mRNA_E-siliculosus-1a_M_contig869.16703.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: D1J7D0_ECTSI (Ferredoxin:thioredoxin reductase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7D0_ECTSI) HSP 1 Score: 138 bits (348), Expect = 5.660e-40 Identity = 80/123 (65.04%), Postives = 87/123 (70.73%), Query Frame = 1
Query: 1 MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*F-------NVLAEIVKLN*IFDMS-CVA--KRKECHCKLFVMT*KFRGITNSKIPYTLS*FNI 339
MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK N +E V++ F + CVA +RKECHCKLFV KIP + N+
Sbjct: 1 MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNKYDLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPENSESSQTQKIPLSTVYHNL 123
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A5A4MHM1_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MHM1_9PHAE) HSP 1 Score: 115 bits (288), Expect = 7.400e-31 Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 1
Query: 1 MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*F-------NVLAEIVKLN*IFDMS-CVA--KRKECHCKLFVMT*KFRGITNSKIPYTLS*FNI 339
M LK TKKV NKL+KGTRIKEMH+FAELYAKKTNTFFC+DPSITSVI++GLADYK + N +E V++ F + CVA +RKECHCKLFV KIP + N+
Sbjct: 1 MDLKNTKKVAQKNKLEKGTRIKEMHNFAELYAKKTNTFFCLDPSITSVIISGLADYKERYELPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPEDPDASQTQKIPLSTVYHNL 123
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A1I9LVX2_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX2_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.490e-30 Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1
Query: 1 MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*F-------NVLAEIVKLN*IFDMS-CVA--KRKECHCKLFV 273
M LKK K T NNK++K TR+KEMH+FAELYAKKTNTFFC+DPSITSVI+AGLADYKNK N +E V++ F + CVA +RKECHCKLFV
Sbjct: 1 MELKKIKNTTQNNKIEKSTRLKEMHNFAELYAKKTNTFFCLDPSITSVIIAGLADYKNKYKLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFV 101
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A6B7EW12_9PHAE (Ferredoxin:thioredoxin reductase n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EW12_9PHAE) HSP 1 Score: 106 bits (264), Expect = 3.140e-27 Identity = 65/123 (52.85%), Postives = 78/123 (63.41%), Query Frame = 1
Query: 1 MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*F-------NVLAEIVKLN*IFDMS-CVA--KRKECHCKLFVMT*KFRGITNSKIPYTLS*FNI 339
M LKKT K+ K+DKGT IKEMH F+ELYA+KTNTFFC+DPSITSVI+AGLADYK K N +E V++ F + CVA +RKECHCKLFV KIP + N+
Sbjct: 1 MDLKKTTKLA-QKKIDKGTYIKEMHTFSELYAQKTNTFFCLDPSITSVIIAGLADYKEKYALPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNL 122
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A0S0GLW6_COSCS (Ferredoxin-thioredoxin reductase, catalytic chain n=28 Tax=Laminariales TaxID=2886 RepID=A0A0S0GLW6_COSCS) HSP 1 Score: 84.0 bits (206), Expect = 1.320e-18 Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 58 RIKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKN---------K*FNVLAEIVKLN*IFDMSCVA--KRKECHCKLFV 273
R+KEMH+FAE+YAK+TNTFFC+DPSITSVI+ GLA YK+ + F ++LN + CV+ +RKECHCKLFV
Sbjct: 12 RLKEMHNFAEIYAKQTNTFFCLDPSITSVIITGLATYKDQYGVPLCPCRNFRSEKAEIELN-YWVCPCVSMRERKECHCKLFV 93
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A8F0JXX6_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0JXX6_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 2.140e-17 Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 61 IKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*---------FNVLAEIVKLN*IFDMSCVA--KRKECHCKLFV 273
+KEMH FA++YAK+TNTFFC+DPSITSVI+ GLA YK+K F ++LN + CV+ +RKECHCKLFV
Sbjct: 13 LKEMHTFAQIYAKQTNTFFCLDPSITSVIITGLATYKDKHGVPLCPCRNFRSEKAEIELN-YWVCPCVSMRERKECHCKLFV 93
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A8F0FAQ0_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAQ0_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 1.720e-16 Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 61 IKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*----------FNVLAEIVKLN*IFDMSCVA--KRKECHCKLFV 273
+ MH FAE YAK+TNTFFC DPSITS+++ GLA YK+K +N AEI +LN + CVA +RKECHCKLF+
Sbjct: 13 VNAMHKFAETYAKQTNTFFCFDPSITSIVITGLATYKDKYGVPLCPCRNYYNEEAEI-ELN-YWICPCVAMRERKECHCKLFI 93
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A2R4QPY4_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPY4_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 1.380e-15 Identity = 43/94 (45.74%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 61 IKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*----------FNVLAEIVKLN*IFDMSCVAKRKECHCKLFVMT*KFRGITNSKI 312
IK M HFAE YAK+TNTFF +DPSITS+I+ GLA+YK++ N AEI I + +RKECHC+LFV + + KI
Sbjct: 13 IKAMQHFAETYAKQTNTFFSIDPSITSIIITGLANYKDRYKVPLCPCRNYHNEEAEIELNYWICPCVSMRERKECHCRLFVQPTESYASQSQKI 106
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A8E6D4Y1_9PHAE (Ferredoxin-thioredoxin reductase beta subunit n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4Y1_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 9.100e-15 Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1
Query: 61 IKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*F-------NVLAEIVKLN*IFDMS-CVA--KRKECHCKLFVMT*KFRGITNSKI 312
+K MH FAE YAKKTNTFFCVDPS+T V++ GL+ YK K N E +L+ + + CVA +R+ECHCKLF+ + N +I
Sbjct: 19 LKAMHKFAETYAKKTNTFFCVDPSVTCVVIKGLSVYKEKYGLPLCPCRNYENEEAELDSTYWLCPCVAMRERRECHCKLFLTSDDREASHNQEI 112
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Match: A0A141BSI2_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSI2_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 3.130e-14 Identity = 43/94 (45.74%), Postives = 53/94 (56.38%), Query Frame = 1
Query: 61 IKEMHHFAELYAKKTNTFFCVDPSITSVIVAGLADYKNK*----------FNVLAEIVKLN*IFDMSCVAKRKECHCKLFVMT*KFRGITNSKI 312
IK M FAE YAK+TNTFF +DPSITS+I+ GLA YK++ N AEI I + +RKECHCKLFV + + KI
Sbjct: 13 IKAMQQFAETYAKQTNTFFSLDPSITSIIITGLATYKDRHKVPLCPCRNYHNEEAEIELNYWICPCISMRERKECHCKLFVQPTESYASKSQKI 106 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig869.16703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig869.16703.1 >prot_E-siliculosus-1a_M_contig869.16703.1 ID=prot_E-siliculosus-1a_M_contig869.16703.1|Name=mRNA_E-siliculosus-1a_M_contig869.16703.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=60bp MTLKKTKKVTLNNKLDKGTRIKEMHHFAELYAKKTNTFFCVDPSITSVIVback to top mRNA from alignment at E-siliculosus-1a_M_contig869:5376..5727- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig869.16703.1 ID=mRNA_E-siliculosus-1a_M_contig869.16703.1|Name=mRNA_E-siliculosus-1a_M_contig869.16703.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=352bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig869:5376..5727- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig869:5376..5727- >mRNA_E-siliculosus-1a_M_contig869.16703.1 ID=mRNA_E-siliculosus-1a_M_contig869.16703.1|Name=mRNA_E-siliculosus-1a_M_contig869.16703.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=360bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig869:5376..5727- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |