mRNA_E-siliculosus-1a_M_contig86.16692.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16692.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16692.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:621930..622677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size444
Model size748
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16692.1prot_E-siliculosus-1a_M_contig86.16692.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 622006..622449 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936306.4761949-UTR-E-siliculosus-1a_M_contig86:621929..6220051622936306.4761949-UTR-E-siliculosus-1a_M_contig86:621929..622005Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 621930..622005 +
1696251017.6284323-UTR-E-siliculosus-1a_M_contig86:621929..6220051696251017.6284323-UTR-E-siliculosus-1a_M_contig86:621929..622005Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 621930..622005 +
1622936306.5067112-UTR-E-siliculosus-1a_M_contig86:622449..6226771622936306.5067112-UTR-E-siliculosus-1a_M_contig86:622449..622677Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 622450..622677 +
1696251017.654146-UTR-E-siliculosus-1a_M_contig86:622449..6226771696251017.654146-UTR-E-siliculosus-1a_M_contig86:622449..622677Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 622450..622677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936306.4881618-CDS-E-siliculosus-1a_M_contig86:622005..6224491622936306.4881618-CDS-E-siliculosus-1a_M_contig86:622005..622449Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 622006..622449 +
1696251017.6405594-CDS-E-siliculosus-1a_M_contig86:622005..6224491696251017.6405594-CDS-E-siliculosus-1a_M_contig86:622005..622449Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 622006..622449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16692.1

>prot_E-siliculosus-1a_M_contig86.16692.1 ID=prot_E-siliculosus-1a_M_contig86.16692.1|Name=mRNA_E-siliculosus-1a_M_contig86.16692.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=148bp
MRNKQKSPPLLFSRWKRQRKSVALLGIFFVCPVCTYQDVSSSWCRSPCLS
NRPFVCSSCHLKGVEGIGRKGPWCSAPAAHVTNASLPLERDDLSVISTHP
LPRCLAGIPTTPSPPNEYDRAGDRIYNNQACGHSSKKATTAICTNPQ*
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mRNA from alignment at E-siliculosus-1a_M_contig86:621930..622677+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16692.1 ID=mRNA_E-siliculosus-1a_M_contig86.16692.1|Name=mRNA_E-siliculosus-1a_M_contig86.16692.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=748bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:621930..622677+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCAGGTACGAGTGCAAGAGAAGCGGAAGGGCGAAACGGTCGAGTGTTCAG
GGGGGGCCTTGGTTTTTGGTCCGTGTATGCGGAACAAGCAAAAGTCGCCA
CCGCTGCTGTTTAGCCGATGGAAAAGACAGAGAAAAAGTGTGGCCTTGCT
CGGTATATTTTTTGTGTGTCCGGTGTGTACGTACCAGGACGTGAGTTCGA
GTTGGTGTAGATCACCTTGCTTGTCGAATCGCCCGTTCGTGTGTTCCTCC
TGCCACCTCAAAGGGGTGGAAGGTATAGGAAGAAAAGGGCCTTGGTGCTC
GGCACCCGCAGCTCATGTCACGAACGCTTCTCTCCCTCTCGAGCGTGATG
ATCTGTCCGTGATCAGCACACACCCCTTACCCCGATGCCTCGCCGGCATA
CCAACAACACCATCGCCACCCAACGAGTACGATCGGGCCGGCGACCGGAT
CTACAACAACCAAGCTTGTGGGCACTCGTCTAAAAAGGCAACGACGGCGA
TATGTACGAACCCACAATGAACAACAAGCAACGTTCCCACATGAAAACGA
CAACGACGACGACATAGACATACCAACAGTGAGACAACCAAAGGCACCAA
TCATCGTTCAACGGCCACGACGACCATGTGCATCACCCGACGAGCAACAA
ACAACGACATGCATACCAAACTAACGAAATCGGCAACAGGAGCGAGCATT
GGCCCGCGCGCGCAGCAAGGAGTGGCACTCCAAGGTGACCGTTGCGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:621930..622677+

>mRNA_E-siliculosus-1a_M_contig86.16692.1 ID=mRNA_E-siliculosus-1a_M_contig86.16692.1|Name=mRNA_E-siliculosus-1a_M_contig86.16692.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=888bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:621930..622677+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGGAACAAGCAAAAGTCGCCACCGCTGCTGTTTAGCCGATGGAAAAG
ACAGAGAAAAAGTGTGGCCTTGCTCGGTATATTTTTTGTGTGTCCGGTGT
GTACGTACCAGGACGTGAGTTCGAGTTGGTGTAGATCACCTTGCTTGTCG
AATCGCCCGTTCGTGTGTTCCTCCTGCCACCTCAAAGGGGTGGAAGGTAT
AGGAAGAAAAGGGCCTTGGTGCTCGGCACCCGCAGCTCATGTCACGAACG
CTTCTCTCCCTCTCGAGCGTGATGATCTGTCCGTGATCAGCACACACCCC
TTACCCCGATGCCTCGCCGGCATACCAACAACACCATCGCCACCCAACGA
GTACGATCGGGCCGGCGACCGGATCTACAACAACCAAGCTTGTGGGCACT
CGTCTAAAAAGGCAACGACGGCGATATGTACGAACCCACAATGAATGCGG
AACAAGCAAAAGTCGCCACCGCTGCTGTTTAGCCGATGGAAAAGACAGAG
AAAAAGTGTGGCCTTGCTCGGTATATTTTTTGTGTGTCCGGTGTGTACGT
ACCAGGACGTGAGTTCGAGTTGGTGTAGATCACCTTGCTTGTCGAATCGC
CCGTTCGTGTGTTCCTCCTGCCACCTCAAAGGGGTGGAAGGTATAGGAAG
AAAAGGGCCTTGGTGCTCGGCACCCGCAGCTCATGTCACGAACGCTTCTC
TCCCTCTCGAGCGTGATGATCTGTCCGTGATCAGCACACACCCCTTACCC
CGATGCCTCGCCGGCATACCAACAACACCATCGCCACCCAACGAGTACGA
TCGGGCCGGCGACCGGATCTACAACAACCAAGCTTGTGGGCACTCGTCTA
AAAAGGCAACGACGGCGATATGTACGAACCCACAATGA
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