mRNA_E-siliculosus-1a_M_contig8.16122.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16122.1
Unique NamemRNA_E-siliculosus-1a_M_contig8.16122.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16122.1 vs. uniprot
Match: A0A6H5JJ15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ15_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 5.500e-5
Identity = 27/35 (77.14%), Postives = 28/35 (80.00%), Query Frame = 3 
Query:    3 SAIEEAAEAAPPA--AAANEGIPKTLNICRRNDTR 101
            SAIEEAAE  PPA  +AA EGIPK LNICRRND R
Sbjct:   65 SAIEEAAEGEPPAGSSAATEGIPKALNICRRNDAR 99
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJ15_9PHAE5.500e-577.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:1085868..1086515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size177
Model size177
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936151.3395722-CDS-E-siliculosus-1a_M_contig8:1085867..10859441622936151.3395722-CDS-E-siliculosus-1a_M_contig8:1085867..1085944Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1085868..1085944 -
1696250951.1876593-CDS-E-siliculosus-1a_M_contig8:1085867..10859441696250951.1876593-CDS-E-siliculosus-1a_M_contig8:1085867..1085944Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1085868..1085944 -
1622936151.3579009-CDS-E-siliculosus-1a_M_contig8:1086415..10865151622936151.3579009-CDS-E-siliculosus-1a_M_contig8:1086415..1086515Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1086416..1086515 -
1696250951.1984754-CDS-E-siliculosus-1a_M_contig8:1086415..10865151696250951.1984754-CDS-E-siliculosus-1a_M_contig8:1086415..1086515Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1086416..1086515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16122.1prot_E-siliculosus-1a_M_contig8.16122.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig8 1085868..1086515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig8.16122.1

>prot_E-siliculosus-1a_M_contig8.16122.1 ID=prot_E-siliculosus-1a_M_contig8.16122.1|Name=mRNA_E-siliculosus-1a_M_contig8.16122.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=59bp
PAPSKKLLRRRRQPPPPTKGSRKHSTSAGATTPGGCPRSGSWRGCASSRD
RSATSSKSA
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mRNA from alignment at E-siliculosus-1a_M_contig8:1085868..1086515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig8.16122.1 ID=mRNA_E-siliculosus-1a_M_contig8.16122.1|Name=mRNA_E-siliculosus-1a_M_contig8.16122.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=648bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1085868..1086515- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCAGCGCCATCGAAGAAGCTGCTGAGGCGGCGCCGCCAGCCGCCGCCGCC
AACGAAGGGATCCCGAAAACACTCAACATCTGCAGGCGCAACGACACCAG
GTGCGATATACTTTTATTTTTTATTTTTTATCCCTTTGACGTACATTTCA
GTCTCCCCTCGACATCACTGCTGGGACACATTCCGATGGGATCGATATCA
GTGCTGCTGACGTAGATCGTGTGAGCCTTCGAGCGAACGCTGTAAATTGA
AAATTGAAAATTGTTTTGCACCTAAACAGCATTTTGTATTTTGTATGTTG
TTCACCCACTTATTTTTACAATTTCTCCTTGTAGTTGAGTTATTGGTGCT
GTGCCACACTGTGCCACACACGCGGTTCGTTGCTATCGCTCTGATTGCTT
GGAAGCGTGGTGCCAGTGCGAGAGATACTTCAAGAATAATAAAATTCTGA
AAATTCTCGATGCTACTCCTGCTTTCCGTATCTACACCGTCCTGAAACAC
ACATTACACTCACCCCGCCCGCTGGCAACCCTTGCCGTTGTCGTTTCGCC
GACCACTCTATAATTTCGCAGGTGGCTGTCCACGGAGCGGTTCCTGGAGA
GGCTGTGCGTCCTCGAGGGACCGATCGGCGACTTCCTCAAAGAGCGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:1085868..1086515-

>mRNA_E-siliculosus-1a_M_contig8.16122.1 ID=mRNA_E-siliculosus-1a_M_contig8.16122.1|Name=mRNA_E-siliculosus-1a_M_contig8.16122.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=354bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1085868..1086515- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCAGCGCCATCGAAGAAGCTGCTGAGGCGGCGCCGCCAGCCGCCGCCGCC
AACGAAGGGATCCCGAAAACACTCAACATCTGCAGGCGCAACGACACCAG
CCAGCGCCATCGAAGAAGCTGCTGAGGCGGCGCCGCCAGCCGCCGCCGCC
AACGAAGGGATCCCGAAAACACTCAACATCTGCAGGCGCAACGACACCAG
GTGGCTGTCCACGGAGCGGTTCCTGGAGAGGCTGTGCGTCCTCGAGGGAC
CGATCGGCGACTTCCTCAAAGAGCGCCGTGGCTGTCCACGGAGCGGTTCC
TGGAGAGGCTGTGCGTCCTCGAGGGACCGATCGGCGACTTCCTCAAAGAG
CGCC
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