mRNA_E-siliculosus-1a_M_contig83.16467.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig83.16467.1 vs. uniprot
Match: A0A6H5KQZ1_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ1_9PHAE) HSP 1 Score: 1343 bits (3476), Expect = 0.000e+0 Identity = 777/857 (90.67%), Postives = 793/857 (92.53%), Query Frame = 2
Query: 953 PAVFEALVPMMSTEVPLDVCTHACQLLGASLFVASRQSSPETWVGLVKVIPEGGVDGLLECLRVAPARAKAARALFYAAKVPLAGGTGGELIESRGGVSIILEVLESLPLAPPPTAAVETKGLRVWLCATLQPVMADRPRAVQAFLACRGIPLLCRQLVAGPADIAVHVCGVLASALRSGGSGGVADSSAAVPRSAIEAVDASIIDPLLGMLAGGTNKDAHASALAMELLVVLASHPPFSGRLRAAGTIPAVAACLEDHPARGAAAAEPVARASLMQLALIVLTGFLSGDGDQPSAVAVAAAGEVDEVAAEIAATRAHVRVVALLSAPDPKLRFTAAELALQLSRRCHPGPAPNSXXXXXXXXXXXIAKDMIEAGGLGALWTACSDPSPMARPVALEALAAMLGTAAAMSRSNASSEAVLALVSEGAVGGLVRRHVDPALSALGRRGRGGTGSGSATTPGDAAAAS----VATSALLALHFLAANPDPAVHGLFVVAAGVDEQXXXXXXXXXXS-TWSTILSCVEAGAEGRGGPAFLEAALLAAGSVCGAPPLPVLGGGGGAVAPSGSVAADEIDRILPAYQARAQTADCLLAAASATSRGLATRAVALLDAGGSSGRGGFLSTDSEALSSAKLTRAAIRVVWSLSRGPSSATLAAHGTLPRLMGRMSCLRRKDSGGXXXXADGARGDMAAGVLVLDTIAAFLSLEDSSNGHRRGGSKDSAAPVSPATATTIGRTVDELCELVLHGTTAKRAATADDAGDGGSSAAAAGSLGPRSLALLAKAAANPRLRPMLVDSPKFPAVLNLLMVERHLDGASSNNEISLEVALGALSVVEAAVSDERTASRLVKLGVVSKLAAL 3508
PAVFEALVPMMSTEVPLDVCTHACQLLGASLFVASRQSSP+TWV LVKVIPEGGVDGLLECLRVAPARAKAARALFYAAKVPLAGGTGGELIESRGGVSI+LEVLESLPLAPPPTAAVETKGLRVWLCATLQPVMADRPRAVQAFLACRGIPLLCRQLVAGPADIAVHVCGVLASALRSG AAVPRSAIEAVDASIIDPLLGMLAGGT+KDAHASALAMELLVVLASHPPFSGRLRAAGTIPAVAACLEDHPARGAAAAEPV RASLMQLALIVLTGFL GDGDQP+A A A +VDE+AAEIAATRAHVRVVALLSAPDPKLRFT AELALQLSRRC PGPAPNS IAKDMIEAGGLGALW ACSDPSPMARPVALEALAAMLGTAAAMSRS ASSEAVLALVSEGAV GLVR+HVDPALS LGRRGRG G GSAT PGDAAAA+ VATSALLALHFLAANPDPAVHGLFVVAAGVDEQXXXXXXXXXXS TWSTILS VEAGAEGRGGPAFLEAALLAAGSVCGAPPLPVLG GGGAVAPSGSVAADE+DR+LPAYQARAQTA+CLLAAASATSRGLATRAVALLDAGGSSG GGF+STDSEALSSAKLTRAAIRVVWSLSRGPSSATLAAHGTLPRLMGRMSCLR K SGG AD ARGD AAGVLVLDTIAAFLSLEDSS+GHRRG S+DS APVSPATA TIGRTVDELCELVLHGTTA RA TA +AGDGGSS AAAGSLGPRSLALLAKAAANPRLRPMLVDSPKFPAVL+LLMV RHLDGASSNN I LEVALGALSVVEAAVSDERTASRLVKLGVVSKLAAL
Sbjct: 126 PAVFEALVPMMSTEVPLDVCTHACQLLGASLFVASRQSSPKTWVDLVKVIPEGGVDGLLECLRVAPARAKAARALFYAAKVPLAGGTGGELIESRGGVSIMLEVLESLPLAPPPTAAVETKGLRVWLCATLQPVMADRPRAVQAFLACRGIPLLCRQLVAGPADIAVHVCGVLASALRSGXXXXXXXXXAAVPRSAIEAVDASIIDPLLGMLAGGTSKDAHASALAMELLVVLASHPPFSGRLRAAGTIPAVAACLEDHPARGAAAAEPVTRASLMQLALIVLTGFLRGDGDQPAAAAEA---KVDEIAAEIAATRAHVRVVALLSAPDPKLRFTTAELALQLSRRCRPGPAPNSNRGGGGG----IAKDMIEAGGLGALWRACSDPSPMARPVALEALAAMLGTAAAMSRSRASSEAVLALVSEGAVEGLVRQHVDPALSVLGRRGRGVAGGGSATIPGDAAAAATXXXVATSALLALHFLAANPDPAVHGLFVVAAGVDEQXXXXXXXXXXSSTWSTILSSVEAGAEGRGGPAFLEAALLAAGSVCGAPPLPVLGVGGGAVAPSGSVAADEVDRVLPAYQARAQTANCLLAAASATSRGLATRAVALLDAGGSSGGGGFISTDSEALSSAKLTRAAIRVVWSLSRGPSSATLAAHGTLPRLMGRMSCLRLKGSGGGGG-ADRARGDTAAGVLVLDTIAAFLSLEDSSSGHRRGSSEDSVAPVSPATAATIGRTVDELCELVLHGTTANRA-TAYNAGDGGSSGAAAGSLGPRSLALLAKAAANPRLRPMLVDSPKFPAVLDLLMVGRHLDGASSNNAIPLEVALGALSVVEAAVSDERTASRLVKLGVVSKLAAL 973
BLAST of mRNA_E-siliculosus-1a_M_contig83.16467.1 vs. uniprot
Match: D7FT64_ECTSI (E3 ubiquitin-protein ligase Nedd-4, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT64_ECTSI) HSP 1 Score: 1028 bits (2657), Expect = 0.000e+0 Identity = 618/813 (76.01%), Postives = 628/813 (77.24%), Query Frame = 2
Query: 953 PAVFEALVPMMSTEVPLDVCTHACQLLGASLFVASRQSSPETWVGLVKVIPEGGVDGLLECLRVAPARAKAARALFYAAKVPLAGGTGGELIESRGGVSIILEVLESLPLAPPPTAAVETKGLRVWLCATLQPVMADRPRAVQAFLACRGIPLLCRQLVAGPADIAVHVCGVLASALRSGGSGGVADSSAAVPRSAIEAVDASIIDPLLGMLAGGTNKDAHASALAMELLVVLASHPPFSGRLRAAGTIPAVAACLEDHPARGAAAA--EPVARASLMQLALIVLTGFLSGDGDQPSAVAVAAAGEVDEVAAEIAATRAHVRVVALLSAPDPKLRFTAAELALQLSRRCHPGPAPNSXXXXXXXXXXXIAKDMIEAGGLGALWTACSDPSPMARPVALEALAAMLGTAAAMSRSNASSEAVLALVSEGAVGGLVRRHVDPALSALGRRGRGGTGSGSATTPGDAAAASVATSALLALHFLAANPDPAVHGLFVVAAGVDEQXXXXXXXXXXSTWSTILSCVEAGAEGRGGPAFLEAALLAAGSVCGAPPLPVLGGGGGAVAPSGSVAADEIDRILPAYQARAQTADCLLAAASATSRGLATRAVALLDAGGSSGRGGFLSTDSEALSSAKLTRAAIRVVWSLSRGPSSATLAAHGTLPRLMGRMSCLRRKDSGGXXXXADGARGDMAAGVLVLDTIAAFLSLEDSSNGHRRGGSKDSAAPVSPATATTIGRTVDELCELVLHGTTAKRAATADDAGDGGSSAAAAGSLGPRSLALLAKAAANPRLRPMLVDSPKFPAVLNLLMVERHLDGASS 3385
PAVF+ALVPMMSTEVPLDVCTHACQLLGASLFVASRQSSPETWVGLVKVIPEG VDGLLECLRVAPARAKAARALFYAAKVPLAGGTGGELIESRGGVSI+LEVLESLPLAPPPTAAVETKGLRVWLCATLQPVMADRPRAVQAFLACRGIPLLCRQL AGPADIAVHVCGVLASALRSGG+G A SSAAVPRSAIE VDASIIDPLLGMLAGGTNKDAHASALAMELLVVLASHPPFSGRLRAAGTIPAVAACLEDHPARGAAAA EPVARASLMQLALIVLTGFL GDGDQP+AVA A GEVDEVAAEIAATRAHVRVVALLSAPDPKLRFTAAELALQLSRRC PGPA XXXXXXX IAKDMIEAGGLGALW+ACSDPSPMARPVALEALAAMLGTAAAMSRS+ASSEAVLALVSEGAVGGLVR+HVDPALS LGRRGRG T VALLDAGGSSGRGGFLSTDSEALSSAKLTRAAIRVVWSLSRGPSSATLAAHGTLPRLMG MSCLRRK SGG ADGARGD AAGVLVLDTIAAFLSLEDSS+GHRRGGSKDS APV P+TATTIGRTVDELCELVLHGTT KRA TADDAGD GSS AAAGSLGPRSLALLAKAAANPRLRPMLVDSPKFPAVL+LLMVERHLDGASS
Sbjct: 292 PAVFQALVPMMSTEVPLDVCTHACQLLGASLFVASRQSSPETWVGLVKVIPEGCVDGLLECLRVAPARAKAARALFYAAKVPLAGGTGGELIESRGGVSIMLEVLESLPLAPPPTAAVETKGLRVWLCATLQPVMADRPRAVQAFLACRGIPLLCRQLAAGPADIAVHVCGVLASALRSGGAGAGAGSSAAVPRSAIETVDASIIDPLLGMLAGGTNKDAHASALAMELLVVLASHPPFSGRLRAAGTIPAVAACLEDHPARGAAAAAAEPVARASLMQLALIVLTGFLRGDGDQPAAVA--ATGEVDEVAAEIAATRAHVRVVALLSAPDPKLRFTAAELALQLSRRCRPGPAXXXXXXXXXXG---IAKDMIEAGGLGALWSACSDPSPMARPVALEALAAMLGTAAAMSRSSASSEAVLALVSEGAVGGLVRQHVDPALSVLGRRGRGVT------------------------------------------------------------------------------------------------------------------------------------------------------VALLDAGGSSGRGGFLSTDSEALSSAKLTRAAIRVVWSLSRGPSSATLAAHGTLPRLMGHMSCLRRKGSGGGG--ADGARGDTAAGVLVLDTIAAFLSLEDSSSGHRRGGSKDSVAPVPPSTATTIGRTVDELCELVLHGTTTKRA-TADDAGDDGSSGAAAGSLGPRSLALLAKAAANPRLRPMLVDSPKFPAVLDLLMVERHLDGASS 946
BLAST of mRNA_E-siliculosus-1a_M_contig83.16467.1 vs. uniprot
Match: K3WWX0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWX0_GLOUD) HSP 1 Score: 78.6 bits (192), Expect = 8.090e-11 Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 3
Query: 525 FSPHLIPDDDRSQCAVCGERFAALRRRHHCRCCGEVVCATCSPTKLLMYVSEPGYERPRRACQTCAAHIAAGEY 746
F+P L+ DD C+ CG +F LRRRHHC+ CG V CA C+ K+ + + PGYE+ + CQ C ++ AG+Y
Sbjct: 256 FAPILVRDDSAG-CSQCGSKFGVLRRRHHCKLCGNVFCAECTAHKVNLPIDGPGYEQKQPVCQRCFRNVEAGDY 328
BLAST of mRNA_E-siliculosus-1a_M_contig83.16467.1 vs. uniprot
Match: A0A5D6XFE7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFE7_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 3.120e-10 Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 3
Query: 525 FSPHLIPDDDRSQCAVCGERFAALRRRHHCRCCGEVVCATCSPTKLLMYVSEPGYERPRRACQTCAAHIAAGEY 746
F+P L+ DD C C +F LRRRHHCR CG CA C+P K+ + + PGYE+ CQ C ++ G++
Sbjct: 253 FAPILVRDDAAIGCFQCSNKFGVLRRRHHCRLCGNAFCAECTPNKVNLPIDGPGYEQKLPVCQRCFRNVETGDF 326
BLAST of mRNA_E-siliculosus-1a_M_contig83.16467.1 vs. uniprot
Match: A0A8C9EQC1_PAVCR (FYVE-type domain-containing protein n=1 Tax=Pavo cristatus TaxID=9049 RepID=A0A8C9EQC1_PAVCR) HSP 1 Score: 70.5 bits (171), Expect = 3.590e-10 Identity = 35/79 (44.30%), Postives = 42/79 (53.16%), Query Frame = 3
Query: 495 PVDKSREDITFSPHLIPDDDRSQCAVCGERFAALRRRHHCRCCGEVVCATCSP-TKLLMYVSEPGYERPRRACQTCAAH 728
P+ S D T P +PD S C+ C F LRRRHHCR CG++ CA CSP T L + +P RP R C C H
Sbjct: 90 PLCPSPRDATGRPEWVPDSSCSHCSACRAPFTLLRRRHHCRSCGKIFCARCSPHTAALPHYGQP---RPVRVCTHCHCH 165
BLAST of mRNA_E-siliculosus-1a_M_contig83.16467.1 vs. uniprot
Match: A0A7S3UVM8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVM8_HETAK) HSP 1 Score: 70.9 bits (172), Expect = 3.700e-10 Identity = 51/227 (22.47%), Postives = 80/227 (35.24%), Query Frame = 3
Query: 96 PLPEGWEERRDEQGHTYYVDHNTRRSSWRDPRLIQTGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGMSESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGGAGPVDKSREDITFSPHLIPDDDRSQCAVCGERFAALRRRHHCRCCGEVVCATCSPTKLLMYVSEPGYERPRRACQTCAAHIAAGEYSCNARYALAI 776
PLPEGWEE +DEQG ++++H T+ ++W DPR Q + +S +G A + P +PD+ R +C + GERF L R+HHC+CCG+VV + KL++ + +E+ ++ C C H A + C R L +
Sbjct: 8 PLPEGWEEAQDEQGRIFFINHLTQTTTWDDPRDSQANAKP---------------------------------------------VLQSNLSAYNTSNGTPEQQSDLVEATPVPLPEDDTFQSLAAAQRGAAAAL--------VLPAEVPDEARDRCPLSGERFTLLNRKHHCKCCGDVVSRGVTE-KLIIPLPGDDFEKEKKVCTDCVEHCKASDPECLKRCLLVL 180
BLAST of mRNA_E-siliculosus-1a_M_contig83.16467.1 vs. uniprot
Match: A0A7S4KLQ6_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KLQ6_9EUKA) HSP 1 Score: 68.6 bits (166), Expect = 4.610e-10 Identity = 27/70 (38.57%), Postives = 46/70 (65.71%), Query Frame = 3
Query: 510 REDITFSPHLIPDDDRSQCAVCGERFAALRRRHHCRCCGEVVCATCSPTKLLMYVSEPGYERPRRACQTC 719
+E++T +P+ PD + + C CG RF+ ++RRHHCR CG++ C CS ++ + E G+ P+R+C+ C
Sbjct: 44 QENVTQAPNWQPDRESASCTKCGARFSLMKRRHHCRKCGDIFCDDCSYFRVSL--PELGFTNPQRSCERC 111
BLAST of mRNA_E-siliculosus-1a_M_contig83.16467.1 vs. uniprot
Match: A0A8C6YY84_NOTPE (FYVE-type domain-containing protein n=1 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C6YY84_NOTPE) HSP 1 Score: 68.2 bits (165), Expect = 2.590e-9 Identity = 33/73 (45.21%), Postives = 40/73 (54.79%), Query Frame = 3
Query: 504 KSREDITFSPHLIPDDDRSQCAVCGERFAALRRRHHCRCCGEVVCATCSP-TKLLMYVSEPGYERPRRACQTC 719
KS + P +PD SQC+ C F LRRRHHCR CG++ CA CSP T L + +P RP R C C
