prot_E-siliculosus-1a_M_contig84.16567.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig84.16567.1
Unique Nameprot_E-siliculosus-1a_M_contig84.16567.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length1061
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig84.16567.1 vs. uniprot
Match: A0A6H5KQG6_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQG6_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 6.980e-26
Identity = 67/120 (55.83%), Postives = 72/120 (60.00%), Query Frame = 0 
Query:  943 DALYSQGEEEGHPTPTGTSKFSSSNGGPGKPPVTWYTSSGTSLAGREGEEAVQLD--CCRRHDRRDGAGSTAAGRGAVEGGGKKTPDCCCKRCGCRVSLGPGNVLAGNGLNGVMGGGDGC 1060
            D   SQ E EGHPT TGTSK                              AVQL+   CRRHDRR GAG+T AG   ++GGGK TPDCCCKRCGCRVSLG GN +AGNGLNGVMG GDGC
Sbjct:  133 DVACSQEEGEGHPTLTGTSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQLNEYYCRRHDRRQGAGTTGAGTSFIQGGGKNTPDCCCKRCGCRVSLGSGNAVAGNGLNGVMGDGDGC 252
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16567.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQG6_9PHAE6.980e-2655.83Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 760..782
e-value: 710.0
score: 8.3
coord: 875..897
e-value: 1300.0
score: 6.4
coord: 806..828
e-value: 3900.0
score: 3.0
coord: 829..851
e-value: 290.0
score: 10.2
coord: 852..874
e-value: 8.0
score: 15.4
IPR039448Right handed beta helix domainPFAMPF13229Beta_helixcoord: 754..895
e-value: 2.5E-15
score: 56.7
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 667..952
e-value: 7.1E-19
score: 69.8
NoneNo IPR availablePANTHERPTHR22990F-BOX ONLY PROTEINcoord: 718..940
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..1060
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.464
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 680..943

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig84contigE-siliculosus-1a_M_contig84:677897..690078 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig84.16567.1mRNA_E-siliculosus-1a_M_contig84.16567.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig84 677461..696166 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig84.16567.1 ID=prot_E-siliculosus-1a_M_contig84.16567.1|Name=mRNA_E-siliculosus-1a_M_contig84.16567.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1061bp
MAVAAAAAAAAAAAAAALPAKSGAAVGVPKGPDGGGGEKRGGLDGGITGH
GNGGGGDGGDDSGGVSRATPRPAIETGSRPPPDPAPLLLLPAGTPGVGAG
PRVPPGRLAAVETAQQSGREGFPHLTMASLERFLEESLASSCSTGDDVTG
GAGDDTTTKDNTTANNLGKRSSTTTTTSSSSSTSADNRIFRLPSSTIDGD
GPSSFSSSPSNKEALFFLVRSRSRGSSRVGSARDAAVGDAEENLERLLSS
RWPDRVRVFDSLVEACGAAAAAGGARGGRRKRRAEKHTASAAAATAAAAA
PAVAVARVVAAGPAVAVSAEPAQVPEPFQAPVQAPVQAPVQAPVRQPVPE
PGGSIPHPFSPQAPPPPQPTPPEAAAAAAAAVGWSSGRGSGGKGPKGEAV
VTVVVLGGTHDAGRGGLRFTGGGIRIVGVSAADGRLPTVEGRRCSHAIKC
TGRGVSITSLRVVAGASTNTDDDEDRPHAPLSPTLAPTPATELPTTVQDG
KRAADDHRRALALAPAIARRLPTPTMMTTTTTTTVRDRKCATATARSAEG
GTPNNTKYDDDHNHHAPLTPTLAPAPAAAPRLPAPTPTTTTITAARGGKD
ATATAGLARKGGVVGGGPGGGARRKRPRLVFDRNAAQQLVRDSTAAAAAA
SVDSDRRQGRRRRVSRDKAPHCVETRRGLAPAHAISVEGGSVTISGCDVS
SRLPCACVCAAGGGTLTRLEHTRLSDGLGMGLLVCGKAEASASECDFEGM
GAAGVEARGGSTVSLSACTVSGCGKSGVFAQAFSRLRLSRCDVAGNQFAG
AEAMRNASLALEACSIVNSRRGGVLVHVASRATLTDCTVAGSCLSGLDVR
TGAEALVEACTIRGGRASGIYVSTGGSVRVSSTLIEGNRLAAVEVKADRQ
PPPPPPPPPPSNSSNNNKSGYDDDGDNNNDNNDNNDNDNNESDALYSQGE
EEGHPTPTGTSKFSSSNGGPGKPPVTWYTSSGTSLAGREGEEAVQLDCCR
RHDRRDGAGSTAAGRGAVEGGGKKTPDCCCKRCGCRVSLGPGNVLAGNGL
NGVMGGGDGC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
IPR039448Beta_helix
IPR006626PbH1