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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig80.16261.1 vs. uniprot
Match: D7FP77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP77_ECTSI) HSP 1 Score: 520 bits (1339), Expect = 4.660e-182 Identity = 318/347 (91.64%), Postives = 320/347 (92.22%), Query Frame = 1
Query: 1 MAGPAEASSRASPTSSFNSSQEFSASRVLSNGTCGVVSSVIWIIISAGLCFPWLLEQPSASKAGDSPKSVAWFVVLAIDLSIGAMSIFSLWFRRSTLSIMLLIWGAGGIVATFLMGSFAMLPAVATICCCAEELCVLGAADISPLDDSFCHTTLEFCMETKWSLWCYYGGILLAMTSIVLLVNSVALHHKTLLDCERRRNEAAKAIRAANRXXXXXXXXXXXXXXXXASYAGSLSGXXXXXXXXXXXXXXXXXXXXXXXLLNPAETSSSRGRGGAPAVAPSFESPTRGYPRKPVATAEVGGGRVTPPVEFAALDPTGDTDIEMSRLGSPTSAAMSQSGQDEGDGNFG 1041
MAGPAEASSRASPTSSFNSSQEFSASRVLSNGTCGVVSSVIWIIISAGLCFPWLLEQPSASKAGDSPKSVAWFVVLAIDL IGAMS+FSLWFRRSTLSIMLLIWGAGGIV TFLMGSFAMLPAVATICCCAEELCVLGAADISPLDDSFCHTTLE CMETKWSLWCYYGGILLAMTSIVLLVNSVALHHKTLLDCER XXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXLLNPAETSSSRGRGGAPA+APSFESPTRGYPRKPVATAEVGGGRVTPPVEFAALDPTG TDIEMSRLGSPTSAAMSQSGQDEGDGNFG
Sbjct: 1 MAGPAEASSRASPTSSFNSSQEFSASRVLSNGTCGVVSSVIWIIISAGLCFPWLLEQPSASKAGDSPKSVAWFVVLAIDLLIGAMSVFSLWFRRSTLSIMLLIWGAGGIVVTFLMGSFAMLPAVATICCCAEELCVLGAADISPLDDSFCHTTLELCMETKWSLWCYYGGILLAMTSIVLLVNSVALHHKTLLDCERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLNPAETSSSRGRGGAPAIAPSFESPTRGYPRKPVATAEVGGGRVTPPVEFAALDPTGGTDIEMSRLGSPTSAAMSQSGQDEGDGNFG 347
BLAST of mRNA_E-siliculosus-1a_M_contig80.16261.1 vs. uniprot
Match: A0A6H5JN85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN85_9PHAE) HSP 1 Score: 472 bits (1215), Expect = 1.520e-161 Identity = 317/462 (68.61%), Postives = 322/462 (69.70%), Query Frame = 1
Query: 1 MAGPAEASSRASPTSSFNSSQEFSASRVLSNGTCGVVSSVIWIIISAGLCFPWLLEQPSASKAGDSPKSVAWFVVLAIDLSIGAMSIFSLWFRRSTLSIMLLIWGAGGIVATFLMGSFAMLPAVATI----------------------CCCAEELCVLGAADISPLDDSFCHTTLEFCMETKWSLWCYYGGILLAMTSIVLLVNSVALHHK---------------------------------------------------------------------------------------------TLLDCERRRNEAAKAIRAANRXXXXXXXXXXXXXXXXASYAGSLSGXXXXXXXXXXXXXXXXXXXXXXXLLNPAETSSSRGRGGAPAVAPSFESPTRGYPRKPVATAEVGGGRVTPPVEFAALDPTGDTDIEMSRLGSPTSAAMSQSGQDEGDGNFG 1041
MAGPAEASSRAS TSSFNSSQEFSASRVLSNG CGVVSSVIWIIISAGLCFPWLLEQP ASKAGDSPKSVAWFVVLAIDLSIGAMS+FSLWFRRSTLSIMLLIWGAGGIVATFL+GSFAMLPAVAT+ CCCAEELCVLGAADISPLDDSFC+TTLE CMETKWSLWCYYGGILLAMTSIVLLVNSVALHHK TLLDCERR NEAAKAIRAANR XXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX LLNPAET+SSRGRGGAPAVAPSFESP RGYPRKPVATAEV G RVTPPVEFAAL P DTDIEMSRLGSPTSAAMSQSGQDEGDGNFG
