mRNA_E-siliculosus-1a_F_contig1048.345.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1048.345.1 vs. uniprot
Match: D8LDX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX6_ECTSI) HSP 1 Score: 854 bits (2206), Expect = 5.770e-309 Identity = 469/520 (90.19%), Postives = 478/520 (91.92%), Query Frame = 3 Query: 90 RRTN*PGVSTSEYGALNYASELSSRAVAFKVTYYPTICIS--KVLACLGRRANVMRSRETTQLSLISTRAMANREMRTCKAERDRAFAELVYGRLFTRTGGIVRTWTAIIANIKRLLFLQGAVERAARQHLLEANMNRMAIVTRFMSQMALKRRRNRAVKILIGALSAFTNSNAIGRYAQRVKWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLHPPVPVPLMTTAMLLRPPSKASLPPSRPGTAETTPATSTSPSSNKRPNRRKGAGGQGGQKKGRARPKRQKSVVGREKKVENDTGGGGGQGSAGATLASTVPETAESNSAPPENASQPRRPPVYVSSEARHREIFSWLQRTRAKHCRDVINYERFTIFPCMVELLLQHERRTYGTRLQAVKHVIALRSFGRLSRVWTEGGYFSKMSHVLPPPPRMPRVFTPEEGDEMFDRAAAR*STTPSFTHAAASILEGGSEAHGAPQSGGAAGGTMPSEAVLIEVEAAXXXXXXXXTAGEAAVKAVLGSGSGAG 1643
RRT PGVST EY ALN ASELSSRAVAFK T +VL CLGRRA VMRSRETTQLSLISTRAMANREMRTCKAERDRAFAELV+GRLFTRTGGIVRTWTAIIANIKRLLFLQGAVERAARQHLLEANMNRMAIVTRFMSQMALKRRRNRAVKI+IGALSAFTNSNAIGRYAQRV WGTRHLQAVVRRRMACMTSHLTLLNRHWDRL+PPVP+PLMTTAML RPPSKASLPPSRPGTAETTPATS SPSSNKRPNRRKGAGGQGGQKKGR RPKRQKSVVGREKKVENDTGGGGGQGSA ATLASTVPETA+S SAPP+NA QPRRPPVYVSSEA+HREI SWLQRTRAKHCRDVINYERFTIFPCMVELLLQHERRTYGTRLQAVKHVIALRSFGRLSRVWTEGGYF+KMSHVLPPP RMPRVFTPEEGDEM DRAAAR STTPSFTHAAAS LEGG EAHGAPQSG AAGGTMP EAVLIEVEAA AGEAAVKAVLGSGSGAG
Sbjct: 32 RRTK-PGVSTYEYAALNRASELSSRAVAFKALESSTTSNKHDQVLPCLGRRAKVMRSRETTQLSLISTRAMANREMRTCKAERDRAFAELVHGRLFTRTGGIVRTWTAIIANIKRLLFLQGAVERAARQHLLEANMNRMAIVTRFMSQMALKRRRNRAVKIIIGALSAFTNSNAIGRYAQRVNWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPPVPLPLMTTAML-RPPSKASLPPSRPGTAETTPATSNSPSSNKRPNRRKGAGGQGGQKKGRTRPKRQKSVVGREKKVENDTGGGGGQGSARATLASTVPETADSTSAPPKNALQPRRPPVYVSSEAKHREILSWLQRTRAKHCRDVINYERFTIFPCMVELLLQHERRTYGTRLQAVKHVIALRSFGRLSRVWTEGGYFAKMSHVLPPPSRMPRVFTPEEGDEMLDRAAAR-STTPSFTHAAASFLEGGPEAHGAPQSGAAAGGTMPPEAVLIEVEAAATAAAEAARAGEAAVKAVLGSGSGAG 548
BLAST of mRNA_E-siliculosus-1a_F_contig1048.345.1 vs. uniprot
Match: A0A6H5L2P4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P4_9PHAE) HSP 1 Score: 666 bits (1718), Expect = 1.350e-236 Identity = 359/432 (83.10%), Postives = 377/432 (87.27%), Query Frame = 3 Query: 246 MRSRETTQLSLISTRAMANREMRTCKAERDRAFAELVYGRLFTRTGGIVRTWTAIIANIKRLLFL------------------------QGAVERAARQHLLEANMNRMAIVTRFMSQMALKRRRNRAVKILIGALSAFTNSNAIGRYAQRVKWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLHPPVPVPLMTTAMLLRPPSKASLPPSRPGTAETTPATSTSPSSNKRPNRRKGAGGQGGQKKGRARPKRQKSVVGREKKVENDTGGGGGQGSAGATLASTVPETAESNSAPPENASQPRRPPVYVSSEARHREIFSWLQRTRAKHCRDVINYERFT---------------IFPCMVELLLQHERRTYGTRLQAVKHVIALRSFGRLSRVWTEGGYFSKMSHVLPPPPRMPRVFTPEEGDEMFDRAAAR 1424
MRSRETTQL LIST+A+ANREMRTCKAERDRAFAELVYGRLFTRTGGIVRTWTAIIANIKRLLFL QGAVERAARQHLLEANMNRMAIVTRF+ QMALKRRRNRAVKILIGALSAFT+S+AIGRYAQRV WGTRHLQAVVRRRMACMTSHLTLLNRHWDRL+PPVP+PLMTT M LRPPS+ASLPPS+PGTA+TTPATSTSPSSNKRPNRRKGAGGQGG KKGR RPKRQKSVVGR+K+ +ND GGGGGQGSAGAT ASTVPETAESNSAP E A Q RRPPVYVSSEA+HREIFSWLQRTRAKHCRD+INYERFT IFPCMVELLLQHERRTYGTRLQAV+HVI LRSFGRLSRVWTEGGYF+KMSH LPPPPRMPRVFTPEEGDEMFDRAA+R
Sbjct: 1 MRSRETTQLFLISTKALANREMRTCKAERDRAFAELVYGRLFTRTGGIVRTWTAIIANIKRLLFLMPHIVHGADDNDISICLRSYDIVQQGAVERAARQHLLEANMNRMAIVTRFIGQMALKRRRNRAVKILIGALSAFTSSSAIGRYAQRVNWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPPVPLPLMTTGMPLRPPSEASLPPSQPGTAKTTPATSTSPSSNKRPNRRKGAGGQGGPKKGRTRPKRQKSVVGRKKQFQNDAGGGGGQGSAGATHASTVPETAESNSAPRETAPQRRRPPVYVSSEAKHREIFSWLQRTRAKHCRDIINYERFTPFSSLELPLNLKRTKIFPCMVELLLQHERRTYGTRLQAVRHVITLRSFGRLSRVWTEGGYFAKMSHALPPPPRMPRVFTPEEGDEMFDRAASR 432 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1048.345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1048.345.1 >prot_E-siliculosus-1a_F_contig1048.345.1 ID=prot_E-siliculosus-1a_F_contig1048.345.1|Name=mRNA_E-siliculosus-1a_F_contig1048.345.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=394bp MRSRETTQLSLISTRAMANREMRTCKAERDRAFAELVYGRLFTRTGGIVRback to top mRNA from alignment at E-siliculosus-1a_F_contig1048:30185..34219+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1048.345.1 ID=mRNA_E-siliculosus-1a_F_contig1048.345.1|Name=mRNA_E-siliculosus-1a_F_contig1048.345.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4035bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1048:30185..34219+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1048:30185..34219+ >mRNA_E-siliculosus-1a_F_contig1048.345.1 ID=mRNA_E-siliculosus-1a_F_contig1048.345.1|Name=mRNA_E-siliculosus-1a_F_contig1048.345.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2364bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1048:30185..34219+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |