mRNA_E-siliculosus-1a_F_contig1047.340.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: A0A6H5JL95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL95_9PHAE) HSP 1 Score: 530 bits (1365), Expect = 1.310e-183 Identity = 275/288 (95.49%), Postives = 278/288 (96.53%), Query Frame = 2 Query: 35 MPVASAVRKVAVVGHAQLLGARHRATTTSALPRRQCCGGSGTRSASTKAPAQPPPTGAPKPTKPTRASIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAGVDVTSSHK 898
MPVASAVRKVA+VGH QLLGARHRATTTSALPRRQCCGGSGTRSASTK PAQPPPTGAPKPTKPTRASIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEE SSAQ VD+HE EPFGDGGA SVASEIDWGRTLRFTFVGAA+VAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAP FLAVFLSTVMLLDGNAAKIDRKLRADY TTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPA VDVTSSHK
Sbjct: 1 MPVASAVRKVAIVGHTQLLGARHRATTTSALPRRQCCGGSGTRSASTKVPAQPPPTGAPKPTKPTRASIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEHSSAQHVDDHEQHEPFGDGGATSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPVFLAVFLSTVMLLDGNAAKIDRKLRADYPTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAAVDVTSSHK 288
BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: D8LTH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH2_ECTSI) HSP 1 Score: 412 bits (1059), Expect = 1.860e-138 Identity = 210/217 (96.77%), Postives = 214/217 (98.62%), Query Frame = 2 Query: 248 MYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAGVDVTSSHK 898
MYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEE+SSAQDVDE EH EPFGDGGARSVASEIDWGRTLRFTFVGAA+VAPALHAWYGFLI+RLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTT+VSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAGV VTSSHK
Sbjct: 1 MYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEKSSAQDVDELEHHEPFGDGGARSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIQRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTLVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAGVGVTSSHK 217
BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: A0A6A3NKH9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NKH9_9STRA) HSP 1 Score: 174 bits (441), Expect = 9.840e-47 Identity = 96/204 (47.06%), Postives = 123/204 (60.29%), Query Frame = 2 Query: 236 SIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAV 847
+ + Y SLLE+ PL+TK T GAIA GD+ CQL+ ++E E +P +D R FTF+G L++P LH WYGFL RLPG + A V KR+ALDQL FAP FL VFLS+V+ L+GN +I KLRAD+ T +NWG W+PAQ++NFRFV QVL++N VG WN YLSY S+ V
Sbjct: 35 NAWDSYTSLLETHPLSTKIATGGAIAGLGDMGCQLV----------------LEEKEKHKPL-----------LDVKRAAIFTFLGGFLISPVLHVWYGFLGSRLPGVSAAAVAKRLALDQLGFAPTFLPVFLSSVLTLEGNKEQIPDKLRADWWTVTKANWGVWVPAQILNFRFVPGPMQVLFSNVVGLLWNAYLSYVSHADV 211
BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: A0A835YNC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC4_9STRA) HSP 1 Score: 175 bits (443), Expect = 3.630e-46 Identity = 101/209 (48.33%), Postives = 125/209 (59.81%), Query Frame = 2 Query: 236 SIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQL-----LALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAV 847
+I Y+ LLE+ P+ATKA+TS AIA GD+ CQ+ LA A E S+A D G+ S +DW R RF + AL APA HAWYG L R LPG KR+ALDQ +F+P F+ VF S +M+L+G AA+I KLR DY TT+VSNW W+PAQ+ NFR V YQV AN VG FWN YLS+QS K +
Sbjct: 46 NIIQSYSRLLETNPIATKALTSAAIAGMGDIGCQIYTNRGLAAAAAGAGEAGSNAGAAD------GAATWGSTSQQRHLDWTRCARFMLLSGALFAPAAHAWYGLLGRLLPGQTLMVATKRMALDQFVFSPVFVGVFFSALMVLEGEAARIPDKLRQDYWTTLVSNWTLWMPAQLANFRLVPLQYQVGAANCVGLFWNAYLSFQSFKKI 248
BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: W2Q4U2_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2Q4U2_PHYPN) HSP 1 Score: 171 bits (433), Expect = 1.570e-45 Identity = 99/214 (46.26%), Postives = 129/214 (60.28%), Query Frame = 2 Query: 239 IFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAGVD 880
++ Y SLLE+ PL+TK VT GAIA GDV CQL V E E DG A+ +D R FTF+G L++PALH WYGFL RLPG + A V KR+ALDQL FAP FL + LS+V++L+G++ I KLRAD+ + +NW W+PAQ++NFRFV QVL+AN +G WN YLSY S+ V K + + V+
Sbjct: 41 VWDAYASLLETHPLSTKIVTGGAIAGLGDVGCQL-----------------VLESE------DGDAK-----LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTAAVAKRLALDQLGFAPTFLPIILSSVLMLEGHSEDIPDKLRADWWSVTKANWVVWVPAQILNFRFVPGSMQVLFANVIGLLWNAYLSYVSHSEVPKTLLNEKDVE 226
BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: A0A835YKC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKC9_9STRA) HSP 1 Score: 174 bits (440), Expect = 2.650e-45 Identity = 107/237 (45.15%), Postives = 134/237 (56.54%), Query Frame = 2 Query: 236 SIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASE-------------------IDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPG-TAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAGVDVT 886
S+ Y++LL SRPL TK VT+ IA GDV+CQL A EE Q DV H P GG SV++ +D RT +F + AAL AP+ H WY L + + G TA VKR+ALDQ LFAP F+ +F S +M+++G AAKI +KL+ DY T+V NWG W+PAQ+INFR V YQVL+AN VGFFWN +S Q K L D E P V T
Sbjct: 23 SLLDRYSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGE-NDVPPHH---PHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFKETLDDEEQPVAVTET 255
BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: A0A225WCL6_9STRA (Protein Mpv17 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WCL6_9STRA) HSP 1 Score: 167 bits (424), Expect = 1.130e-44 Identity = 100/215 (46.51%), Postives = 125/215 (58.14%), Query Frame = 2 Query: 218 TKPTRAS-IFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDM 859
TKPT A ++ Y SLL + PL+TK T GAIA GDV CQLL LE KR D RT FT +G L++P LH WYGFL R+ G A + V+KR+ALDQL FAP FL VFLS+V+ L+G+A I KLR D+ + +NWG W+PAQ++NFRFV QVL++N VG WN YLSY S+ V K +
Sbjct: 6 TKPTTARRVWDSYASLLGTHPLSTKIATGGAIAGLGDVGCQLL-LEGDKR------------------------------FDGKRTAIFTILGGFLISPVLHVWYGFLGSRVSGVATSAVMKRLALDQLGFAPIFLPVFLSSVLTLEGHAYDIPDKLRVDWWSVTKANWGVWVPAQILNFRFVPGPMQVLFSNVVGLLWNAYLSYVSHSTVPKTL 189
BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: A0A4Q2YFM0_9BACT (Mpv17/PMP22 family protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q2YFM0_9BACT) HSP 1 Score: 167 bits (423), Expect = 3.330e-44 Identity = 92/203 (45.32%), Postives = 122/203 (60.10%), Query Frame = 2 Query: 221 KPTRASIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSY 829
+P +S++ YN LLE+ PL TK +T+GAIA DV+CQ+ S D D + +S+ +DW RT FT V L P H WYGFL ++ GT +KRV LDQ+LFAP LA F S V+L++G + +I KLR D TT+++N+ WIPAQ+INF+FV Y+VL+AN VGFFWNIYLSY
Sbjct: 25 RPDTSSLWQQYNKLLETHPLMTKCITAGAIAAVADVTCQV------------SFPSDEDAN-----------KSLLERMDWKRTRNFTIVNTFLFPPLAHYWYGFLSVKIVGTTFMAAIKRVVLDQMLFAPVLLASFFSAVLLVNGESDRIPDKLRNDLPTTILTNYTVWIPAQLINFQFVPIPYRVLWANAVGFFWNIYLSY 204
BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: D0MT87_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MT87_PHYIT) HSP 1 Score: 167 bits (422), Expect = 6.190e-44 Identity = 98/205 (47.80%), Postives = 124/205 (60.49%), Query Frame = 2 Query: 239 IFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLK 853
I+ Y SLLE+ PL TK VT GAIA GDV CQL V E E DG A+ +D RT+ FTF+G L++P LH WYGFL RLPG + + V KR+ALDQL FAP FL + LS+V+ L+G+A I KLRAD+ + +NW W+PAQ++NFRFV QV+++N VG WN YLSY S+ V K
Sbjct: 41 IWDTYASLLETHPLKTKIVTGGAIAGLGDVGCQL-----------------VLEGE------DGDAK-----LDVKRTVIFTFLGGLLISPVLHVWYGFLGSRLPGVSTSAVAKRLALDQLGFAPTFLPIILSSVLTLEGHAEDIPDKLRADWWPLMKANWVVWVPAQILNFRFVPGSMQVIFSNVVGLLWNSYLSYVSHSQVPK 217
BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: A0A329SFZ2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SFZ2_9STRA) HSP 1 Score: 166 bits (420), Expect = 9.110e-44 Identity = 99/205 (48.29%), Postives = 119/205 (58.05%), Query Frame = 2 Query: 239 IFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLK 853
+ Y SLLE+ PL TK VT GAIA GDV CQL+ LEV D AR D RT FTF+G L++P LH WYGFL RLPG + V KR+ALDQL FAP FL V LS+V+ L+G+A I KLRAD+ +NW W+PAQ++NFRFV QVL++N VG WN YLSY S+ V K
Sbjct: 34 FWDAYASLLETHPLRTKIVTGGAIAGLGDVGCQLV-LEVE----------------------DDDAR-----FDVKRTAIFTFLGGFLISPVLHVWYGFLGSRLPGVSTTAVAKRLALDQLGFAPTFLPVILSSVLALEGHAEDIPNKLRADWWPLTKANWVVWVPAQILNFRFVPGSMQVLFSNVVGLLWNAYLSYVSHSEVPK 210 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1047.340.1 >prot_E-siliculosus-1a_F_contig1047.340.1 ID=prot_E-siliculosus-1a_F_contig1047.340.1|Name=mRNA_E-siliculosus-1a_F_contig1047.340.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=289bp MPVASAVRKVAVVGHAQLLGARHRATTTSALPRRQCCGGSGTRSASTKAPback to top mRNA from alignment at E-siliculosus-1a_F_contig1047:24941..31504- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1047.340.1 ID=mRNA_E-siliculosus-1a_F_contig1047.340.1|Name=mRNA_E-siliculosus-1a_F_contig1047.340.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6564bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:24941..31504- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1047:24941..31504- >mRNA_E-siliculosus-1a_F_contig1047.340.1 ID=mRNA_E-siliculosus-1a_F_contig1047.340.1|Name=mRNA_E-siliculosus-1a_F_contig1047.340.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1734bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:24941..31504- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |