Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 345 |
| Model size | 415 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927550.002129-UTR-E-siliculosus-1a_F_contig1049:28256..28326 | 1622927550.002129-UTR-E-siliculosus-1a_F_contig1049:28256..28326 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1049 28257..28326 + |
| 1696318580.8953745-UTR-E-siliculosus-1a_F_contig1049:28256..28326 | 1696318580.8953745-UTR-E-siliculosus-1a_F_contig1049:28256..28326 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1049 28257..28326 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927550.0159192-CDS-E-siliculosus-1a_F_contig1049:28326..28671 | 1622927550.0159192-CDS-E-siliculosus-1a_F_contig1049:28326..28671 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1049 28327..28671 + |
| 1696318580.9050245-CDS-E-siliculosus-1a_F_contig1049:28326..28671 | 1696318580.9050245-CDS-E-siliculosus-1a_F_contig1049:28326..28671 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1049 28327..28671 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1049.349.1 >prot_E-siliculosus-1a_F_contig1049.349.1 ID=prot_E-siliculosus-1a_F_contig1049.349.1|Name=mRNA_E-siliculosus-1a_F_contig1049.349.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=115bp
MSLTTAKEVEGRCGSGRVWLLEGRQREIRKGYYLYVRVAHCWWYKPPVST
KTPSCRDTFSSCFCWLHDTDQLKRQIAFLYAIHTTLFRVKLKNSRDRTSQ
TDRAPGVVIHGSSCD back to topmRNA from alignment at E-siliculosus-1a_F_contig1049:28257..28671+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1049.349.1 ID=mRNA_E-siliculosus-1a_F_contig1049.349.1|Name=mRNA_E-siliculosus-1a_F_contig1049.349.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=415bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1049:28257..28671+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCTTCTTGGCATTTTCGAATAATTTTTGACGAAATTGCTGACACCACC
GTCATCGTGAGACGGGGCGGATGTCCCTAACGACAGCGAAGGAGGTGGAG
GGTCGTTGCGGGAGTGGTAGGGTTTGGCTGCTGGAGGGGCGACAGAGGGA
AATCCGCAAGGGGTATTACTTGTACGTCAGGGTTGCGCACTGTTGGTGGT
ATAAACCGCCCGTGAGCACGAAGACTCCTTCATGTAGGGACACTTTTAGT
TCTTGTTTTTGTTGGCTCCACGACACTGATCAACTCAAGCGACAAATCGC
TTTTTTGTACGCCATACATACCACACTTTTTCGGGTGAAATTGAAAAATT
CGCGCGATCGCACGTCACAAACGGATCGAGCACCAGGTGTTGTGATTCAT
GGAAGTAGCTGCGAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1049:28257..28671+ >mRNA_E-siliculosus-1a_F_contig1049.349.1 ID=mRNA_E-siliculosus-1a_F_contig1049.349.1|Name=mRNA_E-siliculosus-1a_F_contig1049.349.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1049:28257..28671+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCCCTAACGACAGCGAAGGAGGTGGAGGGTCGTTGCGGGAGTGGTAG
GGTTTGGCTGCTGGAGGGGCGACAGAGGGAAATCCGCAAGGGGTATTACT
TGTACGTCAGGGTTGCGCACTGTTGGTGGTATAAACCGCCCGTGAGCACG
AAGACTCCTTCATGTAGGGACACTTTTAGTTCTTGTTTTTGTTGGCTCCA
CGACACTGATCAACTCAAGCGACAAATCGCTTTTTTGTACGCCATACATA
CCACACTTTTTCGGGTGAAATTGAAAAATTCGCGCGATCGCACGTCACAA
ACGGATCGAGCACCAGGTGTTGTGATTCATGGAAGTAGCTGCGACATGTC
CCTAACGACAGCGAAGGAGGTGGAGGGTCGTTGCGGGAGTGGTAGGGTTT
GGCTGCTGGAGGGGCGACAGAGGGAAATCCGCAAGGGGTATTACTTGTAC
GTCAGGGTTGCGCACTGTTGGTGGTATAAACCGCCCGTGAGCACGAAGAC
TCCTTCATGTAGGGACACTTTTAGTTCTTGTTTTTGTTGGCTCCACGACA
CTGATCAACTCAAGCGACAAATCGCTTTTTTGTACGCCATACATACCACA
CTTTTTCGGGTGAAATTGAAAAATTCGCGCGATCGCACGTCACAAACGGA
TCGAGCACCAGGTGTTGTGATTCATGGAAGTAGCTGCGAC back to top
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