mRNA_E-siliculosus-1a_F_contig1047.341.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1047.341.1
Unique NamemRNA_E-siliculosus-1a_F_contig1047.341.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: D8LTH1_ECTSI (Shikimate Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH1_ECTSI)

HSP 1 Score: 440 bits (1131), Expect = 5.520e-156
Identity = 222/224 (99.11%), Postives = 222/224 (99.11%), Query Frame = 1
Query:    1 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672
            MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEE FRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 
Sbjct:    1 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEGFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWA 224          
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: A0A6H5JIK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIK7_9PHAE)

HSP 1 Score: 439 bits (1130), Expect = 9.790e-155
Identity = 222/224 (99.11%), Postives = 223/224 (99.55%), Query Frame = 1
Query:    1 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672
            MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDM+PKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVN ILEFIDSNPPKWQKWKEKANAAGIEWV
Sbjct:   71 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMKPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNAILEFIDSNPPKWQKWKEKANAAGIEWV 294          
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: A0A835ZK89_9STRA (Shikimate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK89_9STRA)

HSP 1 Score: 256 bits (653), Expect = 4.480e-83
Identity = 127/215 (59.07%), Postives = 164/215 (76.28%), Query Frame = 1
Query:   46 LRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQA------DVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672
            +RLQ AELGS+LRGTNV+FVGMMGTGK++VAR LAD MGRY F+DTD IIE+L+ A V +VF + GEE FR +E++VL+++HSYVK+ VATGGGIV E +NWGK+QTG+VVWLDM   DI +RLS + EEV+KR LL G D   KL+ + ++RK  Y QA      DV V + P+D VD +  + V+ + +FIDSNPPKWQ+WK+ A A+GI WV
Sbjct:   18 IRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 232          
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: A0A7R9UH62_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH62_9STRA)

HSP 1 Score: 210 bits (535), Expect = 6.360e-65
Identity = 109/205 (53.17%), Postives = 139/205 (67.80%), Query Frame = 1
Query:   16 GLSMEV-EPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKW 627
            GL  +V E   +  +   L SRL GT+++FVGMMGTGKST  R LA  +  Y FLDTDT+IE   G     +F K+GEE FR++ES V+DQ  +Y ++C+ATGGG V  N+NWGKMQTG+VVWL MEP++I ER S + EEV KRPLL G D   KL E+L+KRK +Y  ADV VQL P D V+++   V   I  F+D NPPK+
Sbjct:   38 GLRADVQEEKAVEDEFTRLASRLYGTSIYFVGMMGTGKSTTGRELAKKLPGYSFLDTDTVIEAYAGQDCSAIFEKEGEEGFRNIESMVMDQACAYRRLCIATGGGAVLRNQNWGKMQTGIVVWLQMEPEEIAERFSGNDEEVEKRPLLQGGDAVDKLREILDKRKEKYEVADVHVQLSPGDSVEEVVERVCGKIHRFMDENPPKF 242          
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: A0A6U3Q8M5_9STRA (Shikimate kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q8M5_9STRA)

HSP 1 Score: 210 bits (535), Expect = 2.280e-64
Identity = 108/220 (49.09%), Postives = 154/220 (70.00%), Query Frame = 1
Query:   16 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPED-GVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672
            G  M ++P      A  LG RL+G+N++FVGMMG+GKS V  A+A  MG Y FLDTDTIIE +  A++ E+FA++GE+ FR +ESQVLD VH++V+  V+TGGGIV +  NW K+Q+G+V+W+D+ P  I+ R+ KD ++   RPLL  D+P   LE+LLE+RKP+Y+QADV +++  E   ++D+   VV  +  FID NPP W+  K KA A G++WV
Sbjct:   85 GEGMTIDP------ARLLGPRLQGSNLYFVGMMGSGKSAVGDAVARRMGSYNFLDTDTIIESVTNATITEIFAQEGEDTFRDIESQVLDSVHAHVRCVVSTGGGIVKKLSNWAKLQSGVVIWIDVPPSVIYNRI-KDKDD---RPLLQNDNPLETLEKLLEERKPRYSQADVRIEVNDESMSIEDVASKVVQDLHNFIDENPPAWKIAKAKAQAEGLDWV 294          
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: A0A7S1Z366_TRICV (Shikimate kinase n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z366_TRICV)

HSP 1 Score: 204 bits (519), Expect = 1.290e-61
Identity = 104/219 (47.49%), Postives = 148/219 (67.58%), Query Frame = 1
Query:   16 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672
            G  M+++P      A  LG RL+G+N++F+GMMG+GKS V   +A  MG Y FLDTD+IIE+  G ++ E+F  +GEE FR VE Q+LD VH+YV+  V+TGGGIV   +NW K+QTG+VVWLD++P+ I +R+  D      RPLL  DDP  KL++LL +R+ +YAQAD+ +++  +   D +   V+  +  FID NPP W+K K KA A G++WV
Sbjct:  112 GEGMKIDP------ARLLGPRLQGSNLYFIGMMGSGKSAVGDIVARRMGTYNFLDTDSIIEKATGMTIPEIFEAEGEEGFRQVEGQILDSVHAYVRCVVSTGGGIVCRLQNWAKLQTGLVVWLDVDPEVIIKRIEGD----ENRPLLQTDDPLKKLKDLLGEREERYAQADLRIEVTEDMDEDAVANMVIKELHYFIDENPPAWKKAKAKAQADGLDWV 320          
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: A0A7R9ZGS2_9STRA (Shikimate kinase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGS2_9STRA)

HSP 1 Score: 202 bits (513), Expect = 4.890e-61
Identity = 103/219 (47.03%), Postives = 146/219 (66.67%), Query Frame = 1
Query:   16 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672
            G  M+++P      A  LG RL+G+N++FVGMMG+GKS V   +A  MG Y FLDTD IIE+    S+ E+F  +GEE FR  E+QVLD VH+YV+  ++TGGG+V    NW K+QTG+V+WLD++P+ I +R+  D      RPLL  DDP  KL++LLE+R+ +Y+QADV +++  +   + +   VV  +  FID NPP W+K K KA A G++WV
Sbjct:   87 GEGMKIDP------ARLLGPRLQGSNLYFVGMMGSGKSAVGDVVARRMGTYNFLDTDEIIEKATAMSIPEIFDAEGEEGFREAEAQVLDSVHAYVRCVISTGGGLVCRMGNWSKLQTGVVIWLDVDPELIIKRIEGD----TNRPLLQADDPLQKLKDLLEERREKYSQADVRIEVTEDMDENAVADLVVKELHNFIDENPPAWKKAKAKAQAEGLDWV 295          
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: K0RFC3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RFC3_THAOC)

HSP 1 Score: 200 bits (509), Expect = 1.190e-60
Identity = 97/202 (48.02%), Postives = 142/202 (70.30%), Query Frame = 1
Query:   67 LGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672
            L  RLRG N++ +GMMG+GKS V  ALA  MG Y FLDTD I+E  +G S+ E+F K+GE+AFR  E+QVLD VH++V+  + TGGG+V+ N+NW K+QTG+V++L  +P+ I++R+     E   RPLL  DDP   L++L E+R+ +Y QADVT++++    V+ +T   +  + +FID NPP W++ KEKA A G++WV
Sbjct:   81 LSPRLRGCNLYLIGMMGSGKSAVGDALARRMGTYNFLDTDVILERAVGMSIPEIFEKEGEDAFRDAEAQVLDSVHAHVRCVIGTGGGLVTRNQNWAKLQTGLVLYLKTDPETIYKRI-----EGTDRPLLQTDDPLATLKDLTEERRGKYEQADVTIEVEDGMDVEAVTDMCIRMLHDFIDDNPPAWKQAKEKAQADGLDWV 277          
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: K0SPY6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SPY6_THAOC)

HSP 1 Score: 200 bits (509), Expect = 1.340e-60
Identity = 97/202 (48.02%), Postives = 142/202 (70.30%), Query Frame = 1
Query:   67 LGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672
            L  RLRG N++ +GMMG+GKS V  ALA  MG Y FLDTD I+E  +G S+ E+F K+GE+AFR  E+QVLD VH++V+  + TGGG+V+ N+NW K+QTG+V++L  +P+ I++R+     E   RPLL  DDP   L++L E+R+ +Y QADVT++++    V+ +T   +  + +FID NPP W++ KEKA A G++WV
Sbjct:   85 LSPRLRGCNLYLIGMMGSGKSAVGDALARRMGTYNFLDTDVILERAVGMSIPEIFEKEGEDAFRDAEAQVLDSVHAHVRCVIGTGGGLVTRNQNWAKLQTGLVLYLKTDPETIYKRI-----EGTDRPLLQTDDPLATLKDLTEERRGKYEQADVTIEVEDGMDVEAVTDMCIRMLHDFIDDNPPAWKQAKEKAQADGLDWV 281          
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: A0A7S1XQA2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQA2_9STRA)

HSP 1 Score: 197 bits (500), Expect = 8.600e-60
Identity = 101/209 (48.33%), Postives = 137/209 (65.55%), Query Frame = 1
Query:   25 MEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKAN 651
            +E EP     +   L  RL+G +++ VGMMGTGKST  + LA  MG Y FLDTDT+IE   G     +F ++GEEAFR +E+ V+DQ  +Y ++CVATGGG+V   KNW KMQTG+VVWL+M+P DI ERLS   +EV KRPLLA  DP  KL E+L++R+ +YA AD+T+ +        +   V + +  FID NPP++ +  E AN
Sbjct:   35 LEQEPD----EYVRLAERLQGASLYLVGMMGTGKSTAGKELAKRMGGYSFLDTDTVIEAYAGRDCATIFEEEGEEAFRDIETMVMDQACAYKRLCVATGGGMVLRTKNWSKMQTGIVVWLNMDPADIAERLSASSDEVTKRPLLAEADPAAKLTEILDERRDRYAIADITLDMTKXXXXXXVVRMVCSRVHSFIDKNPPRFTESSEYAN 239          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTH1_ECTSI5.520e-15699.11Shikimate Kinase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5JIK7_9PHAE9.790e-15599.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZK89_9STRA4.480e-8359.07Shikimate kinase n=1 Tax=Tribonema minus TaxID=303... [more]
A0A7R9UH62_9STRA6.360e-6553.17Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U3Q8M5_9STRA2.280e-6449.09Shikimate kinase n=1 Tax=Ditylum brightwellii TaxI... [more]
A0A7S1Z366_TRICV1.290e-6147.49Shikimate kinase n=2 Tax=Trieres chinensis TaxID=1... [more]
A0A7R9ZGS2_9STRA4.890e-6147.03Shikimate kinase n=1 Tax=Pseudictyota dubia TaxID=... [more]
K0RFC3_THAOC1.190e-6048.02Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
K0SPY6_THAOC1.340e-6048.02Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1XQA2_9STRA8.600e-6048.33Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1047contigE-siliculosus-1a_F_contig1047:31919..35052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size675
Model size675
Exons5
Ec32 orthologEc-02_005600.1
Ec32 ortholog descriptionShikimate Kinase
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.E
EC2.7.1.71
EggNOG OGs2QTKR@2759,COG0703@1
EggNOG free text desc.shikimate metabolic process
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615
KEGG ModuleM00022
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ReactionR02412
KEGG koko:K00891
KEGG rclassRC00002,RC00078
Preferred nameSK2
Seed eggNOG ortholog2880.D8LTH1
Seed ortholog evalue1.7e-122
Seed ortholog score445.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1047.341.1prot_E-siliculosus-1a_F_contig1047.341.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1047 31919..35052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927549.0846758-CDS-E-siliculosus-1a_F_contig1047:31918..320021622927549.0846758-CDS-E-siliculosus-1a_F_contig1047:31918..32002Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 31919..32002 +
1696318580.2494779-CDS-E-siliculosus-1a_F_contig1047:31918..320021696318580.2494779-CDS-E-siliculosus-1a_F_contig1047:31918..32002Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 31919..32002 +
1622927549.1008816-CDS-E-siliculosus-1a_F_contig1047:32663..328641622927549.1008816-CDS-E-siliculosus-1a_F_contig1047:32663..32864Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 32664..32864 +
1696318580.2618036-CDS-E-siliculosus-1a_F_contig1047:32663..328641696318580.2618036-CDS-E-siliculosus-1a_F_contig1047:32663..32864Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 32664..32864 +
1622927549.1118999-CDS-E-siliculosus-1a_F_contig1047:33334..334421622927549.1118999-CDS-E-siliculosus-1a_F_contig1047:33334..33442Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 33335..33442 +
1696318580.271428-CDS-E-siliculosus-1a_F_contig1047:33334..334421696318580.271428-CDS-E-siliculosus-1a_F_contig1047:33334..33442Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 33335..33442 +
1622927549.126977-CDS-E-siliculosus-1a_F_contig1047:34007..341361622927549.126977-CDS-E-siliculosus-1a_F_contig1047:34007..34136Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 34008..34136 +
1696318580.2804396-CDS-E-siliculosus-1a_F_contig1047:34007..341361696318580.2804396-CDS-E-siliculosus-1a_F_contig1047:34007..34136Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 34008..34136 +
1622927549.138222-CDS-E-siliculosus-1a_F_contig1047:34899..350521622927549.138222-CDS-E-siliculosus-1a_F_contig1047:34899..35052Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 34900..35052 +
1696318580.2904212-CDS-E-siliculosus-1a_F_contig1047:34899..350521696318580.2904212-CDS-E-siliculosus-1a_F_contig1047:34899..35052Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 34900..35052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1047.341.1

