155.28Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A1I9LVX2_9PHAE1.490e-3063.37Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A6B7EW12_9PHAE3.140e-2752.85Ferredoxin:thioredoxin reductase n=1 Tax=Cladosiph... [more]
A0A0S0GLW6_COSCS1.320e-1854.22Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A8F0JXX6_9PHAE2.140e-1753.66Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A8F0FAQ0_9PHAE1.720e-1653.01Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A2R4QPY4_9PHAE1.380e-1545.74Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A8E6D4Y1_9PHAE9.100e-1545.74Ferredoxin-thioredoxin reductase beta subunit n=1 ... [more]
A0A141BSI2_9PHAE3.130e-1445.74Ferredoxin-thioredoxin reductase, catalytic chain ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig869contigE-siliculosus-1a_M_contig869:5376..5727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size180
Model size352
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0016491,GO:0016730,GO:0022900,GO:0030385,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114
KEGG koko:K17892
Preferred nameFtrB
Seed eggNOG ortholog2880.D1J7D0
Seed ortholog evalue1.5e-25
Seed ortholog score121.3
Taxonomic scopeEukaryota
BRITEko00000,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EC1.8.7.2
EggNOG OGs2RZRI@2759,COG4802@1
EggNOG free text desc.ferredoxin:thioredoxin reductase activity
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936321.5186746-UTR-E-siliculosus-1a_M_contig869:5375..55471622936321.5186746-UTR-E-siliculosus-1a_M_contig869:5375..5547Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig869 5376..5547 -
1696251024.5799835-UTR-E-siliculosus-1a_M_contig869:5375..55471696251024.5799835-UTR-E-siliculosus-1a_M_contig869:5375..5547Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig869 5376..5547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936321.5352051-CDS-E-siliculosus-1a_M_contig869:5547..57271622936321.5352051-CDS-E-siliculosus-1a_M_contig869:5547..5727Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig869 5548..5727 -
1696251024.6024978-CDS-E-siliculosus-1a_M_contig869:5547..57271696251024.6024978-CDS-E-siliculosus-1a_M_contig869:5547..5727Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig869 5548..5727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig869.16703.1prot_E-siliculosus-1a_M_contig869.16703.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig869 5548..5727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig869.16703.1

>prot_E-siliculosus-1a_M_contig869.16703.1 ID=prot_E-siliculosus-1a_M_contig869.16703.1|Name=mRNA_E-siliculosus-1a_M_contig869.16703.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=60bp
MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIV
AGLADYKNK*
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mRNA from alignment at E-siliculosus-1a_M_contig869:5376..5727-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig869.16703.1 ID=mRNA_E-siliculosus-1a_M_contig869.16703.1|Name=mRNA_E-siliculosus-1a_M_contig869.16703.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=352bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig869:5376..5727- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACTTTAAAAAAGACTAAAAAAGTAACCCTAAATAATAAGCTCGACAA AGGTACTCGTATAAAAGAAATGCATCATTTTGCAGAACTTTATGCTAAAA AAACTAATACATTTTTTTGCGTTGATCCTTCAATTACTTCAGTAATAGTT GCCGGATTAGCTGATTATAAAAATAAATAATTTAATGTCCTTGCAGAAAT CGTGAAATTGAATTAAATTTTTGATATGTCCTGTGTTGCTAAAAGAAAAG AATGTCATTGCAAGCTATTTGTAATGACCTGAAAATTCAGAGGCATCACA AACTCAAAAATTCCTTATACATTATCATAATTTAATATATAATTTATATA CT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig869:5376..5727-

>mRNA_E-siliculosus-1a_M_contig869.16703.1 ID=mRNA_E-siliculosus-1a_M_contig869.16703.1|Name=mRNA_E-siliculosus-1a_M_contig869.16703.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=360bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig869:5376..5727- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACTTTAAAAAAGACTAAAAAAGTAACCCTAAATAATAAGCTCGACAA
AGGTACTCGTATAAAAGAAATGCATCATTTTGCAGAACTTTATGCTAAAA
AAACTAATACATTTTTTTGCGTTGATCCTTCAATTACTTCAGTAATAGTT
GCCGGATTAGCTGATTATAAAAATAAATAAATGACTTTAAAAAAGACTAA
AAAAGTAACCCTAAATAATAAGCTCGACAAAGGTACTCGTATAAAAGAAA
TGCATCATTTTGCAGAACTTTATGCTAAAAAAACTAATACATTTTTTTGC
GTTGATCCTTCAATTACTTCAGTAATAGTTGCCGGATTAGCTGATTATAA
AAATAAATAA
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