mRNA_E-siliculosus-1a_M_contig79.15959.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig79.15959.1
Unique NamemRNA_E-siliculosus-1a_M_contig79.15959.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig79.15959.1 vs. uniprot
Match: D7FZ51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ51_ECTSI)

HSP 1 Score: 418 bits (1075), Expect = 1.200e-140
Identity = 303/446 (67.94%), Postives = 310/446 (69.51%), Query Frame = 1 
Query:   82 MHRHKLPDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKSGGGT-----------------------------------------DHFANFKQASRAARRTVPETAPEDPEEEMPLPSYRRPNAKTTATSGSSINTSSIGKAPLDEDEEPTTGQRRWRIHPRSTEPASSSRAGSRARDSVLLPSSSEXXXXXXFDESEANITGHERNNSRSPIPRPREQKNGGVADESPPYPLPPHSNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSESCGGLSNSEFDGSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRTNGRGTK-GKGRVVREGGRRRKGSSSHSRMGSHTSSSPIPGSAQGARARSAPSGSKKARKVVRAQGNEQGWIAKGGGSXXXXXXXGRARDPVLSFQGSQVSMRKNNERSLTQSKLNFPVVL 1293
            M RHKLPDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKS GG                                          DHFANF Q SRAARRTVPETAPEDPEEEM +PSYRRPNAKTTATSGSSINTSSIGKAPL EDEEPTTGQRRWRI PRSTEPASSSRAGSRARDSVLLPSSSEXXXXXXFDESEANITGHERNNSR                             XXXXX     XXXX                     GSESCGGLSNS+FDGSEG       XXXXXXXXXXXXXXXXXXXXXX           GKGRVVR           HSRMG++TSSSPIPGSAQGARARSAPSGSKKARKVVRAQGNE GWIAKGGGSXXXXXX GR R+PVLSFQGSQ+SMRKNNERSLTQSK+NFPVVL
Sbjct:    1 MRRHKLPDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKSVGGIVDTSRDKDGGRSRAKGTRNATVDMTAEGGDDTVTCSLQSGDDHFANFNQPSRAARRTVPETAPEDPEEEMRIPSYRRPNAKTTATSGSSINTSSIGKAPLYEDEEPTTGQRRWRIQPRSTEPASSSRAGSRARDSVLLPSSSEXXXXXXFDESEANITGHERNNSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSPGXXXXAFPYGDDSPSRQRREEEIESSGSESCGGLSNSDFDGSEGEGRKPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGRVVRXXXXXXXXXXXHSRMGNNTSSSPIPGSAQGARARSAPSGSKKARKVVRAQGNEHGWIAKGGGSXXXXXXGGRVRNPVLSFQGSQISMRKNNERSLTQSKINFPVVL 446
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig79.15959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ51_ECTSI1.200e-14067.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig79contigE-siliculosus-1a_M_contig79:115741..119162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1215
Model size1296
Exons3
