mRNA_E-siliculosus-1a_M_contig86.16683.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig86.16683.1 vs. uniprot
Match: A0A6H5KQ50_9PHAE (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ50_9PHAE) HSP 1 Score: 259 bits (661), Expect = 3.030e-77 Identity = 123/131 (93.89%), Postives = 127/131 (96.95%), Query Frame = 3
Query: 747 QLGNQLEHHGIRESDLRAWCKSSGMLEDLSVDRIGFSKGEGEDGAFGTGHEFTLLAATCVRKAEGAEQREARRNSIAGDLRDACLACKRREAEYECVPCGCHAFCRGCAMKVATGGRCKRCKNMFMDLKRL 1139
+LGNQLEHHGIRESDLRAWC+SSGMLEDLSVDRIGFSKGEGEDGAFGTG EFTLLAATCVRKAEGAEQREARR+SIAGDL D CLAC RREAEYECVPCGCHAFCRGCAMKVATGGRCKRCKNMF+DLKRL
Sbjct: 174 ELGNQLEHHGIRESDLRAWCESSGMLEDLSVDRIGFSKGEGEDGAFGTGREFTLLAATCVRKAEGAEQREARRSSIAGDLSDGCLACNRREAEYECVPCGCHAFCRGCAMKVATGGRCKRCKNMFVDLKRL 304
BLAST of mRNA_E-siliculosus-1a_M_contig86.16683.1 vs. uniprot
Match: D8LBV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV3_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 2.620e-15 Identity = 55/77 (71.43%), Postives = 56/77 (72.73%), Query Frame = 3
Query: 1488 MDRAPIVFFMFLQSESLGRVEGWSL---GAF-PLSYLKPPSPLYTVFSFRRREEGSFISVGRVLSVSVKKTQRSRLT 1706
MD AP VF MFL L RV W+L G F P YLKPPSPL TVFSFRRREEGSFISV RVLSVS K TQRSRLT
Sbjct: 1 MDGAPTVF-MFL----LFRVSPWALWRGGDFEPFPYLKPPSPLCTVFSFRRREEGSFISVRRVLSVSAK-TQRSRLT 71
BLAST of mRNA_E-siliculosus-1a_M_contig86.16683.1 vs. uniprot
Match: A0A7S2B7F5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B7F5_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.410e-12 Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 3
Query: 984 LRDACLACKRREAEYECVPCGCHAFCRGCAMKVATGGRCKRCKNMFMDLKR 1136
+++ CLACK + EYECVPCGC +FCR CAMKVA+GG+CK C+ + +++
Sbjct: 8 IQEKCLACKVADIEYECVPCGCKSFCRRCAMKVASGGKCKNCREFYTSVRK 58
BLAST of mRNA_E-siliculosus-1a_M_contig86.16683.1 vs. uniprot
Match: A0A061QSP6_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QSP6_9CHLO) HSP 1 Score: 67.0 bits (162), Expect = 3.870e-10 Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 3
Query: 996 CLACKRREAEYECVPCGCHAFCRGCAMKVATGGRCKRCKNMFMDLKR 1136
C+ CK + ++ VPCGC AFC+ CAMK+ATGG+C+ CK MF +L++
Sbjct: 39 CIICKSEKPLFQAVPCGCKAFCKKCAMKLATGGKCRVCKQMFSELRK 85
BLAST of mRNA_E-siliculosus-1a_M_contig86.16683.1 vs. uniprot
Match: A0A448YVJ3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVJ3_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 8.500e-10 Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 3
Query: 996 CLACKRREAEYECVPCGCHAFCRGCAMKVATGGRCKRCKNMFMDLKRL 1139
CL C +++ YEC PCGC +FC CAMK+A+GGRCK C + L+RL
Sbjct: 43 CLKCHKKQIVYECDPCGCPSFCTSCAMKLASGGRCKTCHQAYGGLRRL 90
BLAST of mRNA_E-siliculosus-1a_M_contig86.16683.1 vs. uniprot
Match: A0A482S400_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S400_9ARCH) HSP 1 Score: 64.7 bits (156), Expect = 7.940e-9 Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 3
Query: 996 CLACKRREAEYECVPCGCHAFCRGCAMKVATGGRCKRCKNMFMDLKRLG 1142
