mRNA_E-siliculosus-1a_M_contig865.16702.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig865.16702.1
Unique NamemRNA_E-siliculosus-1a_M_contig865.16702.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig865.16702.1 vs. uniprot
Match: D7G0J2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J2_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.260e-11
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 VFGFDAEWAVWASGVR-PVAVIQLSTMEGYTVVFHIKPNENRVGIIPKPLQELLENDDVLL 180
            V GFD EW+V  SG R  VA++QLS  +GYTV+FH+K  E R GI+P  L+ELL ND + L
Sbjct:  120 VLGFDIEWSVRPSGPRRQVALVQLSARDGYTVLFHLKYEERRRGILPTALKELLVNDTIQL 180
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig865.16702.1 vs. uniprot
Match: UPI001568D0F9 (exonuclease 3'-5' domain-containing protein 2 n=2 Tax=Maniola TaxID=111919 RepID=UPI001568D0F9)

HSP 1 Score: 51.2 bits (121), Expect = 6.400e-6
Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    7 GFDAEWAVWASGVRPVAVIQLSTMEGYTVVFHIKPNENRVGIIPKPLQELLENDDVLLV 183
            GFD EW       +PVA++QLST +GY  +F +    N++  IPK LQ+LL+++ +  V
Sbjct:   70 GFDCEWVTEQGRRQPVALLQLSTFDGYCALFRL----NQIKTIPKALQDLLQDETIYKV 124
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig865.16702.1 vs. uniprot
Match: A0A6J1PA92_BICAN (exonuclease 3'-5' domain-containing protein 2 n=1 Tax=Bicyclus anynana TaxID=110368 RepID=A0A6J1PA92_BICAN)

HSP 1 Score: 48.5 bits (114), Expect = 5.740e-5
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    7 GFDAEWAVWASGVRPVAVIQLSTMEGYTVVFHIKPNENRVGIIPKPLQELLENDDVLLV 183
            GFD EW       +P+A++QLST +GY  +  +    N +  IPK LQELLE++ +  V
Sbjct:   70 GFDCEWVTEQGRRQPIALLQLSTHDGYCALIRL----NLIKSIPKTLQELLEDNSIYKV 124
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig865.16702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0J2_ECTSI1.260e-1155.743'-5' exonuclease domain-containing protein n=1 Ta... [more]
UPI001568D0F96.400e-640.68exonuclease 3'-5' domain-containing protein 2 n=2 ... [more]
A0A6J1PA92_BICAN5.740e-540.68exonuclease 3'-5' domain-containing protein 2 n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig865contigE-siliculosus-1a_M_contig865:446..628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size183
Model size183
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko03032,ko03400
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EC3.1.11.1,3.6.4.12
EggNOG OGsKOG4373@1,KOG4373@2759
EggNOG free text desc.3'-5' exonuclease activity
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
KEGG koko:K10900,ko:K20777
Preferred nameWRN
Seed eggNOG ortholog2880.D7G0J2
Seed ortholog evalue2.6e-09
Seed ortholog score67.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936321.4693975-CDS-E-siliculosus-1a_M_contig865:445..6281622936321.4693975-CDS-E-siliculosus-1a_M_contig865:445..628Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig865 446..628 +
1696251024.5604775-CDS-E-siliculosus-1a_M_contig865:445..6281696251024.5604775-CDS-E-siliculosus-1a_M_contig865:445..628Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig865 446..628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig865.16702.1prot_E-siliculosus-1a_M_contig865.16702.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig865 446..628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig865.16702.1

>prot_E-siliculosus-1a_M_contig865.16702.1 ID=prot_E-siliculosus-1a_M_contig865.16702.1|Name=mRNA_E-siliculosus-1a_M_contig865.16702.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=61bp
VFGFDAEWAVWASGVRPVAVIQLSTMEGYTVVFHIKPNENRVGIIPKPLQ
ELLENDDVLLV
back to top

mRNA from alignment at E-siliculosus-1a_M_contig865:446..628+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig865.16702.1 ID=mRNA_E-siliculosus-1a_M_contig865.16702.1|Name=mRNA_E-siliculosus-1a_M_contig865.16702.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=183bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig865:446..628+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTGTTTGGGTTCGACGCAGAGTGGGCCGTCTGGGCCAGCGGTGTTAGACC
AGTAGCCGTGATACAGCTTTCGACCATGGAAGGCTACACCGTCGTCTTCC
ACATCAAGCCGAACGAGAACAGAGTCGGTATCATCCCCAAGCCACTTCAA
GAGCTGTTGGAGAACGACGATGTCCTCCTGGTG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig865:446..628+

>mRNA_E-siliculosus-1a_M_contig865.16702.1 ID=mRNA_E-siliculosus-1a_M_contig865.16702.1|Name=mRNA_E-siliculosus-1a_M_contig865.16702.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=366bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig865:446..628+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTGTTTGGGTTCGACGCAGAGTGGGCCGTCTGGGCCAGCGGTGTTAGACC
AGTAGCCGTGATACAGCTTTCGACCATGGAAGGCTACACCGTCGTCTTCC
ACATCAAGCCGAACGAGAACAGAGTCGGTATCATCCCCAAGCCACTTCAA
GAGCTGTTGGAGAACGACGATGTCCTCCTGGTGGTGTTTGGGTTCGACGC
AGAGTGGGCCGTCTGGGCCAGCGGTGTTAGACCAGTAGCCGTGATACAGC
TTTCGACCATGGAAGGCTACACCGTCGTCTTCCACATCAAGCCGAACGAG
AACAGAGTCGGTATCATCCCCAAGCCACTTCAAGAGCTGTTGGAGAACGA
CGATGTCCTCCTGGTG
back to top