Ec32 orthologEc-02_006300.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig79.15959.1prot_E-siliculosus-1a_M_contig79.15959.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig79 115741..119081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936133.5309255-CDS-E-siliculosus-1a_M_contig79:115740..1165491622936133.5309255-CDS-E-siliculosus-1a_M_contig79:115740..116549Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 115741..116549 -
1696250943.7361615-CDS-E-siliculosus-1a_M_contig79:115740..1165491696250943.7361615-CDS-E-siliculosus-1a_M_contig79:115740..116549Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 115741..116549 -
1622936133.6229637-CDS-E-siliculosus-1a_M_contig79:117333..1177211622936133.6229637-CDS-E-siliculosus-1a_M_contig79:117333..117721Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 117334..117721 -
1696250943.7470553-CDS-E-siliculosus-1a_M_contig79:117333..1177211696250943.7470553-CDS-E-siliculosus-1a_M_contig79:117333..117721Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 117334..117721 -
1622936133.638694-CDS-E-siliculosus-1a_M_contig79:119063..1190811622936133.638694-CDS-E-siliculosus-1a_M_contig79:119063..119081Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 119064..119081 -
1696250943.7662508-CDS-E-siliculosus-1a_M_contig79:119063..1190811696250943.7662508-CDS-E-siliculosus-1a_M_contig79:119063..119081Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 119064..119081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936133.6555934-UTR-E-siliculosus-1a_M_contig79:119081..1191621622936133.6555934-UTR-E-siliculosus-1a_M_contig79:119081..119162Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig79 119082..119162 -
1696250943.7799885-UTR-E-siliculosus-1a_M_contig79:119081..1191621696250943.7799885-UTR-E-siliculosus-1a_M_contig79:119081..119162Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig79 119082..119162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig79.15959.1

>prot_E-siliculosus-1a_M_contig79.15959.1 ID=prot_E-siliculosus-1a_M_contig79.15959.1|Name=mRNA_E-siliculosus-1a_M_contig79.15959.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=405bp
MHRHKLPDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKSGGGTDHFAN
FKQASRAARRTVPETAPEDPEEEMPLPSYRRPNAKTTATSGSSINTSSIG
KAPLDEDEEPTTGQRRWRIHPRSTEPASSSRAGSRARDSVLLPSSSEEEE
EEEFDESEANITGHERNNSRSPIPRPREQKNGGVADESPPYPLPPHSNKK
GKGSRCSPGSGAAAFPYGDDSPSRQRHEEEIESSGSESCGGLSNSEFDGS
