mRNA_E-siliculosus-1a_M_contig85.16610.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig85.16610.1
Unique NamemRNA_E-siliculosus-1a_M_contig85.16610.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig85.16610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig85contigE-siliculosus-1a_M_contig85:468386..469482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size603
Model size1097
Exons1
Hectar predicted targeting categorymitochondrion
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig85.16610.1prot_E-siliculosus-1a_M_contig85.16610.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig85 468629..469231 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936296.4707754-UTR-E-siliculosus-1a_M_contig85:468385..4686281622936296.4707754-UTR-E-siliculosus-1a_M_contig85:468385..468628Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig85 468386..468628 +
1696251013.349632-UTR-E-siliculosus-1a_M_contig85:468385..4686281696251013.349632-UTR-E-siliculosus-1a_M_contig85:468385..468628Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig85 468386..468628 +
1622936296.505302-UTR-E-siliculosus-1a_M_contig85:469231..4694821622936296.505302-UTR-E-siliculosus-1a_M_contig85:469231..469482Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig85 469232..469482 +
1696251013.3749726-UTR-E-siliculosus-1a_M_contig85:469231..4694821696251013.3749726-UTR-E-siliculosus-1a_M_contig85:469231..469482Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig85 469232..469482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936296.4850342-CDS-E-siliculosus-1a_M_contig85:468628..4692311622936296.4850342-CDS-E-siliculosus-1a_M_contig85:468628..469231Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 468629..469231 +
1696251013.3641262-CDS-E-siliculosus-1a_M_contig85:468628..4692311696251013.3641262-CDS-E-siliculosus-1a_M_contig85:468628..469231Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig85 468629..469231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig85.16610.1

>prot_E-siliculosus-1a_M_contig85.16610.1 ID=prot_E-siliculosus-1a_M_contig85.16610.1|Name=mRNA_E-siliculosus-1a_M_contig85.16610.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=201bp
MGACMSMRATSVRFRRGLGLLSSSFGRPQMIPLYWFQCRAVLSRARQTGI
HVLTFDAMPSSMNFLIAKLFCAGDGAIDHLLSAYPLRREACVLVGGSQLK
VVEVGVAVSAVRTDGCLSAPPSLACFSERVCLSCSILCVVVCPSCDGCVP
TSAVLNIFCCRSFFVCLSTCSVGGAFCSILLNAWVVARKAGKASRVIRMQ
*
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mRNA from alignment at E-siliculosus-1a_M_contig85:468386..469482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig85.16610.1 ID=mRNA_E-siliculosus-1a_M_contig85.16610.1|Name=mRNA_E-siliculosus-1a_M_contig85.16610.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1097bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig85:468386..469482+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCTTATTGTGCCGCGTTCTTCGCTGGCTTTCGGCATCTGTCATTTGGCG
TCCTTGCTATCACCACCTTGGTTTTTTTTTGCCACCAAGCGCCCAAAGGT
GTATAGACCGTGTGGAACAGCAGGAGAAGAAATTGTTTTGGGTTGTGCTT
GGCGGCGCGTTGGTGCGCTTGTGGCCTCGCTTCGCCCTTTGGCATTGTTG
TGCGTTGCACACGTTGTTACACAGCTCTCACTGTCAACTTGTGATGGGCG
CATGCATGTCGATGAGAGCCACCTCTGTCAGGTTTCGCCGAGGCTTGGGT
CTTCTTAGTTCCTCGTTTGGGCGGCCTCAAATGATCCCGCTCTATTGGTT
TCAGTGCAGAGCGGTTCTTTCCCGGGCTCGCCAAACGGGGATCCACGTTC
TCACGTTTGATGCCATGCCGTCGAGCATGAATTTCTTGATTGCCAAGTTG
TTTTGTGCGGGGGATGGGGCCATAGACCATCTCCTGTCTGCGTACCCCCT
CCGAAGGGAGGCGTGTGTCCTTGTAGGTGGAAGTCAACTCAAAGTTGTTG
AAGTAGGTGTTGCAGTGTCTGCTGTGCGGACGGATGGTTGCCTGTCGGCG
CCTCCCTCTCTGGCCTGTTTTTCTGAGAGGGTGTGTCTGTCGTGTAGCAT
TTTGTGTGTGGTGGTTTGTCCATCGTGTGATGGGTGTGTCCCCACATCTG
CAGTCCTAAATATATTTTGTTGCCGTTCCTTCTTTGTCTGTCTCTCGACT
TGTTCCGTCGGTGGTGCGTTCTGCTCCATCCTTTTGAATGCTTGGGTTGT
TGCGCGGAAGGCAGGGAAGGCGTCTCGCGTGATCCGTATGCAATAAATTA
CATGTAATTACTTTCCCTTCCAACGTGCCATGAATAATACTTGCGGACCT
GGAGAGAGAGAGAGGTCGATGTTCGCTTGTTCTTGAACTCCACGAAAGTA
CGCTACAAGTAGTCGTGGTTCTCCCCCAAAAGTGTCACCTCCCCACCCGG
GTTTCCTCTTTTCAGATATGCCGATGTGTTTGGCCTGAGGTTGTAGGCGA
CAAGAGTCGTGTGTGATGTGGTACGTAGTGGAAAGGAGACTCAATTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig85:468386..469482+

>mRNA_E-siliculosus-1a_M_contig85.16610.1 ID=mRNA_E-siliculosus-1a_M_contig85.16610.1|Name=mRNA_E-siliculosus-1a_M_contig85.16610.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1206bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig85:468386..469482+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGCGCATGCATGTCGATGAGAGCCACCTCTGTCAGGTTTCGCCGAGG
CTTGGGTCTTCTTAGTTCCTCGTTTGGGCGGCCTCAAATGATCCCGCTCT
ATTGGTTTCAGTGCAGAGCGGTTCTTTCCCGGGCTCGCCAAACGGGGATC
CACGTTCTCACGTTTGATGCCATGCCGTCGAGCATGAATTTCTTGATTGC
CAAGTTGTTTTGTGCGGGGGATGGGGCCATAGACCATCTCCTGTCTGCGT
ACCCCCTCCGAAGGGAGGCGTGTGTCCTTGTAGGTGGAAGTCAACTCAAA
GTTGTTGAAGTAGGTGTTGCAGTGTCTGCTGTGCGGACGGATGGTTGCCT
GTCGGCGCCTCCCTCTCTGGCCTGTTTTTCTGAGAGGGTGTGTCTGTCGT
GTAGCATTTTGTGTGTGGTGGTTTGTCCATCGTGTGATGGGTGTGTCCCC
ACATCTGCAGTCCTAAATATATTTTGTTGCCGTTCCTTCTTTGTCTGTCT
CTCGACTTGTTCCGTCGGTGGTGCGTTCTGCTCCATCCTTTTGAATGCTT
GGGTTGTTGCGCGGAAGGCAGGGAAGGCGTCTCGCGTGATCCGTATGCAA
TAAATGGGCGCATGCATGTCGATGAGAGCCACCTCTGTCAGGTTTCGCCG
AGGCTTGGGTCTTCTTAGTTCCTCGTTTGGGCGGCCTCAAATGATCCCGC
TCTATTGGTTTCAGTGCAGAGCGGTTCTTTCCCGGGCTCGCCAAACGGGG
ATCCACGTTCTCACGTTTGATGCCATGCCGTCGAGCATGAATTTCTTGAT
TGCCAAGTTGTTTTGTGCGGGGGATGGGGCCATAGACCATCTCCTGTCTG
CGTACCCCCTCCGAAGGGAGGCGTGTGTCCTTGTAGGTGGAAGTCAACTC
AAAGTTGTTGAAGTAGGTGTTGCAGTGTCTGCTGTGCGGACGGATGGTTG
CCTGTCGGCGCCTCCCTCTCTGGCCTGTTTTTCTGAGAGGGTGTGTCTGT
CGTGTAGCATTTTGTGTGTGGTGGTTTGTCCATCGTGTGATGGGTGTGTC
CCCACATCTGCAGTCCTAAATATATTTTGTTGCCGTTCCTTCTTTGTCTG
TCTCTCGACTTGTTCCGTCGGTGGTGCGTTCTGCTCCATCCTTTTGAATG
CTTGGGTTGTTGCGCGGAAGGCAGGGAAGGCGTCTCGCGTGATCCGTATG
CAATAA
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