C C + E+EC PC C+ +C+ CAMK+ATGG+CK CK MF + +G
Sbjct: 64 CSICAKPNPEFECWPCRCNVYCKKCAMKLATGGKCKTCKTMFTTMSHIG 112
BLAST of mRNA_E-siliculosus-1a_M_contig86.16683.1 vs. uniprot
Match: A0A2P6NZB1_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NZB1_9EUKA) HSP 1 Score: 58.9 bits (141), Expect = 1.170e-7 Identity = 26/49 (53.06%), Postives = 31/49 (63.27%), Query Frame = 3
Query: 990 DACLACKRREAEYECVPCGCHAFCRGCAMKVATGGRCKRCKNMFMDLKR 1136
D CLACK A Y V C +C CAMK+ATGG+CK+C MF LK+
Sbjct: 4 DQCLACKNNTATYSPVGCDHIVYCSSCAMKLATGGKCKQCGQMFAQLKK 52
BLAST of mRNA_E-siliculosus-1a_M_contig86.16683.1 vs. uniprot
Match: F2USB3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2USB3_SALR5) HSP 1 Score: 60.8 bits (146), Expect = 1.190e-7 Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 3
Query: 996 CLACKRREAEYECVPCGCHAFCRGCAMKVATGGRCKRCKNMFMDLKRL 1139
C CK+ EY +PCGC C+ CAMK+A+GG+CK C F+ L RL
Sbjct: 48 CKLCKKVPVEYRAMPCGCFLACQKCAMKIASGGKCKLCHRFFIQLSRL 95
BLAST of mRNA_E-siliculosus-1a_M_contig86.16683.1 vs. uniprot
Match: A0A7J6MVW3_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6MVW3_PEROL) HSP 1 Score: 56.2 bits (134), Expect = 1.670e-6 Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 3
Query: 996 CLACKRREAEYECVPCGCHAF-CRGCAMKVATGGRCKRCKNMFMDLKR 1136
C C +REAE+ CG H F C+GCAMK+ATGG+CK C +F D+ R
Sbjct: 25 CRCCHKREAEFGPSTCG-HIFACKGCAMKIATGGKCKICGELFADIVR 71
BLAST of mRNA_E-siliculosus-1a_M_contig86.16683.1 vs. uniprot
Match: A0A7R9V7G6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V7G6_9CHLO) HSP 1 Score: 58.2 bits (139), Expect = 1.890e-6 Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 3
Query: 996 CLACKRREAEYECVPCGCHAFCRGCAMKVATGGRCKRCKNMFMDLKRL 1139
CL CK+ EY PCG A C+ CAMKV TGG+CK C +++++KR+
Sbjct: 87 CLLCKKGPLEYAGWPCGHAAMCKHCAMKVCTGGKCKVCHELYVEVKRV 134 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig86.16683.1 >prot_E-siliculosus-1a_M_contig86.16683.1 ID=prot_E-siliculosus-1a_M_contig86.16683.1|Name=mRNA_E-siliculosus-1a_M_contig86.16683.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=88bp MDRAPIVFFMFLQSESLGRVEGWSLGAFPLSYLKPPSPLYTVFSFRRREEback to top mRNA from alignment at E-siliculosus-1a_M_contig86:554039..557513- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig86.16683.1 ID=mRNA_E-siliculosus-1a_M_contig86.16683.1|Name=mRNA_E-siliculosus-1a_M_contig86.16683.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3475bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:554039..557513- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:554039..557513- >mRNA_E-siliculosus-1a_M_contig86.16683.1 ID=mRNA_E-siliculosus-1a_M_contig86.16683.1|Name=mRNA_E-siliculosus-1a_M_contig86.16683.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=528bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:554039..557513- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |