prot_E-siliculosus-1a_M_contig865.16702.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig865.16702.1
Unique Nameprot_E-siliculosus-1a_M_contig865.16702.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length61
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig865.16702.1 vs. uniprot
Match: D7G0J2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J2_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.260e-11
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 0 
Query:    1 VFGFDAEWAVWASGVR-PVAVIQLSTMEGYTVVFHIKPNENRVGIIPKPLQELLENDDVLL 60
            V GFD EW+V  SG R  VA++QLS  +GYTV+FH+K  E R GI+P  L+ELL ND + L
Sbjct:  120 VLGFDIEWSVRPSGPRRQVALVQLSARDGYTVLFHLKYEERRRGILPTALKELLVNDTIQL 180
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BLAST of mRNA_E-siliculosus-1a_M_contig865.16702.1 vs. uniprot
Match: UPI001568D0F9 (exonuclease 3'-5' domain-containing protein 2 n=2 Tax=Maniola TaxID=111919 RepID=UPI001568D0F9)

HSP 1 Score: 51.2 bits (121), Expect = 6.400e-6
Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 0 
Query:    3 GFDAEWAVWASGVRPVAVIQLSTMEGYTVVFHIKPNENRVGIIPKPLQELLENDDVLLV 61
            GFD EW       +PVA++QLST +GY  +F +    N++  IPK LQ+LL+++ +  V
Sbjct:   70 GFDCEWVTEQGRRQPVALLQLSTFDGYCALFRL----NQIKTIPKALQDLLQDETIYKV 124
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BLAST of mRNA_E-siliculosus-1a_M_contig865.16702.1 vs. uniprot
Match: A0A6J1PA92_BICAN (exonuclease 3'-5' domain-containing protein 2 n=1 Tax=Bicyclus anynana TaxID=110368 RepID=A0A6J1PA92_BICAN)

HSP 1 Score: 48.5 bits (114), Expect = 5.740e-5
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 0 
Query:    3 GFDAEWAVWASGVRPVAVIQLSTMEGYTVVFHIKPNENRVGIIPKPLQELLENDDVLLV 61
            GFD EW       +P+A++QLST +GY  +  +    N +  IPK LQELLE++ +  V
Sbjct:   70 GFDCEWVTEQGRRQPIALLQLSTHDGYCALIRL----NLIKSIPKTLQELLEDNSIYKV 124
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig865.16702.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0J2_ECTSI1.260e-1155.743'-5' exonuclease domain-containing protein n=1 Ta... [more]
UPI001568D0F96.400e-640.68exonuclease 3'-5' domain-containing protein 2 n=2 ... [more]
A0A6J1PA92_BICAN5.740e-540.68exonuclease 3'-5' domain-containing protein 2 n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..61
e-value: 4.5E-9
score: 37.7
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig865contigE-siliculosus-1a_M_contig865:446..628 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig865.16702.1mRNA_E-siliculosus-1a_M_contig865.16702.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig865 446..628 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig865.16702.1 ID=prot_E-siliculosus-1a_M_contig865.16702.1|Name=mRNA_E-siliculosus-1a_M_contig865.16702.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=61bp
VFGFDAEWAVWASGVRPVAVIQLSTMEGYTVVFHIKPNENRVGIIPKPLQ
ELLENDDVLLV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR036397RNaseH_sf