mRNA_E-siliculosus-1a_M_contig86.16648.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16648.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16648.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16648.1 vs. uniprot
Match: D8LBS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS6_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 1.440e-84
Identity = 120/140 (85.71%), Postives = 129/140 (92.14%), Query Frame = 3 
Query:  123 WKLTIEALGTKIDITAPADAKNQDRFVAGCGGDIGVNRIKRLGHHLQRLDDHIDANARGGCESLRWVDNLEQKRTVLRQTDGILEEGDFIFSPALGGIWMKFRHCPSTMNGSSEWNMGFATPTIELNVLMRRERLANTGG 542
            WKLTIEAL TKIDITAPADAKNQ  FVAGCGGD+GVNRIKRLGHHLQRL+DHID NARG  +SLRWVDNLEQKRTVLRQTDGIL EGDF+F+PALGGIWM+FRHCPSTMNGS EWN GFATP+I+L+VLM RERLANT G
Sbjct:   42 WKLTIEALETKIDITAPADAKNQAGFVAGCGGDVGVNRIKRLGHHLQRLNDHIDPNARGSYDSLRWVDNLEQKRTVLRQTDGILGEGDFVFNPALGGIWMRFRHCPSTMNGSGEWNTGFATPSIKLHVLMFRERLANTDG 181
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16648.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 7.290e-49
Identity = 86/138 (62.32%), Postives = 101/138 (73.19%), Query Frame = 3 
Query:  129 LTIEALGTKIDITAPADAKNQDRFVAGCGGDIGVNRIKRLGHHLQRLDDHIDANARGGCESLRWVDNLEQKRTVLRQTDGILEEGDFIFSPALGGIWMKFRHCPSTMNGSSEWNMGFATPTIELNVLMRRERLANTGG 542
            +TIEALG K+ I AP +AKN D F A CGG +GVN ++RL  H+Q LD HID +ARGG E LRWVDNL+QKRTVLRQ   ILE+ +F + PALGG+WM+ RH PS    S  WN G ATPTIE  VLMRR RLA+ GG
Sbjct: 2855 MTIEALGVKVRIAAPPEAKNMDGFSAACGGAVGVNSMRRLRGHVQNLDGHIDEHARGGDEGLRWVDNLKQKRTVLRQVGAILED-EFRYLPALGGLWMRVRHLPSAKTASDVWNTGSATPTIEYRVLMRRARLADEGG 2991
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16648.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 3.350e-48
Identity = 86/138 (62.32%), Postives = 101/138 (73.19%), Query Frame = 3 
Query:  129 LTIEALGTKIDITAPADAKNQDRFVAGCGGDIGVNRIKRLGHHLQRLDDHIDANARGGCESLRWVDNLEQKRTVLRQTDGILEEGDFIFSPALGGIWMKFRHCPSTMNGSSEWNMGFATPTIELNVLMRRERLANTGG 542
            +T+EALG KI I AP +AKN D F A CGG +GVN ++RL   LQ+LD HID +ARGG E LRWVDNL QKRTVLRQ   ILE+ +F + PALGG+WM+ RH PS  +GS  WN G ATPTIE  VLMRR  LA+ GG
Sbjct: 2129 MTMEALGVKIRIAAPPEAKNNDGFSAACGGAVGVNSMRRLRGQLQKLDGHIDEHARGGDEGLRWVDNLNQKRTVLRQVGAILED-EFRYLPALGGLWMRVRHLPSAKSGSGVWNTGSATPTIEFRVLMRRALLADEGG 2265
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16648.1 vs. uniprot
Match: A0A6H5JFX2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX2_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 7.610e-43
Identity = 80/140 (57.14%), Postives = 93/140 (66.43%), Query Frame = 3 
Query:  123 WKLTIEALGTKIDITAPADAKNQDRFVAGCGGDIGVNRIKRLGHHLQRLDDHIDANARGGCESLRWVDNLEQKRTVLRQTDGILEEGDFIFSPALGGIWMKFRHCPSTMNGSSEWNMGFATPTIELNVLMRRERLANTGG 542
            WKLTIEAL T++                        ++++R+    +R    +   A G  +SLRWVDNLEQKR VLRQ D ILE GDFIF+PALGGIWMKFRHCPSTM GS EWN GFATPTI+L+VLM RERLANTGG
Sbjct:   53 WKLTIEALKTRL-----------------------TSQLQRM----RRTKMDLSLVAGGMLDSLRWVDNLEQKRDVLRQMDDILEGGDFIFNPALGGIWMKFRHCPSTMIGSGEWNTGFATPTIKLHVLMCRERLANTGG 165
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LBS6_ECTSI1.440e-8485.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNI2_9PHAE7.290e-4962.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWI3_ECTSI3.350e-4862.32Global transcription factor group n=1 Tax=Ectocarp... [more]
A0A6H5JFX2_9PHAE7.610e-4357.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:283546..284256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size231
Model size711
Exons1
