mRNA_E-siliculosus-1a_M_contig86.16682.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16682.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16682.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16682.1 vs. uniprot
Match: A0A6H5KWL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL3_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.160e-59
Identity = 121/124 (97.58%), Postives = 121/124 (97.58%), Query Frame = 3 
Query:  156 RDPGMLRMASSVSTEAPSSKSISVVAPSPDGSGAYLFSRGESRAFGSRRQQSSSLSSYPSFGLSSSGVESSVEAGETGDGGGAGAGMFFGGQHSGRSSAFSDNASSGNVSSLSPPEDQLDEDSV 527
            RDPGMLRMASSVSTEAPSSKSISVVAPSPDGSGAYLFSRGESRAFGSRRQQSSSLSSYPSFGLSSSGVESSVEAGETGDGGGAG  MFFGGQHSGRSSAFSDNASSGNVSSLSPPED LDEDSV
Sbjct: 1755 RDPGMLRMASSVSTEAPSSKSISVVAPSPDGSGAYLFSRGESRAFGSRRQQSSSLSSYPSFGLSSSGVESSVEAGETGDGGGAG--MFFGGQHSGRSSAFSDNASSGNVSSLSPPEDHLDEDSV 1876
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWL3_9PHAE1.160e-5997.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:550124..550653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size528
Model size530
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936306.3812284-CDS-E-siliculosus-1a_M_contig86:550123..5506511622936306.3812284-CDS-E-siliculosus-1a_M_contig86:550123..550651Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 550124..550651 +
1696251017.6102772-CDS-E-siliculosus-1a_M_contig86:550123..5506511696251017.6102772-CDS-E-siliculosus-1a_M_contig86:550123..550651Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 550124..550651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16682.1prot_E-siliculosus-1a_M_contig86.16682.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 550124..550651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16682.1

>prot_E-siliculosus-1a_M_contig86.16682.1 ID=prot_E-siliculosus-1a_M_contig86.16682.1|Name=mRNA_E-siliculosus-1a_M_contig86.16682.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=176bp
GGGSPGPPWPVRRRRPGRRRRLPPRRPWRPRASRTRRPRASRGRRRRARC
ACATRACSAWPRPCPPRRPAPSPSPSWRRPRTGAGRTCSAAERAGRSALA
GSSLPASAATRASASAAAASRAASRRERQGTAAAPAPACSSAGSTRAGAA
RSATTRAAATCPPSARRKTSWTKIRW
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mRNA from alignment at E-siliculosus-1a_M_contig86:550124..550653+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16682.1 ID=mRNA_E-siliculosus-1a_M_contig86.16682.1|Name=mRNA_E-siliculosus-1a_M_contig86.16682.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=530bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:550124..550653+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCGGCGGCAGCCCAGGTCCGCCATGGCCCGTTCGGCGGCGGCGGCCGGG
GCGGCGGCGGCGGCTGCCGCCGCGGCGTCCGTGGAGGCCAAGGGCCAGCA
GAACCCGGAGGCCAAGGGCCAGCAGAGGGCGGAGGCGAAGAGCTCGCTGC
GCGTGCGCGACCCGGGCATGCTCCGCATGGCCTCGTCCGTGTCCACCGAG
GCGCCCAGCTCCAAGTCCATCTCCGTCGTGGCGCCGTCCCCGGACGGGAG
CGGGGCGTACCTGTTCAGCCGCGGAGAGAGCAGGGCGTTCGGCTCTCGCC
GGCAGCAGTCTTCCAGCCTCAGCAGCTACCCGAGCTTCGGCCTCAGCAGC
AGCGGCGTCGAGAGCAGCGTCGAGGCGGGAGAGACAGGGGACGGCGGCGG
CGCCGGCGCCGGCATGTTCTTCGGCGGGCAGCACTCGGGCAGGAGCAGCG
CGTTCAGCGACAACGCGAGCAGCGGCAACGTGTCCTCCCTCAGCCCGCCG
GAAGACCAGCTGGACGAAGATTCGGTGGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:550124..550653+

>mRNA_E-siliculosus-1a_M_contig86.16682.1 ID=mRNA_E-siliculosus-1a_M_contig86.16682.1|Name=mRNA_E-siliculosus-1a_M_contig86.16682.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1056bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:550124..550653+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCGGCGGCAGCCCAGGTCCGCCATGGCCCGTTCGGCGGCGGCGGCCGGG
GCGGCGGCGGCGGCTGCCGCCGCGGCGTCCGTGGAGGCCAAGGGCCAGCA
GAACCCGGAGGCCAAGGGCCAGCAGAGGGCGGAGGCGAAGAGCTCGCTGC
GCGTGCGCGACCCGGGCATGCTCCGCATGGCCTCGTCCGTGTCCACCGAG
GCGCCCAGCTCCAAGTCCATCTCCGTCGTGGCGCCGTCCCCGGACGGGAG
CGGGGCGTACCTGTTCAGCCGCGGAGAGAGCAGGGCGTTCGGCTCTCGCC
GGCAGCAGTCTTCCAGCCTCAGCAGCTACCCGAGCTTCGGCCTCAGCAGC
AGCGGCGTCGAGAGCAGCGTCGAGGCGGGAGAGACAGGGGACGGCGGCGG
CGCCGGCGCCGGCATGTTCTTCGGCGGGCAGCACTCGGGCAGGAGCAGCG
CGTTCAGCGACAACGCGAGCAGCGGCAACGTGTCCTCCCTCAGCCCGCCG
GAAGACCAGCTGGACGAAGATTCGGTGGGGCGGCGGCAGCCCAGGTCCGC
CATGGCCCGTTCGGCGGCGGCGGCCGGGGCGGCGGCGGCGGCTGCCGCCG
CGGCGTCCGTGGAGGCCAAGGGCCAGCAGAACCCGGAGGCCAAGGGCCAG
CAGAGGGCGGAGGCGAAGAGCTCGCTGCGCGTGCGCGACCCGGGCATGCT
CCGCATGGCCTCGTCCGTGTCCACCGAGGCGCCCAGCTCCAAGTCCATCT
CCGTCGTGGCGCCGTCCCCGGACGGGAGCGGGGCGTACCTGTTCAGCCGC
GGAGAGAGCAGGGCGTTCGGCTCTCGCCGGCAGCAGTCTTCCAGCCTCAG
CAGCTACCCGAGCTTCGGCCTCAGCAGCAGCGGCGTCGAGAGCAGCGTCG
AGGCGGGAGAGACAGGGGACGGCGGCGGCGCCGGCGCCGGCATGTTCTTC
GGCGGGCAGCACTCGGGCAGGAGCAGCGCGTTCAGCGACAACGCGAGCAG
CGGCAACGTGTCCTCCCTCAGCCCGCCGGAAGACCAGCTGGACGAAGATT
CGGTGG
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