>prot_E-siliculosus-1a_F_contig1047.341.1 ID=prot_E-siliculosus-1a_F_contig1047.341.1|Name=mRNA_E-siliculosus-1a_F_contig1047.341.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=225bp
MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALA
DVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYV
KMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRP
LLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILE
FIDSNPPKWQKWKEKANAAGIEWV*
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mRNA from alignment at E-siliculosus-1a_F_contig1047:31919..35052+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1047.341.1 ID=mRNA_E-siliculosus-1a_F_contig1047.341.1|Name=mRNA_E-siliculosus-1a_F_contig1047.341.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3134bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:31919..35052+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGAGAAGTGCTGGGCTGAGCATGGAAGTGGAGCCTCATGTGCTGAG GCTACAGGCTGCGGAACTTGGGTCGAGGCTCCGGGTAAGACTTGAACATG ACAAAAGTATATATTTACGGCAAGAGACAGAGGAGATAGATGCTCTTCAC AGAAGGTGTCCACCAACGTCAGCGGAGCATGATGTAGCAGCAATTCGGCT GTTGGAGGACAATCGAAGCTGCTGCCAACATATTAAGTGTTGGTATTCGC CATGGCGATTTCATGACGGCGTTTGTGTGTTGTGCATCTTTTAGGGCGTT TCGACTTTGGCAACCAGACAACTCACGTATGGACTCTTTAATGTACAGTA CTTCTGCTGTACAGCAGACCGCAGTAGTTCCACGATAGGGCACACGCTTA TTTCAACACCAAGTTCAACAGTCTACAAAGGCAGTCTATTTTGCTGTTCT ACCCTTGCTTGACGAAACCGAGATACAGCAGTGTCTCTCTGTGGAGAAGA AGTTGGAGCACGCAGCATGAAAGGAGTTTGTCCCCTGGTTTCGTTTCGGC TACATACATACAACCTAGCATAGATTGGCAGTGTCTTGCAAAGGGGATGG TGTTCAAGCTTCTGCAACATCTCTTCGACCACTCTACCTCTTGTAGTGTT TGTTCCGGTCGTAGATACTCTGTGATCCTCCTTATGCAGGACTTCCAACA CCCCCTCGAGTCCCGCGTTCTTGCCCTTCAATTTTTTTTTGGCAGGGCAC GAACGTGTTTTTCGTGGGCATGATGGGCACGGGGAAGTCCACAGTCGCGC GCGCCCTGGCGGACGTGATGGGCAGGTACATCTTCTTGGACACCGACACC ATCATCGAGGAGCTCCTGGGGGCGAGCGTAGGCGAGGTGTTTGCCAAGGA TGGAGAGGAGGCCTTCCGGAGCGTGGAGAGCCAGGTCTTAGACCAGGTGA TACGGTGGTGGGGCTGGCGTGGGTTGAGGCGAGGCTGGTCGAGCTTGTTT GTTGCGTGCGCTGCTCGCGTGGTGTCAACTTTAACTTTCAGGTCGTGCAT GAGGCGGAGCGCAGTCCTGTGGCGCGCGAAAATCGTTGCTTGCTTTTTGC GACGGATAATCAGTGCGAAACAGCAACTGAAAGGAGAGCGAGTGGAACGA GCTCAACTTCCATGTGGCGTCGCATGCCGAGCGGTTGCTATCCCTTCCGA GGTGCTTGTGCGAGGGAAAACATAGGAGAGGGACAGCCCTTGGATATGTG TGCACCTGCGGGATTTTCTTCTGAGCGACTTGAGTGGGCGTGCTGGTATG CATGAGAACTGCGACCCATTCCCACCCTTTTCGTATGTAAGTGTTCCATC CCCAAACATGAAGCCGTGAAGTCTCTTGAATCTGTTTGGTACCGTCGTCG CTGGAATAATCGACAGGTGCACTCGTACGTCAAGATGTGCGTCGCCACGG GCGGGGGCATCGTGTCGGAGAACAAGAACTGGGGAAAGATGCAGACCGGC ATGGTGGTTTGGCTCGACATGGAGGTAAGAGTGAAAGAGAAGGGAGATGT ACGCCCGTATGTGCGTGTGGTTTAGTTTCAAAGATCCATGCGAATTTTCG CAGTGCATCTACTCCTAGGGTTGGATCGAAGACAACGTGCATCCGAGAAA GGGCGAAGTAATTCAACGTTGAAGGATACGAAAACCGTGAGCCTTGAGGG TTTTTGACTTGTGTGCTCTTGAAGACGCGAAAATTCTCCAGTACGCGGAA ATCCTGAGATTGTTCGTGTGAATCCAACGGGAAGCCATTAAACTACGGAC CCAGAACTTGTAGGCCTCTCCGAACGATCACACTCCAGTTGTTTCCATAG ACATGCTGTGAGTGCATTCTTTGCACCGCCGTCGTTTCTGGCGCTCACTA TGAACCATAGCAGTACCACTGTTGCCCTGCTTGGGTGAACCTCTTCTCTG ATGCCATTATTGAATGATCTTCCTCTCGAAATAAATACCGTAGTCAAGAG CCAAGTTCAGTTGTCTCAATGCTACATACCCTGTTGTAATTCAAACACTC CCCTACGATGCATTTGGACCGCCCTGCACGTTTCCCCAGCCCAAGGATAT ATTCGAACGGTTGTCGAAAGATCCGGAGGAAGTGGCCAAGAGGCCGCTCC TGGCGGGAGACGACCCTCAGGGAAAGCTCGAGGAGCTGCTGGAGAAAAGG AAGCCCCAGTATGCGCAGGTACGGGTTTGGCAGTCACGGAGAGGCGCAGT TACGTGCCACACGCCACGTGAATGTTGTAAGGCTTTGGTAAACAATTCAA TGGCAGTGTCACGAGAGGTAGCGGCAGAGATGGCATTGCCCTGTGGCGAG ACTGGTTGACGTGCATGGACGCTTCTGAGCGAACTGGCATACGATAGATG ACGTACCACCTGCATGATTGTAACTCTCGTTTTAGTCCCTGCACACGTGA GCGAGTTTTGTTCGACCCGTGGTCTCAATACGAGTTCCCTTTGTTAGGTT CATGGCATTTCCACCCATGCAGAGCGGAAATGTACGGATTGCAACCGTCT GCTATTAATGCCGAGAGATACATCACACCCCCACTAAGCTGGTTTACCGT GATCTCAGCATGTGCAGTTTTGTTTCTACACGGTATCATGTAGACATTTA GAGAGCAATGGGCATGCCCCTCTCCTACTGAAGCGGTCCATCGATATCGT AGTGTAGCGCATGCATGTTGTGGTGCTCCAAGGGTATGCGTGACGATTTC GTGGCTGCCGACTTCATCTGTCATCTTAAACCGGCAAGATATCGGGGAAA GACCCAGGCTGTTGACCTCGTACAACCATATCATCCAGCACAGCACCTGC CGCAAACACACGCCATCTGTGATCCGCAAAGTCTCAATTGAACCAACCAT TCTATGTGATGTAAATGCTCTTCGCCCCCCCCCCCACCGTATCCTGCTGT TTCACACGCTTGTCGCCCGTTTTGGCAACAGGCCGATGTGACCGTGCAGT TGAAACCAGAAGACGGCGTCGACGACATCACTTACAACGTCGTCAACACC ATCCTCGAGTTCATCGACAGCAACCCTCCCAAGTGGCAGAAGTGGAAGGA AAAGGCGAACGCGGCAGGAATCGAATGGGTTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1047:31919..35052+

>mRNA_E-siliculosus-1a_F_contig1047.341.1 ID=mRNA_E-siliculosus-1a_F_contig1047.341.1|Name=mRNA_E-siliculosus-1a_F_contig1047.341.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1350bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:31919..35052+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGAGAAGTGCTGGGCTGAGCATGGAAGTGGAGCCTCATGTGCTGAG
GCTACAGGCTGCGGAACTTGGGTCGAGGCTCCGGATGCGGAGAAGTGCTG
GGCTGAGCATGGAAGTGGAGCCTCATGTGCTGAGGCTACAGGCTGCGGAA
CTTGGGTCGAGGCTCCGGGGCACGAACGTGTTTTTCGTGGGCATGATGGG
CACGGGGAAGTCCACAGTCGCGCGCGCCCTGGCGGACGTGATGGGCAGGT
ACATCTTCTTGGACACCGACACCATCATCGAGGAGCTCCTGGGGGCGAGC
GTAGGCGAGGTGTTTGCCAAGGATGGAGAGGAGGCCTTCCGGAGCGTGGA
GAGCCAGGTCTTAGACCAGGGCACGAACGTGTTTTTCGTGGGCATGATGG
GCACGGGGAAGTCCACAGTCGCGCGCGCCCTGGCGGACGTGATGGGCAGG
TACATCTTCTTGGACACCGACACCATCATCGAGGAGCTCCTGGGGGCGAG
CGTAGGCGAGGTGTTTGCCAAGGATGGAGAGGAGGCCTTCCGGAGCGTGG
AGAGCCAGGTCTTAGACCAGGTGCACTCGTACGTCAAGATGTGCGTCGCC
ACGGGCGGGGGCATCGTGTCGGAGAACAAGAACTGGGGAAAGATGCAGAC
CGGCATGGTGGTTTGGCTCGACATGGAGGTGCACTCGTACGTCAAGATGT
GCGTCGCCACGGGCGGGGGCATCGTGTCGGAGAACAAGAACTGGGGAAAG
ATGCAGACCGGCATGGTGGTTTGGCTCGACATGGAGCCCAAGGATATATT
CGAACGGTTGTCGAAAGATCCGGAGGAAGTGGCCAAGAGGCCGCTCCTGG
CGGGAGACGACCCTCAGGGAAAGCTCGAGGAGCTGCTGGAGAAAAGGAAG
CCCCAGTATGCGCAGCCCAAGGATATATTCGAACGGTTGTCGAAAGATCC
GGAGGAAGTGGCCAAGAGGCCGCTCCTGGCGGGAGACGACCCTCAGGGAA
AGCTCGAGGAGCTGCTGGAGAAAAGGAAGCCCCAGTATGCGCAGGCCGAT
GTGACCGTGCAGTTGAAACCAGAAGACGGCGTCGACGACATCACTTACAA
CGTCGTCAACACCATCCTCGAGTTCATCGACAGCAACCCTCCCAAGTGGC
AGAAGTGGAAGGAAAAGGCGAACGCGGCAGGAATCGAATGGGTTTGAGCC
GATGTGACCGTGCAGTTGAAACCAGAAGACGGCGTCGACGACATCACTTA
CAACGTCGTCAACACCATCCTCGAGTTCATCGACAGCAACCCTCCCAAGT
GGCAGAAGTGGAAGGAAAAGGCGAACGCGGCAGGAATCGAATGGGTTTGA
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