mRNA_E-siliculosus-1a_M_contig84.16572.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig84.16572.1
Unique NamemRNA_E-siliculosus-1a_M_contig84.16572.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig84contigE-siliculosus-1a_M_contig84:733827..734990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size693
Model size1164
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig84.16572.1prot_E-siliculosus-1a_M_contig84.16572.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig84 733974..734666 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936282.25239-UTR-E-siliculosus-1a_M_contig84:733826..7339731622936282.25239-UTR-E-siliculosus-1a_M_contig84:733826..733973Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 733827..733973 +
1696251006.908532-UTR-E-siliculosus-1a_M_contig84:733826..7339731696251006.908532-UTR-E-siliculosus-1a_M_contig84:733826..733973Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 733827..733973 +
1622936282.3312814-UTR-E-siliculosus-1a_M_contig84:734666..7349901622936282.3312814-UTR-E-siliculosus-1a_M_contig84:734666..734990Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 734667..734990 +
1696251006.9344885-UTR-E-siliculosus-1a_M_contig84:734666..7349901696251006.9344885-UTR-E-siliculosus-1a_M_contig84:734666..734990Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 734667..734990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936282.3167684-CDS-E-siliculosus-1a_M_contig84:733973..7346661622936282.3167684-CDS-E-siliculosus-1a_M_contig84:733973..734666Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 733974..734666 +
1696251006.9221194-CDS-E-siliculosus-1a_M_contig84:733973..7346661696251006.9221194-CDS-E-siliculosus-1a_M_contig84:733973..734666Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 733974..734666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig84.16572.1

>prot_E-siliculosus-1a_M_contig84.16572.1 ID=prot_E-siliculosus-1a_M_contig84.16572.1|Name=mRNA_E-siliculosus-1a_M_contig84.16572.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=231bp
MIMRPCFVVRSDCSIVLPIACAPRLPQHPSPSPAVLESPLQVAAFHNREK
IVTSPQKGSLYRSCPSLASKETTLCIHTAVRRKRGATHTTDPSLESLVIT
PPIFLASVLLLKLAVFSRGFRLRSKERTLPVYIFPLFVYFSTTVLPPGMF
VWLISHGGTLSSCGACVVLTCSQRFGDALDPSNAVETDGTVAKIHEPTRR
DVGPCCTWSSRGPDLCRRAAFIASLESVDG*
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mRNA from alignment at E-siliculosus-1a_M_contig84:733827..734990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig84.16572.1 ID=mRNA_E-siliculosus-1a_M_contig84.16572.1|Name=mRNA_E-siliculosus-1a_M_contig84.16572.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:733827..734990+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACATCAAGATGAAGTCCTGCGTTGTAGCCGCTGCCTGCGTGGCCGGAGC
CCAAGCCTTCGTGGCACCCAGGTGAGAACAGCTATCGGCTTGACCGCATG
CGGTGGGGTTTCTGTGACCTCTCCTCTCGTTTGTGGGTGCTGTCAGAATG
ATCATGCGCCCGTGTTTTGTAGTTCGCAGTGATTGTTCAATAGTTCTACC
TATCGCATGCGCTCCTCGTCTGCCCCAGCACCCAAGCCCCTCTCCAGCTG
TTCTGGAGAGCCCGCTTCAGGTTGCAGCGTTCCATAATAGAGAGAAAATC
GTCACCAGTCCCCAAAAAGGTTCTTTGTATCGATCATGTCCTTCTCTTGC
TTCGAAAGAAACTACATTATGTATACACACTGCTGTTCGACGGAAACGAG
GCGCCACCCACACAACAGACCCCAGTCTGGAATCACTGGTGATCACTCCC
CCAATATTTCTCGCATCAGTATTGTTGTTGAAGCTAGCTGTGTTTTCGCG
TGGATTTCGCCTACGTAGTAAGGAGCGCACCCTTCCTGTTTATATATTTC
CATTATTTGTATATTTTTCGACGACGGTTTTACCTCCCGGTATGTTCGTG
TGGTTGATTTCGCACGGCGGCACTCTGTCCTCGTGCGGCGCCTGCGTAGT
ACTTACATGCAGTCAGCGCTTCGGCGACGCCCTTGACCCTTCAAATGCCG
TCGAGACTGATGGAACCGTTGCGAAGATTCATGAACCGACCAGGCGTGAC
GTTGGACCGTGTTGTACTTGGAGCAGTCGCGGTCCTGACCTGTGCAGACG
AGCTGCTTTCATTGCGTCCCTCGAGTCCGTTGACGGGTAAAACGATGGTC
ACACCGATCCAGTGACAAGGCTTTTCCTTCCCCTTCACCGACAACGTGAA
ATAGGCGCGGAACACACATGGCGAACTGCTCTCACGACCGCGAAACCTCG
TGTTGTACTTGTTAAAACTTGACCGTATCTCCAAGACTGCAAGGTAATGT
AAATCACGGAACATCTCTCTTGTCCTCAATAAACTGGACATCAGCACCTT
TTTGATATTTGTAAATATTAATGATCCGCCAGTACCAGTTCTGCTCTCAG
TTTCTCAACGGAGTTGAATATTTTCAATACCTCATCCTTCTCCCTGTTTT
CCCCTTCCCCTTTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig84:733827..734990+

>mRNA_E-siliculosus-1a_M_contig84.16572.1 ID=mRNA_E-siliculosus-1a_M_contig84.16572.1|Name=mRNA_E-siliculosus-1a_M_contig84.16572.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1386bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:733827..734990+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATCATGCGCCCGTGTTTTGTAGTTCGCAGTGATTGTTCAATAGTTCT
ACCTATCGCATGCGCTCCTCGTCTGCCCCAGCACCCAAGCCCCTCTCCAG
CTGTTCTGGAGAGCCCGCTTCAGGTTGCAGCGTTCCATAATAGAGAGAAA
ATCGTCACCAGTCCCCAAAAAGGTTCTTTGTATCGATCATGTCCTTCTCT
TGCTTCGAAAGAAACTACATTATGTATACACACTGCTGTTCGACGGAAAC
GAGGCGCCACCCACACAACAGACCCCAGTCTGGAATCACTGGTGATCACT
CCCCCAATATTTCTCGCATCAGTATTGTTGTTGAAGCTAGCTGTGTTTTC
GCGTGGATTTCGCCTACGTAGTAAGGAGCGCACCCTTCCTGTTTATATAT
TTCCATTATTTGTATATTTTTCGACGACGGTTTTACCTCCCGGTATGTTC
GTGTGGTTGATTTCGCACGGCGGCACTCTGTCCTCGTGCGGCGCCTGCGT
AGTACTTACATGCAGTCAGCGCTTCGGCGACGCCCTTGACCCTTCAAATG
CCGTCGAGACTGATGGAACCGTTGCGAAGATTCATGAACCGACCAGGCGT
GACGTTGGACCGTGTTGTACTTGGAGCAGTCGCGGTCCTGACCTGTGCAG
ACGAGCTGCTTTCATTGCGTCCCTCGAGTCCGTTGACGGGTAAATGATCA
TGCGCCCGTGTTTTGTAGTTCGCAGTGATTGTTCAATAGTTCTACCTATC
GCATGCGCTCCTCGTCTGCCCCAGCACCCAAGCCCCTCTCCAGCTGTTCT
GGAGAGCCCGCTTCAGGTTGCAGCGTTCCATAATAGAGAGAAAATCGTCA
CCAGTCCCCAAAAAGGTTCTTTGTATCGATCATGTCCTTCTCTTGCTTCG
AAAGAAACTACATTATGTATACACACTGCTGTTCGACGGAAACGAGGCGC
CACCCACACAACAGACCCCAGTCTGGAATCACTGGTGATCACTCCCCCAA
TATTTCTCGCATCAGTATTGTTGTTGAAGCTAGCTGTGTTTTCGCGTGGA
TTTCGCCTACGTAGTAAGGAGCGCACCCTTCCTGTTTATATATTTCCATT
ATTTGTATATTTTTCGACGACGGTTTTACCTCCCGGTATGTTCGTGTGGT
TGATTTCGCACGGCGGCACTCTGTCCTCGTGCGGCGCCTGCGTAGTACTT
ACATGCAGTCAGCGCTTCGGCGACGCCCTTGACCCTTCAAATGCCGTCGA
GACTGATGGAACCGTTGCGAAGATTCATGAACCGACCAGGCGTGACGTTG
GACCGTGTTGTACTTGGAGCAGTCGCGGTCCTGACCTGTGCAGACGAGCT
GCTTTCATTGCGTCCCTCGAGTCCGTTGACGGGTAA
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