Sbjct: 102 KSHPGVRRLPEWVPDSSCSQCSACRAPFTLLRRRHHCRSCGKIFCARCSPHTAALPHFGQP---RPVRVCTHC 171
BLAST of mRNA_E-siliculosus-1a_M_contig83.16467.1 vs. uniprot
Match: A0A4D9CRT6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRT6_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 2.770e-9 Identity = 38/95 (40.00%), Postives = 51/95 (53.68%), Query Frame = 3
Query: 504 KSREDITFSPHLIPDDDRSQCAVCGERFA-ALRRRHHCRCCGEVVCATCSPTKLLM------YVSEPGYERPRRACQTCAAHIAA-GEYSCNARY 764
K+ ++ P +PD RS C +C +F +R RHHCRCCGE+VC CS KL++ + PG E R C C AH+A G + C RY
Sbjct: 196 KALKEDEVDPFYVPDSMRSGCFLCQVKFQLVVRGRHHCRCCGEIVCDKCSQGKLVLPREHESFKKGPGGELGHRVCDHCHAHVATHGNFRCMVRY 290
BLAST of mRNA_E-siliculosus-1a_M_contig83.16467.1 vs. uniprot
Match: B3RLQ3_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RLQ3_TRIAD) HSP 1 Score: 67.8 bits (164), Expect = 1.190e-8 Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 3
Query: 507 SREDITFSPHLIPDDDRSQCAVCGE-RFAALRRRHHCRCCGEVVCATCSPTKLLMYVSEPGYERPRRACQTC 719
SR++ +SP IPD++ +C C + +F A++RRHHCR CG VVC+ CS KLL+ ++P R C C
Sbjct: 138 SRKNNNYSPVWIPDNEAPECMACKKTKFTAIKRRHHCRKCGYVVCSNCSSNKLLLKHQS---DKPLRVCDNC 206 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig83.16467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig83.16467.1 >prot_E-siliculosus-1a_M_contig83.16467.1 ID=prot_E-siliculosus-1a_M_contig83.16467.1|Name=mRNA_E-siliculosus-1a_M_contig83.16467.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=849bp MMSTEVPLDVCTHACQLLGASLFVASRQSSPETWVGLVKVIPEGGVDGLLback to top mRNA from alignment at E-siliculosus-1a_M_contig83:225671..232313- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig83.16467.1 ID=mRNA_E-siliculosus-1a_M_contig83.16467.1|Name=mRNA_E-siliculosus-1a_M_contig83.16467.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6643bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:225671..232313- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig83:225671..232313- >mRNA_E-siliculosus-1a_M_contig83.16467.1 ID=mRNA_E-siliculosus-1a_M_contig83.16467.1|Name=mRNA_E-siliculosus-1a_M_contig83.16467.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5094bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:225671..232313- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |