mRNA_E-siliculosus-1a_F_contig1047.342.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1047.342.1
Unique NamemRNA_E-siliculosus-1a_F_contig1047.342.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Match: A0A6H5JNJ8_9PHAE (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNJ8_9PHAE)

HSP 1 Score: 786 bits (2031), Expect = 5.420e-287
Identity = 392/408 (96.08%), Postives = 396/408 (97.06%), Query Frame = 1 
Query:    1 MAADSTSS-KIWQELRKLRDDIPPPVDNNTDSNKGDQESSACYKDFAAFAACNEVRVAIGRSSALPRDQFLAIFTQLVAGPRLDELLDLFKLSRSPPHPALQYACLVALHGVAELSDRRKDLLTRPDVVKELCAVMASPRQRLVTPTSAGAGGVEIVNAAAGAITTITGLFTSNGPLEPPFAKLWVELGAVSALASCLENHAVFDRSNPVSSDLPLCFFLIATSLLAGAADSVSEEDKLRLGKAWLTLFLEATRWIADEAADLLADFYTRPNWLKNIVGRMPEKLRASAVAAARECEREGTGSGSSSWKGGKTDRLALALLCGNAYNWDAEGELVGRRCAGPRCDRVQKCGHGGGNPHPAASGDEGGDGAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS 1221
            M ADSTSS KIWQELRKLRDDIPPPVDNNT SNKGDQESS CYKDFAAFAACNEVRVAIGRSSALPRDQFLAIF QLVAGPRLDELL+LFK SRSPPHPALQYACLVALHGVAELSDRRKDLLTRPDVVKELCAVMASPRQRLVTPTSAGAGGVEIVNAAAGA+TTITGLFTSNGPLEPP+AKLWVELGAVSALASCLENHAVFDRSNPVS DLPLCFFLIATSLLAGAADSVSEEDKLRLGKAWLT+FLEATRWIADEAADLLADFYTRPNWLKNIV RMPEKLRASAVAAARECEREGTGSGSS WKGGK DRLALALLCGNAYNWDA GELVGRRCAGPRCDRVQKCGHGGGNPHPAAS DEGGDGAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS
Sbjct:    1 MTADSTSSSKIWQELRKLRDDIPPPVDNNTGSNKGDQESSTCYKDFAAFAACNEVRVAIGRSSALPRDQFLAIFRQLVAGPRLDELLELFKFSRSPPHPALQYACLVALHGVAELSDRRKDLLTRPDVVKELCAVMASPRQRLVTPTSAGAGGVEIVNAAAGAVTTITGLFTSNGPLEPPYAKLWVELGAVSALASCLENHAVFDRSNPVSGDLPLCFFLIATSLLAGAADSVSEEDKLRLGKAWLTVFLEATRWIADEAADLLADFYTRPNWLKNIVERMPEKLRASAVAAARECEREGTGSGSSPWKGGKADRLALALLCGNAYNWDAGGELVGRRCAGPRCDRVQKCGHGGGNPHPAASEDEGGDGAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS 408
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Match: D8LGK8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK8_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.270e-9
Identity = 60/207 (28.99%), Postives = 83/207 (40.10%), Query Frame = 1 
Query:  661 ATSLLAGAADSVSEEDKLRLGKAWLTLFLEATRWIADEAA------------------------DLLADFYTRPNWLKNIVGRMPEKLRASAVAAARECEREGTGSGSSSWKGGKTDRLALALLCGNAYNWDAEGELVGRRCAGPRCDRVQ-KCGHGGGNPHPAASGDEGGDGAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKAC 1206
            A +++    D  S   + RL +A+L L  E   W+A   A                        +LL +     + L       P +LRA AVAAAR+CE +GT      +  G   +LA  L  G           + RR AG    +++ K      N   A  G   G+ +    FK CS+C    YCS ECQKA WK H+  C
Sbjct:  279 AGAVVDAETDKASRAARQRLAEAFLRLLAERREWVARSLAMAANASPTDLSGGGATAAAPVTINNLLVNSLAHADLLGAFTRLTPVRLRAQAVAAARQCETDGT------FAPGFGAQLARLLGLGGQQE-------LNRRMAGHTVQKIKNKEAARAANIKCAMCGKRQGNASGGAKFKVCSRCQVAMYCSGECQKAHWKTHKMEC 472
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Match: A0A8K0WV57_9HYPO (Uncharacterized protein n=1 Tax=Stachybotrys elegans TaxID=80388 RepID=A0A8K0WV57_9HYPO)

HSP 1 Score: 55.8 bits (133), Expect = 2.060e-5
Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 1 
Query: 1114 VAFKRCSQCHAVGYCSRECQKAGWKKHRKAC 1206
            V+ KRC++CH   YCSRECQKA WK+HR+ C
Sbjct:   15 VSLKRCAKCHTTPYCSRECQKADWKQHRRTC 45
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Match: S8AH82_DACHA (MYND-type zinc finger protein samB n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8AH82_DACHA)

HSP 1 Score: 55.1 bits (131), Expect = 4.380e-5
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1 
Query: 1108 ASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS 1221
            AS   K C++C +V YCSR+CQKA WK H+K C  VN+
Sbjct:   15 ASEDLKHCARCKSVNYCSRDCQKANWKHHKKVCGKVNT 52
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Match: A0A319E0C8_ASPSB (MYND-type zinc finger protein samB n=1 Tax=Aspergillus sclerotiicarbonarius (strain CBS 121057 / IBT 28362) TaxID=1448318 RepID=A0A319E0C8_ASPSB)

HSP 1 Score: 55.1 bits (131), Expect = 5.910e-5
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1 
Query: 1102 GAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACS 1209
            G+ASV  KRC++C    YCSR+CQKA WKKH++ CS
Sbjct:   17 GSASVPLKRCAKCKTQWYCSRDCQKADWKKHKQICS 52
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Match: A0A0F9X4H5_TRIHA (MYND-type zinc finger protein samB n=4 Tax=Trichoderma TaxID=5543 RepID=A0A0F9X4H5_TRIHA)

HSP 1 Score: 54.7 bits (130), Expect = 6.980e-5
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query: 1114 VAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS 1221
            V+ KRC++CH   YCSR+CQKA WK H+K C+  +S
Sbjct:   15 VSLKRCAKCHTTPYCSRDCQKADWKAHKKICAKNHS 50
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Match: A0A0N0RZN0_9EURO (MYND-type zinc finger protein samB n=1 Tax=Penicillium nordicum TaxID=229535 RepID=A0A0N0RZN0_9EURO)

HSP 1 Score: 54.7 bits (130), Expect = 8.310e-5
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 1 
Query: 1117 AFKRCSQCHAVGYCSRECQKAGWKKHRKACSA 1212
            A + CS+CH   YCSR+CQKA WKKH+K C A
Sbjct:  218 ALRNCSRCHKAKYCSRDCQKADWKKHKKVCKA 249
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JNJ8_9PHAE5.420e-28796.08MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
D8LGK8_ECTSI2.270e-928.99MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A8K0WV57_9HYPO2.060e-564.52Uncharacterized protein n=1 Tax=Stachybotrys elega... [more]
S8AH82_DACHA4.380e-555.26MYND-type zinc finger protein samB n=1 Tax=Dactyle... [more]
A0A319E0C8_ASPSB5.910e-561.11MYND-type zinc finger protein samB n=1 Tax=Aspergi... [more]
A0A0F9X4H5_TRIHA6.980e-555.56MYND-type zinc finger protein samB n=4 Tax=Trichod... [more]
A0A0N0RZN0_9EURO8.310e-562.50MYND-type zinc finger protein samB n=1 Tax=Penicil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1047contigE-siliculosus-1a_F_contig1047:35758..37259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1224
Model size1224
Exons2
Ec32 orthologEc-02_005590.1
Ec32 ortholog descriptionZinc finger, MYND-type
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927549.2013142-CDS-E-siliculosus-1a_F_contig1047:35757..364601622927549.2013142-CDS-E-siliculosus-1a_F_contig1047:35757..36460Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 35758..36460 -
1696318580.3005135-CDS-E-siliculosus-1a_F_contig1047:35757..364601696318580.3005135-CDS-E-siliculosus-1a_F_contig1047:35757..36460Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 35758..36460 -
1622927549.2193644-CDS-E-siliculosus-1a_F_contig1047:36738..372591622927549.2193644-CDS-E-siliculosus-1a_F_contig1047:36738..37259Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 36739..37259 -
1696318580.3094423-CDS-E-siliculosus-1a_F_contig1047:36738..372591696318580.3094423-CDS-E-siliculosus-1a_F_contig1047:36738..37259Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 36739..37259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1047.342.1prot_E-siliculosus-1a_F_contig1047.342.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1047 35758..37259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1047.342.1

>prot_E-siliculosus-1a_F_contig1047.342.1 ID=prot_E-siliculosus-1a_F_contig1047.342.1|Name=mRNA_E-siliculosus-1a_F_contig1047.342.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=408bp
MAADSTSSKIWQELRKLRDDIPPPVDNNTDSNKGDQESSACYKDFAAFAA
CNEVRVAIGRSSALPRDQFLAIFTQLVAGPRLDELLDLFKLSRSPPHPAL
QYACLVALHGVAELSDRRKDLLTRPDVVKELCAVMASPRQRLVTPTSAGA
GGVEIVNAAAGAITTITGLFTSNGPLEPPFAKLWVELGAVSALASCLENH
AVFDRSNPVSSDLPLCFFLIATSLLAGAADSVSEEDKLRLGKAWLTLFLE
ATRWIADEAADLLADFYTRPNWLKNIVGRMPEKLRASAVAAARECEREGT
GSGSSSWKGGKTDRLALALLCGNAYNWDAEGELVGRRCAGPRCDRVQKCG
HGGGNPHPAASGDEGGDGAASVAFKRCSQCHAVGYCSRECQKAGWKKHRK
ACSAVNS*
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mRNA from alignment at E-siliculosus-1a_F_contig1047:35758..37259-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1047.342.1 ID=mRNA_E-siliculosus-1a_F_contig1047.342.1|Name=mRNA_E-siliculosus-1a_F_contig1047.342.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1502bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:35758..37259- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGCGGACTCCACCAGCAGCAAGATCTGGCAAGAGCTGCGCAAGCT
CAGAGACGACATCCCCCCGCCGGTTGACAACAATACCGACAGCAACAAAG
GAGACCAGGAGAGTTCTGCCTGCTACAAAGACTTCGCAGCGTTCGCGGCT
TGCAACGAGGTGCGGGTCGCAATCGGACGCTCCTCCGCACTCCCCCGAGA
CCAATTCCTCGCGATCTTCACGCAGCTCGTGGCCGGGCCCCGACTAGACG
AACTCCTCGACCTTTTCAAGCTCAGTCGGAGTCCTCCCCACCCGGCCCTG
CAGTACGCCTGCCTTGTCGCCCTACACGGCGTCGCCGAGCTCAGCGACAG
GCGCAAGGACCTGCTCACACGCCCCGACGTGGTCAAAGAGCTTTGCGCGG
TGATGGCGTCTCCTCGACAACGGTTGGTGACTCCGACGTCAGCGGGCGCA
GGCGGGGTGGAGATCGTCAACGCGGCGGCCGGTGCGATCACTACAATTAC
CGGACTCTTCACTTCTAACGGGTACGGGGTGTAGAAGTTTTCAGGTTCGC
TCGATGAACGCCATCGAAATCGGTATAATAATCAGCATCGAAATCTTTAA
ATAAGCTAAATCTTGCAAGAAGTCGTACGCAAAATTGATCAGAGACTGCT
GCTGTAGCATTGTAGCTCCCCAAGAATATTCATCGCCGAAACTCACTTAA
CCTGAAATCGCCTTTCGCGCCTACCTTCTCCAACCTTCACCTCGCAATTC
TATTCAATCACACGCCTCCACCGGTTCAAACTATCACCGCCTCAAACAGA
CCCCTGGAGCCCCCCTTCGCGAAGCTCTGGGTGGAACTAGGAGCCGTCTC
AGCTCTGGCCTCGTGCCTGGAGAACCACGCGGTGTTCGACCGCTCAAACC
CCGTTTCTAGCGACCTCCCATTGTGCTTCTTCCTGATCGCCACGTCGTTG
CTCGCGGGAGCGGCGGACTCCGTCTCCGAGGAGGACAAGCTCAGGCTTGG
GAAGGCCTGGCTCACGCTCTTTTTGGAGGCCACGAGGTGGATCGCTGACG
AGGCGGCGGACCTGCTCGCAGACTTTTACACCCGTCCCAACTGGTTGAAA
AATATCGTGGGACGTATGCCCGAAAAGCTGAGGGCGAGCGCCGTGGCGGC
TGCGCGGGAGTGCGAGCGGGAGGGCACCGGGAGCGGAAGTAGTTCCTGGA
AGGGTGGTAAGACCGACCGCCTTGCTCTGGCTCTGCTGTGCGGCAACGCG
TACAACTGGGACGCGGAGGGCGAGCTGGTGGGGAGAAGATGTGCGGGGCC
TCGGTGCGATCGGGTGCAAAAGTGCGGCCATGGTGGCGGCAACCCTCATC
CTGCTGCTAGTGGGGATGAGGGCGGAGATGGCGCCGCCAGTGTGGCATTC
AAGCGGTGTTCGCAGTGCCACGCCGTAGGTTACTGCTCCCGGGAATGCCA
GAAGGCGGGCTGGAAGAAACATCGGAAGGCTTGCTCGGCGGTGAACTCTT
GA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1047:35758..37259-

>mRNA_E-siliculosus-1a_F_contig1047.342.1 ID=mRNA_E-siliculosus-1a_F_contig1047.342.1|Name=mRNA_E-siliculosus-1a_F_contig1047.342.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2448bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:35758..37259- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGCGGACTCCACCAGCAGCAAGATCTGGCAAGAGCTGCGCAAGCT
CAGAGACGACATCCCCCCGCCGGTTGACAACAATACCGACAGCAACAAAG
GAGACCAGGAGAGTTCTGCCTGCTACAAAGACTTCGCAGCGTTCGCGGCT
TGCAACGAGGTGCGGGTCGCAATCGGACGCTCCTCCGCACTCCCCCGAGA
CCAATTCCTCGCGATCTTCACGCAGCTCGTGGCCGGGCCCCGACTAGACG
AACTCCTCGACCTTTTCAAGCTCAGTCGGAGTCCTCCCCACCCGGCCCTG
CAGTACGCCTGCCTTGTCGCCCTACACGGCGTCGCCGAGCTCAGCGACAG
GCGCAAGGACCTGCTCACACGCCCCGACGTGGTCAAAGAGCTTTGCGCGG
TGATGGCGTCTCCTCGACAACGGTTGGTGACTCCGACGTCAGCGGGCGCA
GGCGGGGTGGAGATCGTCAACGCGGCGGCCGGTGCGATCACTACAATTAC
CGGACTCTTCACTTCTAACGGATGGCGGCGGACTCCACCAGCAGCAAGAT
CTGGCAAGAGCTGCGCAAGCTCAGAGACGACATCCCCCCGCCGGTTGACA
ACAATACCGACAGCAACAAAGGAGACCAGGAGAGTTCTGCCTGCTACAAA
GACTTCGCAGCGTTCGCGGCTTGCAACGAGGTGCGGGTCGCAATCGGACG
CTCCTCCGCACTCCCCCGAGACCAATTCCTCGCGATCTTCACGCAGCTCG
TGGCCGGGCCCCGACTAGACGAACTCCTCGACCTTTTCAAGCTCAGTCGG
AGTCCTCCCCACCCGGCCCTGCAGTACGCCTGCCTTGTCGCCCTACACGG
CGTCGCCGAGCTCAGCGACAGGCGCAAGGACCTGCTCACACGCCCCGACG
TGGTCAAAGAGCTTTGCGCGGTGATGGCGTCTCCTCGACAACGGTTGGTG
ACTCCGACGTCAGCGGGCGCAGGCGGGGTGGAGATCGTCAACGCGGCGGC
CGGTGCGATCACTACAATTACCGGACTCTTCACTTCTAACGGACCCCTGG
AGCCCCCCTTCGCGAAGCTCTGGGTGGAACTAGGAGCCGTCTCAGCTCTG
GCCTCGTGCCTGGAGAACCACGCGGTGTTCGACCGCTCAAACCCCGTTTC
TAGCGACCTCCCATTGTGCTTCTTCCTGATCGCCACGTCGTTGCTCGCGG
GAGCGGCGGACTCCGTCTCCGAGGAGGACAAGCTCAGGCTTGGGAAGGCC
TGGCTCACGCTCTTTTTGGAGGCCACGAGGTGGATCGCTGACGAGGCGGC
GGACCTGCTCGCAGACTTTTACACCCGTCCCAACTGGTTGAAAAATATCG
TGGGACGTATGCCCGAAAAGCTGAGGGCGAGCGCCGTGGCGGCTGCGCGG
GAGTGCGAGCGGGAGGGCACCGGGAGCGGAAGTAGTTCCTGGAAGGGTGG
TAAGACCGACCGCCTTGCTCTGGCTCTGCTGTGCGGCAACGCGTACAACT
GGGACGCGGAGGGCGAGCTGGTGGGGAGAAGATGTGCGGGGCCTCGGTGC
GATCGGGTGCAAAAGTGCGGCCATGGTGGCGGCAACCCTCATCCTGCTGC
TAGTGGGGATGAGGGCGGAGATGGCGCCGCCAGTGTGGCATTCAAGCGGT
GTTCGCAGTGCCACGCCGTAGGTTACTGCTCCCGGGAATGCCAGAAGGCG
GGCTGGAAGAAACATCGGAAGGCTTGCTCGGCGGTGAACTCTTGAACCCC
TGGAGCCCCCCTTCGCGAAGCTCTGGGTGGAACTAGGAGCCGTCTCAGCT
CTGGCCTCGTGCCTGGAGAACCACGCGGTGTTCGACCGCTCAAACCCCGT
TTCTAGCGACCTCCCATTGTGCTTCTTCCTGATCGCCACGTCGTTGCTCG
CGGGAGCGGCGGACTCCGTCTCCGAGGAGGACAAGCTCAGGCTTGGGAAG
GCCTGGCTCACGCTCTTTTTGGAGGCCACGAGGTGGATCGCTGACGAGGC
GGCGGACCTGCTCGCAGACTTTTACACCCGTCCCAACTGGTTGAAAAATA
TCGTGGGACGTATGCCCGAAAAGCTGAGGGCGAGCGCCGTGGCGGCTGCG
CGGGAGTGCGAGCGGGAGGGCACCGGGAGCGGAAGTAGTTCCTGGAAGGG
TGGTAAGACCGACCGCCTTGCTCTGGCTCTGCTGTGCGGCAACGCGTACA
ACTGGGACGCGGAGGGCGAGCTGGTGGGGAGAAGATGTGCGGGGCCTCGG
TGCGATCGGGTGCAAAAGTGCGGCCATGGTGGCGGCAACCCTCATCCTGC
TGCTAGTGGGGATGAGGGCGGAGATGGCGCCGCCAGTGTGGCATTCAAGC
GGTGTTCGCAGTGCCACGCCGTAGGTTACTGCTCCCGGGAATGCCAGAAG
GCGGGCTGGAAGAAACATCGGAAGGCTTGCTCGGCGGTGAACTCTTGA
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