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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1048.345.1 vs. uniprot
Match: D8LDX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX6_ECTSI) HSP 1 Score: 854 bits (2206), Expect = 5.770e-309 Identity = 469/520 (90.19%), Postives = 478/520 (91.92%), Query Frame = 3
Query: 90 RRTN*PGVSTSEYGALNYASELSSRAVAFKVTYYPTICIS--KVLACLGRRANVMRSRETTQLSLISTRAMANREMRTCKAERDRAFAELVYGRLFTRTGGIVRTWTAIIANIKRLLFLQGAVERAARQHLLEANMNRMAIVTRFMSQMALKRRRNRAVKILIGALSAFTNSNAIGRYAQRVKWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLHPPVPVPLMTTAMLLRPPSKASLPPSRPGTAETTPATSTSPSSNKRPNRRKGAGGQGGQKKGRARPKRQKSVVGREKKVENDTGGGGGQGSAGATLASTVPETAESNSAPPENASQPRRPPVYVSSEARHREIFSWLQRTRAKHCRDVINYERFTIFPCMVELLLQHERRTYGTRLQAVKHVIALRSFGRLSRVWTEGGYFSKMSHVLPPPPRMPRVFTPEEGDEMFDRAAAR*STTPSFTHAAASILEGGSEAHGAPQSGGAAGGTMPSEAVLIEVEAAXXXXXXXXTAGEAAVKAVLGSGSGAG 1643
RRT PGVST EY ALN ASELSSRAVAFK T +VL CLGRRA VMRSRETTQLSLISTRAMANREMRTCKAERDRAFAELV+GRLFTRTGGIVRTWTAIIANIKRLLFLQGAVERAARQHLLEANMNRMAIVTRFMSQMALKRRRNRAVKI+IGALSAFTNSNAIGRYAQRV WGTRHLQAVVRRRMACMTSHLTLLNRHWDRL+PPVP+PLMTTAML RPPSKASLPPSRPGTAETTPATS SPSSNKRPNRRKGAGGQGGQKKGR RPKRQKSVVGREKKVENDTGGGGGQGSA ATLASTVPETA+S SAPP+NA QPRRPPVYVSSEA+HREI SWLQRTRAKHCRDVINYERFTIFPCMVELLLQHERRTYGTRLQAVKHVIALRSFGRLSRVWTEGGYF+KMSHVLPPP RMPRVFTPEEGDEM DRAAAR STTPSFTHAAAS LEGG EAHGAPQSG AAGGTMP EAVLIEVEAA AGEAAVKAVLGSGSGAG
Sbjct: 32 RRTK-PGVSTYEYAALNRASELSSRAVAFKALESSTTSNKHDQVLPCLGRRAKVMRSRETTQLSLISTRAMANREMRTCKAERDRAFAELVHGRLFTRTGGIVRTWTAIIANIKRLLFLQGAVERAARQHLLEANMNRMAIVTRFMSQMALKRRRNRAVKIIIGALSAFTNSNAIGRYAQRVNWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPPVPLPLMTTAML-RPPSKASLPPSRPGTAETTPATSNSPSSNKRPNRRKGAGGQGGQKKGRTRPKRQKSVVGREKKVENDTGGGGGQGSARATLASTVPETADSTSAPPKNALQPRRPPVYVSSEAKHREILSWLQRTRAKHCRDVINYERFTIFPCMVELLLQHERRTYGTRLQAVKHVIALRSFGRLSRVWTEGGYFAKMSHVLPPPSRMPRVFTPEEGDEMLDRAAAR-STTPSFTHAAASFLEGGPEAHGAPQSGAAAGGTMPPEAVLIEVEAAATAAAEAARAGEAAVKAVLGSGSGAG 548
BLAST of mRNA_E-siliculosus-1a_F_contig1048.345.1 vs. uniprot
Match: A0A6H5L2P4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P4_9PHAE) HSP 1 Score: 666 bits (1718), Expect = 1.350e-236 Identity = 359/432 (83.10%), Postives = 377/432 (87.27%), Query Frame = 3
Query: 246 MRSRETTQLSLISTRAMANREMRTCKAERDRAFAELVYGRLFTRTGGIVRTWTAIIANIKRLLFL------------------------QGAVERAARQHLLEANMNRMAIVTRFMSQMALKRRRNRAVKILIGALSAFTNSNAIGRYAQRVKWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLHPPVPVPLMTTAMLLRPPSKASLPPSRPGTAETTPATSTSPSSNKRPNRRKGAGGQGGQKKGRARPKRQKSVVGREKKVENDTGGGGGQGSAGATLASTVPETAESNSAPPENASQPRRPPVYVSSEARHREIFSWLQRTRAKHCRDVINYERFT---------------IFPCMVELLLQHERRTYGTRLQAVKHVIALRSFGRLSRVWTEGGYFSKMSHVLPPPPRMPRVFTPEEGDEMFDRAAAR 1424
MRSRETTQL LIST+A+ANREMRTCKAERDRAFAELVYGRLFTRTGGIVRTWTAIIANIKRLLFL QGAVERAARQHLLEANMNRMAIVTRF+ QMALKRRRNRAVKILIGALSAFT+S+AIGRYAQRV WGTRHLQAVVRRRMACMTSHLTLLNRHWDRL+PPVP+PLMTT M LRPPS+ASLPPS+PGTA+TTPATSTSPSSNKRPNRRKGAGGQGG KKGR RPKRQKSVVGR+K+ +ND GGGGGQGSAGAT ASTVPETAESNSAP E A Q RRPPVYVSSEA+HREIFSWLQRTRAKHCRD+INYERFT IFPCMVELLLQHERRTYGTRLQAV+HVI LRSFGRLSRVWTEGGYF+KMSH LPPPPRMPRVFTPEEGDEMFDRAA+R
Sbjct: 1 MRSRETTQLFLISTKALANREMRTCKAERDRAFAELVYGRLFTRTGGIVRTWTAIIANIKRLLFLMPHIVHGADDNDISICLRSYDIVQQGAVERAARQHLLEANMNRMAIVTRFIGQMALKRRRNRAVKILIGALSAFTSSSAIGRYAQRVNWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPPVPLPLMTTGMPLRPPSEASLPPSQPGTAKTTPATSTSPSSNKRPNRRKGAGGQGGPKKGRTRPKRQKSVVGRKKQFQNDAGGGGGQGSAGATHASTVPETAESNSAPRETAPQRRRPPVYVSSEAKHREIFSWLQRTRAKHCRDIINYERFTPFSSLELPLNLKRTKIFPCMVELLLQHERRTYGTRLQAVRHVITLRSFGRLSRVWTEGGYFAKMSHALPPPPRMPRVFTPEEGDEMFDRAASR 432
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1182 |
| Model size | 1643 |
| Exons | 7 |
| Ec32 ortholog | Ec-23_003440.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1048.345.1 >prot_E-siliculosus-1a_F_contig1048.345.1 ID=prot_E-siliculosus-1a_F_contig1048.345.1|Name=mRNA_E-siliculosus-1a_F_contig1048.345.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=394bp
MRSRETTQLSLISTRAMANREMRTCKAERDRAFAELVYGRLFTRTGGIVR
TWTAIIANIKRLLFLQGAVERAARQHLLEANMNRMAIVTRFMSQMALKRR
RNRAVKILIGALSAFTNSNAIGRYAQRVKWGTRHLQAVVRRRMACMTSHL
TLLNRHWDRLHPPVPVPLMTTAMLLRPPSKASLPPSRPGTAETTPATSTS
PSSNKRPNRRKGAGGQGGQKKGRARPKRQKSVVGREKKVENDTGGGGGQG
SAGATLASTVPETAESNSAPPENASQPRRPPVYVSSEARHREIFSWLQRT
RAKHCRDVINYERFTIFPCMVELLLQHERRTYGTRLQAVKHVIALRSFGR
LSRVWTEGGYFSKMSHVLPPPPRMPRVFTPEEGDEMFDRAAAR* back to topmRNA from alignment at E-siliculosus-1a_F_contig1048:30185..34219+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1048.345.1 ID=mRNA_E-siliculosus-1a_F_contig1048.345.1|Name=mRNA_E-siliculosus-1a_F_contig1048.345.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4035bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1048:30185..34219+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCAAACAGTCGGGCGTCCGTGCTGCCGGAGAAGAAAGCAGCACGAGC
GTTGTCAGCACGCCAAGAGTGCCCGAGAGGGAAGGTAGGTTCCATTGACA
ACTGTAGTCCGTTTTCGGTGCTACCCAAATCAGCAGTAGATGGAGTGGTT
GCACCATTCCTCTCGTGTCTACAATGAAAACAGTTGACGTCCCAACCAAA
ATGCCATGCCACCAGAGACCCGAAAAAACGCTCGACCACGACGTTATGTT
TTTGCTCTCGATCTTCATTCCGGCAGTAGCGAAACCCACATTTCGCCGTA
CCAAAAATAGTCGGTTTGGAAACACAGACATCCGGCGGACAAACTAGCCT
GGTGTCTCGACGTCCGAATACGGTGCACTGAATTATGCAAGCGAACTGTC
TTCTAGAGCCGTAGCCTTCAAAGTCACATACGTCGTCTAACAACTTCCAA
CAAACATCATCAGGCACGTTCCTGCCTCCTGTAGGGCTGCTAGCTTGAAA
CCTGGGTTTAACAGATATCGTTGAGGGCTTGCTTTTGGTAGCCGGTGTAA
CGACAACGTGTTTAGACCCGGGCCCAGCCTATCTCCCACCCTACTGACAG
TTTTGCTAAGCCGTCCATGGGACACCCATGAGTCATCCATGGGCCGCCCA
TGGGTACTTCATGGGCCGCCCATGGGCTGCCCATGGGTGACTCATGGGCA
TGCCCATGGGCGGCCCACGAAGTGCCCACGAAGTGCCCAGCGTGGGCCTT
TCAACCTAGAACTTCGCCACCAGCATGTCAACCTAGACCTCAGCCACCCG
CACATCAACCTAGAACTTAGCCACCAGCGCCAACCTAGCACGTATCCTGT
GGGCTTAGGCTTAGGGTTAGGGTTAGGGTTATTAGCCGCTATAGTGCCCG
TTCCAAAGCAGGTAATATATTGTTTAGGGCTACACTGGTTCCGGTAGAAG
CTCTCATTGGCCGTCCATGGGCTTCCCATGGGTTGCCATGGGTCGCCCAT
GGGCTGCCCACGGGCTACCCATGGGTTGCCATGGGTCGTCCATGGGCTGC
CCACGGGCTACCCATGGACCGCCCATAGGCAACAAAGCGCCCATGGGCGG
TCCATGGGTAGCCCGTGGGCGTCGTTACCAAACTGTAGAAAGGGTGGGAG
ACCCGGTCAAGCCAAGGTCCCCTGGAGACCTGCTGGTGTTCGGAAGAATC
TTGGTTCACCCAAGGGTGCTCTACATCTAGACCTGGCGTTGAACACGGAA
ATCGATGGGCTCGAGGGACGTCGGCAACCCTTTCCGAAGAACTGATAGAT
CTTTCGACGATCATGCTGAAAACCATAGAGTAATAAGTCCTATGAAAACG
ATCGTGTCTCTCTGTCTTGCAGTACCCCACGATTTGTATTTCAAAGGTTC
TTGCTTGCTTGGGCAGGCGAGCGAACGTCATGCGCTCTCGCGAGACCACA
CAACTGTCCCTCATCTCAACGAGGGCTATGGCCAACCGAGAGATGCGCAC
TTGCAAGGCGGAACGGGATCGCGCCTTTGCTGAGCTTGTGTACGGCAGGT
TGTTTACCCGCACAGGTGGGATCGTTCGCACCTGGACGGCTATCATCGCC
AACATCAAGCGCCTCTTGTTCTTGGTGAGTTCTGTACTTGATAAAAATGC
ACGCTTTGTACGCATTACTCGTTATTTTTCTCGACTCTGCACTCTGTCCT
TCGAAAAAACCTCAGAATTCAGTGTTGTCCGGACAAAAGTTTGTTGCGTG
CGCTTTTCCCGAGGTCATCATGGCCATTATTCCCAACTATAGGCCACACA
TGATGAAAAAATGCCACACATTGTGCATGGTGCGGACGATAACGACATCT
CCATTTGCCTGCGATCGTACGCCAATGTTTCAGCAAGGAGCGGTGGAGAG
GGCCGCCCGTCAACATCTGTTGGAAGCGAACATGAAGTGAGACAAGTTCC
AAGTTCGAACGGGGATAATCTGTTTTCATTTCTGTTGTCTGCCAAAGCAG
AGTCACAATAGTCTGCAGATGGATTGGGGCGGTTTGGCACATCACCAGGG
TATCGAGATATGTCAGGCAACGTTACTCCAGTCGAACTCTCCTGAATCGC
GTTCACATCCTTGTTTGTCCCGTGGATGCGCTTCATGCCCCGTTCTGTTT
CCCGTTTCTTACGGCGCGACATAGCCGCATGGCCATCGTAACAAGGTTCA
TGAGCCAGATGGCCCTCAAGCGTCGGCGCAATAGAGCGGTTAAGATTCTC
ATCGGGGCTCTGAGCGCGTTTACCAACTCGAACGCCATCGGTCGCTACGC
GCAACGGGTCAAATGGGGTACTCGACACCTACAGGCCGTGGTGAGACGGC
GCATGGCCTGCATGACGTCCCACCTCACACTTCTCAATCGGCACTGGGAC
CGCCTGCACCCTCCTGTTCCCGTGCCGCTGATGACAACGGCGATGCTGCT
AAGACCGCCATCCAAAGCTTCACTGCCCCCGTCACGACCTGGAACAGCAG
AGACGACCCCGGCAACATCAACTTCGCCGAGCAGCAACAAACGCCCGAAT
CGGCGAAAAGGCGCCGGGGGGCAAGGGGGGCAAAAGAAAGGAAGAGCCCG
TCCGAAGCGCCAGAAGAGCGTCGTCGGTCGAGAAAAGAAGGTCGAAAATG
ATACTGGTGGCGGTGGTGGCCAGGGTTCCGCAGGTGCAACACTTGCGTCG
ACGGTGCCAGAGACGGCTGAAAGCAATAGTGCTCCCCCCGAGAACGCGTC
GCAACCCAGGAGGCCCCCTGTGTACGTCTCAAGCGAGGCGAGGCACAGAG
AAATATTTTCATGGCTACAGAGGACGAGGGCCAAGCATTGCAGGGACGTG
ATCAACTACGAGCGTTTCACGGTACGATCCCTAGCGCAAGCTTGAGTCAC
CTGTTCTCCCACCAGCGATGGTTTCCTAGGTCTGGTAGTGCCCAACCGTG
ACAAACGTGGGCAAGGAGACAAATCGAAAACGCGTGTCCCCGACAATGTG
TGGTGCGCGCTTGCGCGGCTGCCCGATGTCCTCCCGCATGAGTGTTTCGG
GAGCGTCGCAGGAGGCTCTATCTGTATTCTCTCCCATTCGGTCTCGCCGA
GCGTTGATATACGCTTGAATGAATTTCATGATATTTGACGCCTGTCGCTA
TTTCGACCCGGAACGAACAATGTATGCACGACTTACAGAGACGGCGGTGC
CCCTGAATCACTCAGCGTTATGCGCGACTTTCGTGTTTGACTGATCAGTC
TTGTTCTTCCCTCGAACTTCCACTGAATCTGAAATGCACGAAGATATTCC
CATGTATGGTGGAGCTGCTGCTGCAACACGAGCGAAGGACGTACGGCACC
CGCCTACAAGCCGTCAAGCACGTCATCGCTCTCCGAAGCTTCGGGCGGCT
CTCTCGAGTCTGGACGGAAGGCGGGTACTTCTCCAAAATGTCGCACGTCT
TGCCCCCGCCGCCGCGTATGCCGAGGGTGTTCACGCCGGAGGAGGGCGAC
GAGATGTTCGACCGCGCGGCCGCCAGGTAGTGCCGCTGTCGGCGGAGTAG
GCGGCGGCACAAATGTTTTCCAATTCACGTAGACGGTGGAAATTAGTGCC
TTACGCATAGATTAGGTAATGGCATATCCGCGTTTGAGGAAAGTCCAACG
TCTGTAGTCGCCAAAAACGCGCATGTTTCGTCTGGAGCCGATTTGGACGG
AAGGAGAGCGGTGAGCCACTGGAGAACATGCAAATGCAAAAAAAGAGAAG
ATAATCCGTTTGTTGACTGCATTCATCAACGATACGACCATGCACTTGTA
CGGCTATATTTGTTCCAGATCAACGACACCATCGTTCACACATGCTGCTG
CGAGTATCCTCGAAGGTGGGTCTGAGGCCCACGGAGCCCCACAATCAGGA
GGCGCTGCTGGCGGCACAATGCCGTCGGAAGCGGTATTGATCGAGGTGGA
AGCCGCGGCAGCTGCGGCGGCGGAAGCAGCAACGGCAGGGGAAGCGGCCG
TGAAAGCCGTCCTGGGGAGCGGGAGCGGAGCAGGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1048:30185..34219+ >mRNA_E-siliculosus-1a_F_contig1048.345.1 ID=mRNA_E-siliculosus-1a_F_contig1048.345.1|Name=mRNA_E-siliculosus-1a_F_contig1048.345.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2364bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1048:30185..34219+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGCTCTCGCGAGACCACACAACTGTCCCTCATCTCAACGAGGGCTAT
GGCCAACCGAGAGATGCGCACTTGCAAGGCGGAACGGGATCGCGCCTTTG
CTGAGCTTGTGTACGGCAGGTTGTTTACCCGCACAGGTGGGATCGTTCGC
ACCTGGACGGCTATCATCGCCAACATCAAGCGCCTCTTGTTCTTGATGCG
CTCTCGCGAGACCACACAACTGTCCCTCATCTCAACGAGGGCTATGGCCA
ACCGAGAGATGCGCACTTGCAAGGCGGAACGGGATCGCGCCTTTGCTGAG
CTTGTGTACGGCAGGTTGTTTACCCGCACAGGTGGGATCGTTCGCACCTG
GACGGCTATCATCGCCAACATCAAGCGCCTCTTGTTCTTGCAAGGAGCGG
TGGAGAGGGCCGCCCGTCAACATCTGTTGGAAGCGAACATGAACAAGGAG
CGGTGGAGAGGGCCGCCCGTCAACATCTGTTGGAAGCGAACATGAACCGC
ATGGCCATCGTAACAAGGTTCATGAGCCAGATGGCCCTCAAGCGTCGGCG
CAATAGAGCGGTTAAGATTCTCATCGGGGCTCTGAGCGCGTTTACCAACT
CGAACGCCATCGGTCGCTACGCGCAACGGGTCAAATGGGGTACTCGACAC
CTACAGGCCGTGGTGAGACGGCGCATGGCCTGCATGACGTCCCACCTCAC
ACTTCTCAATCGGCACTGGGACCGCCTGCACCCTCCTGTTCCCGTGCCGC
TGATGACAACGGCGATGCTGCTAAGACCGCCATCCAAAGCTTCACTGCCC
CCGTCACGACCTGGAACAGCAGAGACGACCCCGGCAACATCAACTTCGCC
GAGCAGCAACAAACGCCCGAATCGGCGAAAAGGCGCCGGGGGGCAAGGGG
GGCAAAAGAAAGGAAGAGCCCGTCCGAAGCGCCAGAAGAGCGTCGTCGGT
CGAGAAAAGAAGGTCGAAAATGATACTGGTGGCGGTGGTGGCCAGGGTTC
CGCAGGTGCAACACTTGCGTCGACGGTGCCAGAGACGGCTGAAAGCAATA
GTGCTCCCCCCGAGAACGCGTCGCAACCCAGGAGGCCCCCTGTGTACGTC
TCAAGCGAGGCGAGGCACAGAGAAATATTTTCATGGCTACAGAGGACGAG
GGCCAAGCATTGCAGGGACGTGATCAACTACGAGCGTTTCACGCCGCATG
GCCATCGTAACAAGGTTCATGAGCCAGATGGCCCTCAAGCGTCGGCGCAA
TAGAGCGGTTAAGATTCTCATCGGGGCTCTGAGCGCGTTTACCAACTCGA
ACGCCATCGGTCGCTACGCGCAACGGGTCAAATGGGGTACTCGACACCTA
CAGGCCGTGGTGAGACGGCGCATGGCCTGCATGACGTCCCACCTCACACT
TCTCAATCGGCACTGGGACCGCCTGCACCCTCCTGTTCCCGTGCCGCTGA
TGACAACGGCGATGCTGCTAAGACCGCCATCCAAAGCTTCACTGCCCCCG
TCACGACCTGGAACAGCAGAGACGACCCCGGCAACATCAACTTCGCCGAG
CAGCAACAAACGCCCGAATCGGCGAAAAGGCGCCGGGGGGCAAGGGGGGC
AAAAGAAAGGAAGAGCCCGTCCGAAGCGCCAGAAGAGCGTCGTCGGTCGA
GAAAAGAAGGTCGAAAATGATACTGGTGGCGGTGGTGGCCAGGGTTCCGC
AGGTGCAACACTTGCGTCGACGGTGCCAGAGACGGCTGAAAGCAATAGTG
CTCCCCCCGAGAACGCGTCGCAACCCAGGAGGCCCCCTGTGTACGTCTCA
AGCGAGGCGAGGCACAGAGAAATATTTTCATGGCTACAGAGGACGAGGGC
CAAGCATTGCAGGGACGTGATCAACTACGAGCGTTTCACGATATTCCCAT
GTATGGTGGAGCTGCTGCTGCAACACGAGCGAAGGACGTACGGCACCCGC
CTACAAGCCGTCAAGCACGTCATCGCTCTCCGAAGCTTCGGGCGGCTCTC
TCGAGTCTGGACGGAAGGCGGGTACTTCTCCAAAATGTCGCACGTCTTGC
CCCCGCCGCCGCGTATGCCGAGGGTGTTCACGCCGGAGGAGGGCGACGAG
ATGTTCGACCGCGCGGCCGCCAGGTAATATTCCCATGTATGGTGGAGCTG
CTGCTGCAACACGAGCGAAGGACGTACGGCACCCGCCTACAAGCCGTCAA
GCACGTCATCGCTCTCCGAAGCTTCGGGCGGCTCTCTCGAGTCTGGACGG
AAGGCGGGTACTTCTCCAAAATGTCGCACGTCTTGCCCCCGCCGCCGCGT
ATGCCGAGGGTGTTCACGCCGGAGGAGGGCGACGAGATGTTCGACCGCGC
GGCCGCCAGGTAAA back to top
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