Sbjct: 1 MAGPAEASSRASSTSSFNSSQEFSASRVLSNGACGVVSSVIWIIISAGLCFPWLLEQPPASKAGDSPKSVAWFVVLAIDLSIGAMSVFSLWFRRSTLSIMLLIWGAGGIVATFLVGSFAMLPAVATMSTSSFTMSTSCATANPVDLGGRCCCAEELCVLGAADISPLDDSFCYTTLELCMETKWSLWCYYGGILLAMTSIVLLVNSVALHHKVLGRKEIVHLVQTQHDLLSKTQKNVPQQIIMRSSLTDVVGSGVVENLVGMEEVEEVDVADTVKTKQGRVRSEPHKARTHRTQDTLQSNRPIEETLLDCERRWNEAAKAIRAANRSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLLLNPAETASSRGRGGAPAVAPSFESPARGYPRKPVATAEVCGDRVTPPVEFAALYPARDTDIEMSRLGSPTSAAMSQSGQDEGDGNFG 462
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 0 |
| Cds size | 1092 |
| Model size | 1092 |
| Exons | 3 |
| Ec32 ortholog | Ec-08_000540.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | signal anchor |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936215.7342386-CDS-E-siliculosus-1a_M_contig80:413850..414230 | 1622936215.7342386-CDS-E-siliculosus-1a_M_contig80:413850..414230 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 413851..414230 + |
| 1696250980.5277793-CDS-E-siliculosus-1a_M_contig80:413850..414230 | 1696250980.5277793-CDS-E-siliculosus-1a_M_contig80:413850..414230 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 413851..414230 + |
| 1622936215.753097-CDS-E-siliculosus-1a_M_contig80:414650..414840 | 1622936215.753097-CDS-E-siliculosus-1a_M_contig80:414650..414840 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 414651..414840 + |
| 1696250980.535621-CDS-E-siliculosus-1a_M_contig80:414650..414840 | 1696250980.535621-CDS-E-siliculosus-1a_M_contig80:414650..414840 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 414651..414840 + |
| 1622936215.7818396-CDS-E-siliculosus-1a_M_contig80:417009..417531 | 1622936215.7818396-CDS-E-siliculosus-1a_M_contig80:417009..417531 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 417010..417531 + |
| 1696250980.5435042-CDS-E-siliculosus-1a_M_contig80:417009..417531 | 1696250980.5435042-CDS-E-siliculosus-1a_M_contig80:417009..417531 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 417010..417531 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig80.16261.1 >prot_E-siliculosus-1a_M_contig80.16261.1 ID=prot_E-siliculosus-1a_M_contig80.16261.1|Name=mRNA_E-siliculosus-1a_M_contig80.16261.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=364bp
MAGPAEASSRASPTSSFNSSQEFSASRVLSNGTCGVVSSVIWIIISAGLC FPWLLEQPSASKAGDSPKSVAWFVVLAIDLSIGAMSIFSLWFRRSTLSIM LLIWGAGGIVATFLMGSFAMLPAVATICCCAEELCVLGAADISPLDDSFC HTTLEFCMETKWSLWCYYGGILLAMTSIVLLVNSVALHHKTLLDCERRRN EAAKAIRAANRSRRRRQQLWEQEVYGGASYAGSLSGARPPSTRRTGGADD NSHAGGSTLLLNPAETSSSRGRGGAPAVAPSFESPTRGYPRKPVATAEVG GGRVTPPVEFAALDPTGDTDIEMSRLGSPTSAAMSQSGQDEGDGNFGGGG GGGGGGGGGGFTIG back to topmRNA from alignment at E-siliculosus-1a_M_contig80:413851..417531+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig80.16261.1 ID=mRNA_E-siliculosus-1a_M_contig80.16261.1|Name=mRNA_E-siliculosus-1a_M_contig80.16261.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3681bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:413851..417531+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGGCTGGACCTGCCGAGGCATCGTCTAGGGCGAGCCCCACAAGCAGCTT
CAATTCGAGCCAAGAGTTCTCCGCGTCGAGGGTGCTCTCGAACGGAACTT
GTGGCGTTGTCTCATCGGTGATATGGATCATCATCTCTGCTGGCCTGTGC
TTCCCGTGGTTGCTGGAGCAGCCCTCTGCATCCAAGGCTGGGGACTCCCC
CAAGTCAGTCGCGTGGTTCGTCGTATTGGCGATCGATCTTTCGATCGGGG
CCATGAGCATCTTTTCTCTGTGGTTTCGGCGAAGCACTCTGAGCATCATG
CTGCTTATTTGGGGCGCTGGCGGCATCGTGGCCACTTTCTTGATGGGAAG
TTTCGCGATGCTACCGGCAGTTGCCACAATGTGAGCAGAGAATGCAAAAC
CAACGTTTGTACAAATTAATTAGCTGAGTGGGTACCTATATATGTCAATG
TCATTTATACGGTGCTGCTGTTTCCGAATATGGTGTTGTTATCTTTATTG
TACACCACAGAGATCGGGCGTGCTGGTTCCGCACATACGAACTTCCGTTG
GCAACGAGGATTGTTTTGTTGTGGTGAACTCACGAGAGTCCTGGGTGATC
ATGTAGAAGAAAAGCTCTTTGCTCCGTACGATGTCCTCTGTACACCGTTT
ATAACAGGTCGAGTGACAGCTGGAATCTTGTTCAGCTAGTCCAAGTAGCC
TACATGGTATGGTCTGTGCACCTGTTGCGGGGGTGGTAGTAAGCTCTATT
ACAATGTCCACATCTTGCGCCACTGCCAACCCTGTGGACTTGGCCGGCAG
ATGCTGCTGTGCGGAAGAATTGTGCGTCTTGGGCGCCGCCGACATCTCTC
CGCTGGACGATAGCTTCTGTCATACGACCCTAGAGTTCTGCATGGAAACG
AAGTGGTCCCTGTGGTGCTACTACGGGGGCATCCTCCTGGCTATGACCTC
CATCGTATTGCTTGTCAACTCGGTCGCCCTACATCACAAGGTACGCTCGT
CAACATCGTAATACCCGACGAGTTCGAACTTCAAAAGCGTACGGTACCAT
CGCGATTCTTCAGCCACTCTGTATTGAGAGAGGAAATCTCGCACTACATT
GCACACACTAGAGATGTTTGTTGTCTTGCACCTTTGCCACCGTGTCAACT
GCACAGTAGTGACTATTCTCTCCCCTTCCTTGGATAAGCTGCCGACAGAC
ACCCTGGTCTCCCTTCAGCGTACCTACCTGCTGTCAGCAGCACATTCCAG
ACGATTTACCTTGTCCTCGTAGACGGACACACCACACCGCCTCGGTTCGC
TTCTCGATGTGGTAGCGTCGAGGTGCTCGATGTGGTGGTGTGTTGTTGCA
ACGCAGTCTGCTAACGTCGATCTCGTACACAGTCGAATGGCTTGATATTG
TGATGTTCATGAAATTGTCGGTTGCCCTCTGCCCTCGAGGGCAAGGAAGA
GGAAAGCAAGGCAAGATAATCGGACCGCCTTCGTTCGAAATGAAATTTGT
GAGGAAATAGAACAGGGAAGGGGATACGCAGACCCTATTCCCTAACCCTA
ACCCAACTTCCCCGATTGCATGCTTTGTCCAACGTGTTTACTTCATAGAA
AAACCCTGCCAAGGCTACTGAGGCAGAGAGCGGAGTGAGCCTCACACGGC
TCACACACACACAACCCAGAACACGATCTGTAGTCGAATCAGAATCGGGC
AGGTCCATCACCAAACCAGTACTCTCAGTTGCCGGCGCGGACGGACACTT
CCACTTCCATCGCACCTCTTGCGCAGCTCCACGGTGCAATGTCGATCGAA
ACAACCTCGGCCATGGTAGCTCCAGCAAATCGGTCCCTTAGCCCACTGAT
CATCATCCCCGGCTGCTTCCTTCTCCCTGTCGGAATCCTCGGACGTTTCG
TTTTTACTGTCTCTTCCGCGTCCACCTCCACGATCCCGCCAATTTTCCAC
GACCCCGGGCCCGACCACGTCCGTCCACGACGAGCGCATTATGATCTGCT
GGGAAGCTCTTCTTGCTCTTGCTGAGAAGGTCATGCCCCACCTGTACCAG
GCTAATGATCTCATGGCGATCCAAAATCTGTTTGCTGTTCCAACTCTGCA
TTATTTCTGATTCTACTTTCGAGTTCAATTAGAGTTGAATCGGAAACAAT
TCGAGAGTTGAATCGGAAACAGGTGTTGGATCGCAACGAGATCGTCAATC
TGGTACAGACGCAGATTGACCTCCTCAGCGAGAAAAAAAGAAGAGTGTTC
CCCAGCAGATCAGCATGCGCTCGTCGCGGACGGACATGGCCGGGCCGGGG
GTCGTAGACAATCTGGTGGACAAGGAGGAGGTCGAGGAGGTGGACGTGGC
AGACACGGTAGCAACAAAGCAAGACAGAGAGAGGAGCGAGCCTCACACGG
CTCACACACACAGAACCCAGAACACGGTCTGCAGTCGAATAGTCCAATAG
AGGCAGTAAGCTCCCAACCGACACGAAGCCGTCACTTTTGAGAGAACACA
CCGACAGAGTGTCATGGCGCGGCGGAAGCAAGAACATCGCCGTGCATCCA
ATCACAGAACATCAAGTTGCAGTATCGTCGACGTGGACATGCCATGAGCA
CGGAATAATCTGTTCGCCGCAGTTCCGGTACCATACGGCTGCCACATCTT
GCTGCCGTAGACACCTGAAATATCTGCAAGAATTGCATATTTATAGGGCA
TCATCAATTGTATTTCCGAGTGTCAGATGGCGTTCCCGTGGCCATACAAT
AGGCTTCCGGGGATACATTCCCTTGAGGATAGTATGGAACACAGGCACGG
CACCGTCCAGGGTTGCGGGTACTGGTGAGAGGAAAATAGTTGGGTGGCAT
CGACCACGTCCGAGTGTCATCAAGTGGACCCGACAACCAAAAGAGGGCCG
ACCGCGGTGGTGACTGTCACCCGCTCGGCAAAAAGTTGCGATCCTCCACG
AGCCCCGCGCTAACCCCGTTCCAAGCGATTCCCGCGCCAGACCCGCACAA
AGCGGATCGATGAAAGGTCTTTCGACCACGGGATCCTTCCGCCATTTTCC
CCACCCCTTACAACACCTAAGTTTTGTGATACCACGATAACTCGACTAAA
CGCCACTCACTCTCCCCACCGGGGGCATTTTTGGTGGTGACCGCATGAAA
CGAACGCAGACCCTCTTGGACTGCGAACGCCGGCGTAACGAGGCCGCCAA
AGCCATCCGCGCCGCCAACCGCTCCCGGCGCCGCCGCCAGCAGCTCTGGG
AGCAAGAGGTCTACGGAGGCGCCAGCTACGCGGGCAGCCTCTCCGGCGCA
CGGCCGCCCAGCACCCGAAGGACCGGCGGCGCCGACGACAACAGCCACGC
CGGTGGCTCGACGCTGCTGCTAAATCCCGCCGAGACGTCGAGCTCCCGCG
GCCGCGGTGGCGCCCCCGCCGTAGCGCCGTCGTTCGAATCCCCGACTCGT
GGTTACCCCCGAAAGCCGGTCGCCACGGCCGAGGTCGGCGGCGGCAGGGT
CACGCCACCGGTGGAGTTTGCCGCGCTGGACCCGACGGGAGACACGGACA
TTGAGATGAGCAGGCTGGGCTCCCCGACTTCGGCCGCGATGTCCCAGAGC
GGCCAAGATGAAGGCGACGGTAACTTTGGCGGCGGCGGCGGGGGTGGCGG
GGGTGGCGGGGGCGGCGGGTTTACGATCGGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig80:413851..417531+ >mRNA_E-siliculosus-1a_M_contig80.16261.1 ID=mRNA_E-siliculosus-1a_M_contig80.16261.1|Name=mRNA_E-siliculosus-1a_M_contig80.16261.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2184bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:413851..417531+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGGCTGGACCTGCCGAGGCATCGTCTAGGGCGAGCCCCACAAGCAGCTT CAATTCGAGCCAAGAGTTCTCCGCGTCGAGGGTGCTCTCGAACGGAACTT GTGGCGTTGTCTCATCGGTGATATGGATCATCATCTCTGCTGGCCTGTGC TTCCCGTGGTTGCTGGAGCAGCCCTCTGCATCCAAGGCTGGGGACTCCCC CAAGTCAGTCGCGTGGTTCGTCGTATTGGCGATCGATCTTTCGATCGGGG CCATGAGCATCTTTTCTCTGTGGTTTCGGCGAAGCACTCTGAGCATCATG CTGCTTATTTGGGGCGCTGGCGGCATCGTGGCCACTTTCTTGATGGGAAG TTTCGCGATGCTACCGGCAGTTGCCACAATATGGCTGGACCTGCCGAGGC ATCGTCTAGGGCGAGCCCCACAAGCAGCTTCAATTCGAGCCAAGAGTTCT CCGCGTCGAGGGTGCTCTCGAACGGAACTTGTGGCGTTGTCTCATCGGTG ATATGGATCATCATCTCTGCTGGCCTGTGCTTCCCGTGGTTGCTGGAGCA GCCCTCTGCATCCAAGGCTGGGGACTCCCCCAAGTCAGTCGCGTGGTTCG TCGTATTGGCGATCGATCTTTCGATCGGGGCCATGAGCATCTTTTCTCTG TGGTTTCGGCGAAGCACTCTGAGCATCATGCTGCTTATTTGGGGCGCTGG CGGCATCGTGGCCACTTTCTTGATGGGAAGTTTCGCGATGCTACCGGCAG TTGCCACAATATGCTGCTGTGCGGAAGAATTGTGCGTCTTGGGCGCCGCC GACATCTCTCCGCTGGACGATAGCTTCTGTCATACGACCCTAGAGTTCTG CATGGAAACGAAGTGGTCCCTGTGGTGCTACTACGGGGGCATCCTCCTGG CTATGACCTCCATCGTATTGCTTGTCAACTCGGTCGCCCTACATCACAAG ATGCTGCTGTGCGGAAGAATTGTGCGTCTTGGGCGCCGCCGACATCTCTC CGCTGGACGATAGCTTCTGTCATACGACCCTAGAGTTCTGCATGGAAACG AAGTGGTCCCTGTGGTGCTACTACGGGGGCATCCTCCTGGCTATGACCTC CATCGTATTGCTTGTCAACTCGGTCGCCCTACATCACAAGACCCTCTTGG ACTGCGAACGCCGGCGTAACGAGGCCGCCAAAGCCATCCGCGCCGCCAAC CGCTCCCGGCGCCGCCGCCAGCAGCTCTGGGAGCAAGAGGTCTACGGAGG CGCCAGCTACGCGGGCAGCCTCTCCGGCGCACGGCCGCCCAGCACCCGAA GGACCGGCGGCGCCGACGACAACAGCCACGCCGGTGGCTCGACGCTGCTG CTAAATCCCGCCGAGACGTCGAGCTCCCGCGGCCGCGGTGGCGCCCCCGC CGTAGCGCCGTCGTTCGAATCCCCGACTCGTGGTTACCCCCGAAAGCCGG TCGCCACGGCCGAGGTCGGCGGCGGCAGGGTCACGCCACCGGTGGAGTTT GCCGCGCTGGACCCGACGGGAGACACGGACATTGAGATGAGCAGGCTGGG CTCCCCGACTTCGGCCGCGATGTCCCAGAGCGGCCAAGATGAAGGCGACG GTAACTTTGGCGGCGGCGGCGGGGGTGGCGGGGGTGGCGGGGGCGGCGGG TTTACGATCGGCACCCTCTTGGACTGCGAACGCCGGCGTAACGAGGCCGC CAAAGCCATCCGCGCCGCCAACCGCTCCCGGCGCCGCCGCCAGCAGCTCT GGGAGCAAGAGGTCTACGGAGGCGCCAGCTACGCGGGCAGCCTCTCCGGC GCACGGCCGCCCAGCACCCGAAGGACCGGCGGCGCCGACGACAACAGCCA CGCCGGTGGCTCGACGCTGCTGCTAAATCCCGCCGAGACGTCGAGCTCCC GCGGCCGCGGTGGCGCCCCCGCCGTAGCGCCGTCGTTCGAATCCCCGACT CGTGGTTACCCCCGAAAGCCGGTCGCCACGGCCGAGGTCGGCGGCGGCAG GGTCACGCCACCGGTGGAGTTTGCCGCGCTGGACCCGACGGGAGACACGG ACATTGAGATGAGCAGGCTGGGCTCCCCGACTTCGGCCGCGATGTCCCAG AGCGGCCAAGATGAAGGCGACGGTAACTTTGGCGGCGGCGGCGGGGGTGG CGGGGGTGGCGGGGGCGGCGGGTTTACGATCGGC back to top
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