EGEGRNPSSSSRRLSSSSLSRRREGGGEGEGTRRTNGRGTKGKGRVVREG
GRRRKGSSSHSRMGSHTSSSPIPGSAQGARARSAPSGSKKARKVVRAQGN
EQGWIAKGGGSGGGGSSGGRARDPVLSFQGSQVSMRKNNERSLTQSKLNF
PVVL*
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mRNA from alignment at E-siliculosus-1a_M_contig79:115741..119162-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig79.15959.1 ID=mRNA_E-siliculosus-1a_M_contig79.15959.1|Name=mRNA_E-siliculosus-1a_M_contig79.15959.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3422bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig79:115741..119162- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAAGGCACGAACGGGTACACCGAGCACCGGCCACCCAGACCATTCCGCCA
AACATCATCTCGTGTGTGACTTGCGGACACCATGCATCGACACAAGCTGG
TGAGTAGCACCAACCTTCCGTCTGTAGGTGGGCTTTGAACCGTTTCCGTT
GTTGATTGGTTGATCGAGATTTCAAGCTTTAGCTGGTGGGATGTTGACAG
CAGCACCAGTGTCTGAAGCTGCTGCTGCTGGTGCCGATGCGCTCGAACGC
AGAGTCATGGGATACATGAGCGTCATGACGCAGTTCAAACCCATGTATGC
CATTGTGTTGTAGGTTCCCGACGGTATGGCTTTTTGTCAAGACGAGATCT
CCTACCGTGATTTGTACACTTGTGTACTCTCTGCTGCTGCGTAGACGTTT
GGGTGGATTTTCAAATTTGAAATTGGTGCCACTTGTGTCAACGCAGGACC
ACGCCGACAGACTTGCAGCAGTAATTATGACTACAGCAGCATCGTTGAAA
ACGCCATGATCGACTCTACATGTAGATTACTCTACATTCCTCTATGGTAC
CTCTAGACATTGAGATCTCCGAAGCATGACCGCCGCTTCCATGCACTTTG
GCGTGATGCACGCCCAAAATCTATCATAGCGCGAGGTAGGACTCGGACTG
GATATTATTGCCGCTCCCTCGTGCGAATTTGCATAGTCTACCCGCCTTTT
GTTCCGGAAACGATATGTGCATTCCACACGATGATAACAAGTAAGTAGAT
GCAAGAAGTGTAGAGTATTTCCATGTCTGTTGGAGATGACCCGTCTTTCC
TATGGTTTGCTACTTAGCTCAACCGGCTGAGGGTTCTGCACAACAAATTG
CCTGTCGCATCCGAATCGTGTCTCTCAACAGCAGTATACTAGTAGAGTCA
AGATATTGCCCCCACTTCCACCAGTTTACGTCTTCCTCTTCCTCTTCCTC
CAACAATCCGGAATGCCCTCATTTCTTTGCCCGTGGAATCGGTGCACATC
TGCTGCATGCTACGCTTGTTGCGGCCGCTAAAGAGAGAGATGGTGTGTTT
ATCGCGACCTAAGACTAAGATTAGGATTCGAAGGAGGACCGCCTGCTCGC
CCTACCGGCAAAGCACAGGGGACTCCATGACATACTATGCAGGCAGGAGG
ACATGACGTGCCCCCCCCCGGTGACTCTCTACAAGTGCGGGAACATTTTT
ATTTGTTCTCCATCTCACGAGGATCGAACATGATGACGTCACTGCCGGTA
AATCCAACCGTCCGTTCCGTCCACGCTCCGCACGAAGACCCACTACTACT
ACAGTATTATGCTACACTTCCATGGAAGGTGTTACGGGCTTCCATGGAAC
CTTGTACAATGCGTTAAAAAGTGTAGGTACAGCTACACAGAGGTACAATA
GTCGGCCTCTCATCTGTTGCCGCCGTTCTCCTTGTCTCCAGCCCGACAAT
TGGCAAGAAGACACACGCTTCGACGGCCCAGAGCACTGGGGCATCGAAAA
ACGGTGGAAGAGCCTATTCCCCAAGACTGGCTTCAAGACCAAGAGCGGCG
GTGGTACCGATCATTTCGCCAACTTCAAGCAGGCAAGTCGTGCGGCTCGA
AGGACAGTTCCCGAGACGGCGCCAGAGGACCCCGAAGAGGAGATGCCGCT
TCCTTCTTACAGGAGACCGAACGCGAAAACAACGGCAACTAGCGGCAGCA
GCATCAACACAAGTAGTATCGGTAAGGCACCCTTAGACGAGGACGAGGAG
CCGACGACGGGGCAAAGAAGGTGGAGAATCCACCCGAGAAGCACGGAGCC
AGCGTCGAGCTCCCGTGCTGGAAGTAGGGGTGAGTCGAGAGACACGGGAA
AGGTACTACTGCTGTAGTTCCGCCCGGTGGTATTCATAGCTTAGTGTGGT
GATGCTTGCCATGCTTGTCATGCTTGTCTGGTATGAACGGTGGAGCGGGT
CAAACGTACCGTCCCACGTGATACGTGATGCCATGGTGATACTTACCAAT
AGCATGGGATTGTCTCAAACGGCTTACTCTTCGTACCCCCAGGGGCGGAG
GCAACTTTCGCGTTGGCGAAGGGGTGTCGATCAAGGCGAGTTGATGAACC
TCCTTCTTGTGGTAATACACAGCTGTGCACCCACGCACACACACACGAAT
AGAAAACTGTGACGTTTGCCCGACGAGCAGTGAACGGTAACGATCGGTCT
TGGTAAGGTTATTTGGTGGCGTTTTGGGTGGCGAGATTCCATGGCAAGCA
ATTCGCGGTACCACTCTACCGATCGAGGTGTTGGTGGAAGAAGTGGGATT
GCGCGTGTTACGCGGTTGATTGTGTGTGTCTGTTCTCGGACCCTGTTCTT
TCATCACTGTACTCTCTGCACTCTCGGTACGGGAATGTCGAAACGTGCGT
GCCCGGTGCGTCAACCAACCTTATCTTTTCCATGAAAGCTGCATGGCCAT
GTCTACCCACGACCCCCAAATTTCCGAGGTTGATCTTTTTACCCCGCTCG
CCTGCTTCCTCGCATGTGTCTCCCTATGAAACACAACCTCTCCCGCGTTT
TCTTAGTTTCTTCTCCTTGCCCCCGCGATATTTCCGCCGCATCCAAAACT
CGCCTGTGCGAAGCTCGTGATTCGGTGCTTCTGCCGTCTTCTTCCGAGGA
AGAGGAAGAGGAGGAGTTTGACGAAAGCGAGGCCAACATCACGGGCCACG
AACGGAACAACTCCCGTTCACCCATCCCCCGCCCCCGCGAACAGAAAAAC
GGCGGGGTCGCCGATGAATCGCCCCCATACCCCCTCCCCCCACACAGCAA
CAAGAAGGGGAAAGGCAGTAGGTGCTCTCCAGGGAGTGGGGCCGCAGCCT
TCCCGTATGGCGACGACTCCCCCTCGAGGCAACGACACGAAGAGGAGATC
GAGTCGTCTGGGTCGGAATCCTGCGGCGGCTTGTCGAACTCCGAATTTGA
CGGCAGCGAGGGCGAGGGTCGCAACCCATCCTCATCCTCCCGGCGGCTGT
CGTCTTCTTCTCTTTCTCGCCGTAGGGAAGGGGGCGGGGAAGGGGAAGGA
ACGCGGCGTACCAACGGGCGCGGGACAAAAGGGAAAGGGCGTGTCGTTCG
CGAGGGTGGTCGGAGGCGAAAGGGATCGTCCAGCCACAGCAGGATGGGCA
GCCACACGTCATCGAGCCCGATCCCGGGCTCCGCGCAAGGGGCGCGGGCT
CGCTCGGCACCATCTGGCAGCAAGAAGGCTCGCAAGGTTGTGAGAGCCCA
AGGGAACGAGCAAGGCTGGATAGCCAAGGGGGGTGGGAGCGGCGGTGGCG
GTAGCAGTGGAGGGCGAGCGAGGGATCCGGTGCTTTCGTTTCAGGGTTCT
CAGGTTTCGATGCGAAAGAACAACGAAAGAAGCCTGACGCAGTCCAAACT
CAACTTTCCCGTCGTATTGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig79:115741..119162-

>mRNA_E-siliculosus-1a_M_contig79.15959.1 ID=mRNA_E-siliculosus-1a_M_contig79.15959.1|Name=mRNA_E-siliculosus-1a_M_contig79.15959.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2430bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig79:115741..119162- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCATCGACACAAGCTGATGCATCGACACAAGCTGCCCGACAATTGGCA
AGAAGACACACGCTTCGACGGCCCAGAGCACTGGGGCATCGAAAAACGGT
GGAAGAGCCTATTCCCCAAGACTGGCTTCAAGACCAAGAGCGGCGGTGGT
ACCGATCATTTCGCCAACTTCAAGCAGGCAAGTCGTGCGGCTCGAAGGAC
AGTTCCCGAGACGGCGCCAGAGGACCCCGAAGAGGAGATGCCGCTTCCTT
CTTACAGGAGACCGAACGCGAAAACAACGGCAACTAGCGGCAGCAGCATC
AACACAAGTAGTATCGGTAAGGCACCCTTAGACGAGGACGAGGAGCCGAC
GACGGGGCAAAGAAGGTGGAGAATCCACCCGAGAAGCACGGAGCCAGCGT
CGAGCTCCCGTGCTGGAAGTAGGGCCCGACAATTGGCAAGAAGACACACG
CTTCGACGGCCCAGAGCACTGGGGCATCGAAAAACGGTGGAAGAGCCTAT
TCCCCAAGACTGGCTTCAAGACCAAGAGCGGCGGTGGTACCGATCATTTC
GCCAACTTCAAGCAGGCAAGTCGTGCGGCTCGAAGGACAGTTCCCGAGAC
GGCGCCAGAGGACCCCGAAGAGGAGATGCCGCTTCCTTCTTACAGGAGAC
CGAACGCGAAAACAACGGCAACTAGCGGCAGCAGCATCAACACAAGTAGT
ATCGGTAAGGCACCCTTAGACGAGGACGAGGAGCCGACGACGGGGCAAAG
AAGGTGGAGAATCCACCCGAGAAGCACGGAGCCAGCGTCGAGCTCCCGTG
CTGGAAGTAGGGCTCGTGATTCGGTGCTTCTGCCGTCTTCTTCCGAGGAA
GAGGAAGAGGAGGAGTTTGACGAAAGCGAGGCCAACATCACGGGCCACGA
ACGGAACAACTCCCGTTCACCCATCCCCCGCCCCCGCGAACAGAAAAACG
GCGGGGTCGCCGATGAATCGCCCCCATACCCCCTCCCCCCACACAGCAAC
AAGAAGGGGAAAGGCAGTAGGTGCTCTCCAGGGAGTGGGGCCGCAGCCTT
CCCGTATGGCGACGACTCCCCCTCGAGGCAACGACACGAAGAGGAGATCG
AGTCGTCTGGGTCGGAATCCTGCGGCGGCTTGTCGAACTCCGAATTTGAC
GGCAGCGAGGGCGAGGGTCGCAACCCATCCTCATCCTCCCGGCGGCTGTC
GTCTTCTTCTCTTTCTCGCCGTAGGGAAGGGGGCGGGGAAGGGGAAGGAA
CGCGGCGTACCAACGGGCGCGGGACAAAAGGGAAAGGGCGTGTCGTTCGC
GAGGGTGGTCGGAGGCGAAAGGGATCGTCCAGCCACAGCAGGATGGGCAG
CCACACGTCATCGAGCCCGATCCCGGGCTCCGCGCAAGGGGCGCGGGCTC
GCTCGGCACCATCTGGCAGCAAGAAGGCTCGCAAGGTTGTGAGAGCCCAA
GGGAACGAGCAAGGCTGGATAGCCAAGGGGGGTGGGAGCGGCGGTGGCGG
TAGCAGTGGAGGGCGAGCGAGGGATCCGGTGCTTTCGTTTCAGGGTTCTC
AGGTTTCGATGCGAAAGAACAACGAAAGAAGCCTGACGCAGTCCAAACTC
AACTTTCCCGTCGTATTGTAGCTCGTGATTCGGTGCTTCTGCCGTCTTCT
TCCGAGGAAGAGGAAGAGGAGGAGTTTGACGAAAGCGAGGCCAACATCAC
GGGCCACGAACGGAACAACTCCCGTTCACCCATCCCCCGCCCCCGCGAAC
AGAAAAACGGCGGGGTCGCCGATGAATCGCCCCCATACCCCCTCCCCCCA
CACAGCAACAAGAAGGGGAAAGGCAGTAGGTGCTCTCCAGGGAGTGGGGC
CGCAGCCTTCCCGTATGGCGACGACTCCCCCTCGAGGCAACGACACGAAG
AGGAGATCGAGTCGTCTGGGTCGGAATCCTGCGGCGGCTTGTCGAACTCC
GAATTTGACGGCAGCGAGGGCGAGGGTCGCAACCCATCCTCATCCTCCCG
GCGGCTGTCGTCTTCTTCTCTTTCTCGCCGTAGGGAAGGGGGCGGGGAAG
GGGAAGGAACGCGGCGTACCAACGGGCGCGGGACAAAAGGGAAAGGGCGT
GTCGTTCGCGAGGGTGGTCGGAGGCGAAAGGGATCGTCCAGCCACAGCAG
GATGGGCAGCCACACGTCATCGAGCCCGATCCCGGGCTCCGCGCAAGGGG
CGCGGGCTCGCTCGGCACCATCTGGCAGCAAGAAGGCTCGCAAGGTTGTG
AGAGCCCAAGGGAACGAGCAAGGCTGGATAGCCAAGGGGGGTGGGAGCGG
CGGTGGCGGTAGCAGTGGAGGGCGAGCGAGGGATCCGGTGCTTTCGTTTC
AGGGTTCTCAGGTTTCGATGCGAAAGAACAACGAAAGAAGCCTGACGCAG
TCCAAACTCAACTTTCCCGTCGTATTGTAG
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