Ec32 orthologEc-27_002860.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936310.7652884-UTR-E-siliculosus-1a_M_contig86:283545..2840251622936310.7652884-UTR-E-siliculosus-1a_M_contig86:283545..284025Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 283546..284025 -
1696251019.572114-UTR-E-siliculosus-1a_M_contig86:283545..2840251696251019.572114-UTR-E-siliculosus-1a_M_contig86:283545..284025Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 283546..284025 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936310.783542-CDS-E-siliculosus-1a_M_contig86:284025..2842561622936310.783542-CDS-E-siliculosus-1a_M_contig86:284025..284256Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 284026..284256 -
1696251019.582062-CDS-E-siliculosus-1a_M_contig86:284025..2842561696251019.582062-CDS-E-siliculosus-1a_M_contig86:284025..284256Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 284026..284256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16648.1prot_E-siliculosus-1a_M_contig86.16648.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 284026..284256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16648.1

>prot_E-siliculosus-1a_M_contig86.16648.1 ID=prot_E-siliculosus-1a_M_contig86.16648.1|Name=mRNA_E-siliculosus-1a_M_contig86.16648.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=77bp
MRSDPRLVKMWWDGGLVMVPAIVEDAAGVTGLPGVPFTHGPGSSPSRRWG
QRLTSQLQRTRRTKIDLSLVAGGILG*
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mRNA from alignment at E-siliculosus-1a_M_contig86:283546..284256-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16648.1 ID=mRNA_E-siliculosus-1a_M_contig86.16648.1|Name=mRNA_E-siliculosus-1a_M_contig86.16648.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=711bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:283546..284256- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGTAGCGACCCGCGCCTGGTCAAGATGTGGTGGGACGGTGGCCTCGT
GATGGTACCAGCTATCGTCGAGGATGCGGCGGGAGTCACAGGGCTGCCGG
GGGTCCCCTTCACCCATGGTCCTGGAAGCTCACCATCGAGGCGTTGGGGA
CAAAGATTGACATCACAGCTCCAGCGGACGCGAAGAACCAAGATAGATTT
GTCGCTGGTTGCGGGGGGGATATTGGGGTGAACCGCATCAAGAGGCTCGG
GCACCACCTGCAGAGACTGGACGACCATATCGATGCGAATGCCAGGGGTG
GCTGTGAGAGTCTTCGGTGGGTCGACAACCTCGAACAGAAGCGCACCGTC
CTGCGCCAGACGGATGGCATCCTCGAGGAGGGCGACTTCATCTTCAGTCC
TGCCTTGGGGGGTATCTGGATGAAATTCCGCCACTGCCCGTCCACGATGA
ACGGCTCCAGCGAGTGGAACATGGGATTCGCTACGCCCACCATCGAGTTG
AACGTGCTGATGCGTCGTGAGCGTCTCGCCAACACGGGCGGCTGCGGCTG
CGGCTGCTGCGGCGGCGGCTGAAGAGAGCGAGGAGGAGGAGGAGGAGGAG
GAGATGAGGAGGGGGTTCAAACGACCCCCGTTTACCAATGACTGGCACAC
AGTACAAGCGCGGCCTCAACGAGATTGTCTACATGGCGCGCGAGACGGAG
GATCTGGTCTA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:283546..284256-

>mRNA_E-siliculosus-1a_M_contig86.16648.1 ID=mRNA_E-siliculosus-1a_M_contig86.16648.1|Name=mRNA_E-siliculosus-1a_M_contig86.16648.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=462bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:283546..284256- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGTAGCGACCCGCGCCTGGTCAAGATGTGGTGGGACGGTGGCCTCGT
GATGGTACCAGCTATCGTCGAGGATGCGGCGGGAGTCACAGGGCTGCCGG
GGGTCCCCTTCACCCATGGTCCTGGAAGCTCACCATCGAGGCGTTGGGGA
CAAAGATTGACATCACAGCTCCAGCGGACGCGAAGAACCAAGATAGATTT
GTCGCTGGTTGCGGGGGGGATATTGGGGTGAATGCGTAGCGACCCGCGCC
TGGTCAAGATGTGGTGGGACGGTGGCCTCGTGATGGTACCAGCTATCGTC
GAGGATGCGGCGGGAGTCACAGGGCTGCCGGGGGTCCCCTTCACCCATGG
TCCTGGAAGCTCACCATCGAGGCGTTGGGGACAAAGATTGACATCACAGC
TCCAGCGGACGCGAAGAACCAAGATAGATTTGTCGCTGGTTGCGGGGGGG
ATATTGGGGTGA
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