mRNA_E-siliculosus-1a_F_contig1047.340.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1047.340.1
Unique NamemRNA_E-siliculosus-1a_F_contig1047.340.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: A0A6H5JL95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL95_9PHAE)

HSP 1 Score: 530 bits (1365), Expect = 1.310e-183
Identity = 275/288 (95.49%), Postives = 278/288 (96.53%), Query Frame = 2 
Query:   35 MPVASAVRKVAVVGHAQLLGARHRATTTSALPRRQCCGGSGTRSASTKAPAQPPPTGAPKPTKPTRASIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAGVDVTSSHK 898
            MPVASAVRKVA+VGH QLLGARHRATTTSALPRRQCCGGSGTRSASTK PAQPPPTGAPKPTKPTRASIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEE SSAQ VD+HE  EPFGDGGA SVASEIDWGRTLRFTFVGAA+VAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAP FLAVFLSTVMLLDGNAAKIDRKLRADY TTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPA VDVTSSHK
Sbjct:    1 MPVASAVRKVAIVGHTQLLGARHRATTTSALPRRQCCGGSGTRSASTKVPAQPPPTGAPKPTKPTRASIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEHSSAQHVDDHEQHEPFGDGGATSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPVFLAVFLSTVMLLDGNAAKIDRKLRADYPTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAAVDVTSSHK 288
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: D8LTH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH2_ECTSI)

HSP 1 Score: 412 bits (1059), Expect = 1.860e-138
Identity = 210/217 (96.77%), Postives = 214/217 (98.62%), Query Frame = 2 
Query:  248 MYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAGVDVTSSHK 898
            MYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEE+SSAQDVDE EH EPFGDGGARSVASEIDWGRTLRFTFVGAA+VAPALHAWYGFLI+RLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTT+VSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAGV VTSSHK
Sbjct:    1 MYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEKSSAQDVDELEHHEPFGDGGARSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIQRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTLVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAGVGVTSSHK 217
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: A0A6A3NKH9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NKH9_9STRA)

HSP 1 Score: 174 bits (441), Expect = 9.840e-47
Identity = 96/204 (47.06%), Postives = 123/204 (60.29%), Query Frame = 2 
Query:  236 SIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAV 847
            + +  Y SLLE+ PL+TK  T GAIA  GD+ CQL+                ++E E  +P            +D  R   FTF+G  L++P LH WYGFL  RLPG + A V KR+ALDQL FAP FL VFLS+V+ L+GN  +I  KLRAD+ T   +NWG W+PAQ++NFRFV    QVL++N VG  WN YLSY S+  V
Sbjct:   35 NAWDSYTSLLETHPLSTKIATGGAIAGLGDMGCQLV----------------LEEKEKHKPL-----------LDVKRAAIFTFLGGFLISPVLHVWYGFLGSRLPGVSAAAVAKRLALDQLGFAPTFLPVFLSSVLTLEGNKEQIPDKLRADWWTVTKANWGVWVPAQILNFRFVPGPMQVLFSNVVGLLWNAYLSYVSHADV 211
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: A0A835YNC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC4_9STRA)

HSP 1 Score: 175 bits (443), Expect = 3.630e-46
Identity = 101/209 (48.33%), Postives = 125/209 (59.81%), Query Frame = 2 
Query:  236 SIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQL-----LALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAV 847
            +I   Y+ LLE+ P+ATKA+TS AIA  GD+ CQ+     LA   A   E  S+A   D           G+ S    +DW R  RF  +  AL APA HAWYG L R LPG       KR+ALDQ +F+P F+ VF S +M+L+G AA+I  KLR DY TT+VSNW  W+PAQ+ NFR V   YQV  AN VG FWN YLS+QS K +
Sbjct:   46 NIIQSYSRLLETNPIATKALTSAAIAGMGDIGCQIYTNRGLAAAAAGAGEAGSNAGAAD------GAATWGSTSQQRHLDWTRCARFMLLSGALFAPAAHAWYGLLGRLLPGQTLMVATKRMALDQFVFSPVFVGVFFSALMVLEGEAARIPDKLRQDYWTTLVSNWTLWMPAQLANFRLVPLQYQVGAANCVGLFWNAYLSFQSFKKI 248
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: W2Q4U2_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2Q4U2_PHYPN)

HSP 1 Score: 171 bits (433), Expect = 1.570e-45
Identity = 99/214 (46.26%), Postives = 129/214 (60.28%), Query Frame = 2 
Query:  239 IFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAGVD 880
            ++  Y SLLE+ PL+TK VT GAIA  GDV CQL                 V E E      DG A+     +D  R   FTF+G  L++PALH WYGFL  RLPG + A V KR+ALDQL FAP FL + LS+V++L+G++  I  KLRAD+ +   +NW  W+PAQ++NFRFV    QVL+AN +G  WN YLSY S+  V K + +   V+
Sbjct:   41 VWDAYASLLETHPLSTKIVTGGAIAGLGDVGCQL-----------------VLESE------DGDAK-----LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTAAVAKRLALDQLGFAPTFLPIILSSVLMLEGHSEDIPDKLRADWWSVTKANWVVWVPAQILNFRFVPGSMQVLFANVIGLLWNAYLSYVSHSEVPKTLLNEKDVE 226
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: A0A835YKC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKC9_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.650e-45
Identity = 107/237 (45.15%), Postives = 134/237 (56.54%), Query Frame = 2 
Query:  236 SIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASE-------------------IDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPG-TAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAGVDVT 886
            S+   Y++LL SRPL TK VT+  IA  GDV+CQL     A  EE Q    DV  H    P   GG  SV++                    +D  RT +F  + AAL AP+ H WY  L + + G TA    VKR+ALDQ LFAP F+ +F S +M+++G AAKI +KL+ DY  T+V NWG W+PAQ+INFR V   YQVL+AN VGFFWN  +S Q  K  L D E P  V  T
Sbjct:   23 SLLDRYSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGE-NDVPPHH---PHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFKETLDDEEQPVAVTET 255
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: A0A225WCL6_9STRA (Protein Mpv17 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WCL6_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.130e-44
Identity = 100/215 (46.51%), Postives = 125/215 (58.14%), Query Frame = 2 
Query:  218 TKPTRAS-IFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDM 859
            TKPT A  ++  Y SLL + PL+TK  T GAIA  GDV CQLL LE  KR                               D  RT  FT +G  L++P LH WYGFL  R+ G A + V+KR+ALDQL FAP FL VFLS+V+ L+G+A  I  KLR D+ +   +NWG W+PAQ++NFRFV    QVL++N VG  WN YLSY S+  V K +
Sbjct:    6 TKPTTARRVWDSYASLLGTHPLSTKIATGGAIAGLGDVGCQLL-LEGDKR------------------------------FDGKRTAIFTILGGFLISPVLHVWYGFLGSRVSGVATSAVMKRLALDQLGFAPIFLPVFLSSVLTLEGHAYDIPDKLRVDWWSVTKANWGVWVPAQILNFRFVPGPMQVLFSNVVGLLWNAYLSYVSHSTVPKTL 189
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: A0A4Q2YFM0_9BACT (Mpv17/PMP22 family protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q2YFM0_9BACT)

HSP 1 Score: 167 bits (423), Expect = 3.330e-44
Identity = 92/203 (45.32%), Postives = 122/203 (60.10%), Query Frame = 2 
Query:  221 KPTRASIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSY 829
            +P  +S++  YN LLE+ PL TK +T+GAIA   DV+CQ+            S   D D +           +S+   +DW RT  FT V   L  P  H WYGFL  ++ GT     +KRV LDQ+LFAP  LA F S V+L++G + +I  KLR D  TT+++N+  WIPAQ+INF+FV   Y+VL+AN VGFFWNIYLSY
Sbjct:   25 RPDTSSLWQQYNKLLETHPLMTKCITAGAIAAVADVTCQV------------SFPSDEDAN-----------KSLLERMDWKRTRNFTIVNTFLFPPLAHYWYGFLSVKIVGTTFMAAIKRVVLDQMLFAPVLLASFFSAVLLVNGESDRIPDKLRNDLPTTILTNYTVWIPAQLINFQFVPIPYRVLWANAVGFFWNIYLSY 204
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BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: D0MT87_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MT87_PHYIT)

HSP 1 Score: 167 bits (422), Expect = 6.190e-44
Identity = 98/205 (47.80%), Postives = 124/205 (60.49%), Query Frame = 2 
Query:  239 IFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLK 853
            I+  Y SLLE+ PL TK VT GAIA  GDV CQL                 V E E      DG A+     +D  RT+ FTF+G  L++P LH WYGFL  RLPG + + V KR+ALDQL FAP FL + LS+V+ L+G+A  I  KLRAD+   + +NW  W+PAQ++NFRFV    QV+++N VG  WN YLSY S+  V K
Sbjct:   41 IWDTYASLLETHPLKTKIVTGGAIAGLGDVGCQL-----------------VLEGE------DGDAK-----LDVKRTVIFTFLGGLLISPVLHVWYGFLGSRLPGVSTSAVAKRLALDQLGFAPTFLPIILSSVLTLEGHAEDIPDKLRADWWPLMKANWVVWVPAQILNFRFVPGSMQVIFSNVVGLLWNSYLSYVSHSQVPK 217
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Match: A0A329SFZ2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SFZ2_9STRA)

HSP 1 Score: 166 bits (420), Expect = 9.110e-44
Identity = 99/205 (48.29%), Postives = 119/205 (58.05%), Query Frame = 2 
Query:  239 IFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFTFVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLK 853
             +  Y SLLE+ PL TK VT GAIA  GDV CQL+ LEV                       D  AR      D  RT  FTF+G  L++P LH WYGFL  RLPG +   V KR+ALDQL FAP FL V LS+V+ L+G+A  I  KLRAD+     +NW  W+PAQ++NFRFV    QVL++N VG  WN YLSY S+  V K
Sbjct:   34 FWDAYASLLETHPLRTKIVTGGAIAGLGDVGCQLV-LEVE----------------------DDDAR-----FDVKRTAIFTFLGGFLISPVLHVWYGFLGSRLPGVSTTAVAKRLALDQLGFAPTFLPVILSSVLALEGHAEDIPNKLRADWWPLTKANWVVWVPAQILNFRFVPGSMQVLFSNVVGLLWNAYLSYVSHSEVPK 210
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1047.340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL95_9PHAE1.310e-18395.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTH2_ECTSI1.860e-13896.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6A3NKH9_9STRA9.840e-4747.06Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A835YNC4_9STRA3.630e-4648.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W2Q4U2_PHYPN1.570e-4546.26Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A835YKC9_9STRA2.650e-4545.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A225WCL6_9STRA1.130e-4446.51Protein Mpv17 n=1 Tax=Phytophthora megakarya TaxID... [more]
A0A4Q2YFM0_9BACT3.330e-4445.32Mpv17/PMP22 family protein n=1 Tax=Verrucomicrobia... [more]
D0MT87_PHYIT6.190e-4447.80Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A329SFZ2_9STRA9.110e-4448.29Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1047contigE-siliculosus-1a_F_contig1047:24941..31504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size867
Model size1970
Exons5
Ec32 orthologEc-02_005610.1
Ec32 ortholog descriptionMpv17/PMP22
Hectar predicted targeting categorymitochondrion
BRITEko00000,ko00001,ko01000,ko01002
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EC3.4.17.21
EggNOG OGsKOG1944@1,KOG1944@2759
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
KEGG Pathwayko04146,map04146
KEGG koko:K01301,ko:K13347,ko:K13348
Seed eggNOG ortholog2880.D8LTH2
Seed ortholog evalue1.4e-113
Seed ortholog score416.0
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927548.961183-UTR-E-siliculosus-1a_F_contig1047:24940..260091622927548.961183-UTR-E-siliculosus-1a_F_contig1047:24940..26009Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1047 24941..26009 -
1696318580.187328-UTR-E-siliculosus-1a_F_contig1047:24940..260091696318580.187328-UTR-E-siliculosus-1a_F_contig1047:24940..26009Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1047 24941..26009 -
1622927549.0372765-UTR-E-siliculosus-1a_F_contig1047:31470..315041622927549.0372765-UTR-E-siliculosus-1a_F_contig1047:31470..31504Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1047 31471..31504 -
1696318580.2400067-UTR-E-siliculosus-1a_F_contig1047:31470..315041696318580.2400067-UTR-E-siliculosus-1a_F_contig1047:31470..31504Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1047 31471..31504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927548.97182-CDS-E-siliculosus-1a_F_contig1047:26009..261321622927548.97182-CDS-E-siliculosus-1a_F_contig1047:26009..26132Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 26010..26132 -
1696318580.1976693-CDS-E-siliculosus-1a_F_contig1047:26009..261321696318580.1976693-CDS-E-siliculosus-1a_F_contig1047:26009..26132Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 26010..26132 -
1622927548.9874134-CDS-E-siliculosus-1a_F_contig1047:26991..270991622927548.9874134-CDS-E-siliculosus-1a_F_contig1047:26991..27099Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 26992..27099 -
1696318580.2051344-CDS-E-siliculosus-1a_F_contig1047:26991..270991696318580.2051344-CDS-E-siliculosus-1a_F_contig1047:26991..27099Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 26992..27099 -
1622927549.0004663-CDS-E-siliculosus-1a_F_contig1047:27618..279771622927549.0004663-CDS-E-siliculosus-1a_F_contig1047:27618..27977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 27619..27977 -
1696318580.2126396-CDS-E-siliculosus-1a_F_contig1047:27618..279771696318580.2126396-CDS-E-siliculosus-1a_F_contig1047:27618..27977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 27619..27977 -
1622927549.0124707-CDS-E-siliculosus-1a_F_contig1047:29689..299381622927549.0124707-CDS-E-siliculosus-1a_F_contig1047:29689..29938Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 29690..29938 -
1696318580.2228475-CDS-E-siliculosus-1a_F_contig1047:29689..299381696318580.2228475-CDS-E-siliculosus-1a_F_contig1047:29689..29938Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 29690..29938 -
1622927549.0255861-CDS-E-siliculosus-1a_F_contig1047:31442..314701622927549.0255861-CDS-E-siliculosus-1a_F_contig1047:31442..31470Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 31443..31470 -
1696318580.2310734-CDS-E-siliculosus-1a_F_contig1047:31442..314701696318580.2310734-CDS-E-siliculosus-1a_F_contig1047:31442..31470Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1047 31443..31470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1047.340.1prot_E-siliculosus-1a_F_contig1047.340.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1047 26010..31470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1047.340.1

>prot_E-siliculosus-1a_F_contig1047.340.1 ID=prot_E-siliculosus-1a_F_contig1047.340.1|Name=mRNA_E-siliculosus-1a_F_contig1047.340.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=289bp
MPVASAVRKVAVVGHAQLLGARHRATTTSALPRRQCCGGSGTRSASTKAP
AQPPPTGAPKPTKPTRASIFSMYNSLLESRPLATKAVTSGAIAFAGDVSC
QLLALEVAKREEEQSSAQDVDEHEHQEPFGDGGARSVASEIDWGRTLRFT
FVGAALVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPGFLAVFL
STVMLLDGNAAKIDRKLRADYTTTVVSNWGYWIPAQVINFRFVAPVYQVL
YANFVGFFWNIYLSYQSNKAVLKDMEHPAGVDVTSSHK*
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mRNA from alignment at E-siliculosus-1a_F_contig1047:24941..31504-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1047.340.1 ID=mRNA_E-siliculosus-1a_F_contig1047.340.1|Name=mRNA_E-siliculosus-1a_F_contig1047.340.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6564bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:24941..31504- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCTGTACTGCTGCTTACGTTGGAAGGGGAGAGCATGCCGGTGGCTTCAG
CTGTTCGAAAGGGTGAGTTAGTGGTCATGCTTGATTTTCGGTCAACTGGC
GGCTAGGATAATACAGCAGTAGCAAGGCGATATTAATGCGGTGTATTTTT
TCACGCCGCCCCCTCCGCCCTAGTGTACGCGTCCAATCCGAAAGGGTGTC
TGCAATGTACAGCGCTCGGTGGGTGTTCTACACACTAAGTTTATGGGAAC
ATAGACAGCCGTATTGCTCCATTACGGTGGGGAATTGTAGGACGATCCTA
TATTGGCGGCTTCAACGCTCGTTGCTGGTGGGGCATAATATGACGATGTT
TCATGTCACACCTTCGACCCCGATCACGACGCATCCCCGAAACACAGCAG
GCGGTACAATTGTCCCCCCTGGGGCATACCCGTATTTCAGCAACACACAC
CCGGCTCTAGCACACCCCAGATTCATCATGGGAATACGCTTTTCAACACC
GGGGCAATGAGGTTGTGCCTTTTGGGCGTACGCGGCGACAGGCGCGCTTC
CGTCGGGTATCAACGCAATCCAGTCACCGACCACGTGCTGCTTCTGCTGC
TTCTGCTTCTTCTGCTTCTGCCGATGCACGATCGCTAAACGACCCGACTG
CGTCAGTGTTCTTGCTTTCCCTCCCGGTTGCCTGCGAGTTTTCAGCGCAT
CTTTTGCCCACATGTGCTGCACCGATGATATTGCTTCGACATGTAGCACT
CCCCATACAAGAATAGATGCATATGGGAGTGCAGAGAACATGACGCGCAA
TATTTTCAAAGCTTTTTCTTACCCAAACCGCTGTGTCTTTCTCTTGTTCC
TCCACCGCTCTTCTGGAGACGGCCTTTCGCTCGCAGCCCTGCCCTCGTCT
CACTGCCGTGTTGTTTCGATGAGCATTTTGGGCACGTGTCACAATTATTT
GCTGCTTGGTTGTCGCTTGCAGCACTGCTGTTGTTCCCGTTGGTACATTG
TACACGGTGGCGTGAAGTGGTCGACTCAGTCGTGTTTCGCCTGTTTTGAA
ATTCTGGCGTTCGGACCAGGTTTGTAAGGTCGCGACATACCGTTGCGGGT
ACGATAGCGCCCTGCGGGGATAGAGTTGGTCTCCGTGATAAACCATTGGT
GGTTGCCCAGATCTACCTAGATCGCGACCCTTGCAAAGTTGTTGCAAAAG
CGCGCATCCACTAGTAAACGCAAGGGTTGCGCCGCCCATTTCGCCAGACT
CGAATCAGTTGCAGTACACTCTTTGTGGCTGGATATGGAAGGAGGGCATT
TGCTCACAGCCCGCAGAGTTGGGTCGAGCTGGGTCCTAGAAGCCAACCAC
CGGTTGTCTCAACGCCGCCACGGGCGGTCCCTTCAGGCCCTGGCGTGCTC
TCTTCTCATCCCACGAAACCCTTCGAGTAGCAGCCAATCATCCAGCGTTT
TAAGCTCTGCTGCTACATGAGGTGATCTGTGTTGCGTGCGCACGTAACCC
CTGCCTCTACCTGACCCGCTTCTTTTTGTGCGCGTTTACCTTGTTGGTTT
GGACGACAAAAATCAGTGGCGGTTGTAGGTCATGCACAACTGTTGGGCGC
GCGACATCGCGCGACAACAACATCGGCGTTGCCTAGGCGACAATGTTGTG
GTGGTAGTGGAACGCGTTCGGCATCTACGAAGGCCCCAGCACAACCTCCA
CCCACCGGTGCTCCCAAGCCAACTAAGCCGACAAGAGCCTCCATTTTTTC
GATGTACAACTCCCTGCTGGAGTCCCGACCTCTGGCGACCAAAGCGGTCA
CCTCCGGAGCAATCGGTGAGGTTTCACGAGCGCCGAGTGTTTGCGTGTGC
CGTGTTCGCGGGCAACAAGAAGACTGCTGTATGGCTCTGCTTGCTGTGAA
ATGAGGCCCGTATATTAGTACCATTCGGCCATTCGAACGTTTCAGTTTGG
CTCTGCCCAAGTAACATATCCACATTTTGGGTACAGTCGACGGTCCTCAA
TAGCGGTGCCCTCGAAAGCGAGATGCCCTCTATTACGGCAACAAAATCGC
TTGGCACGAATGCATCCCTCAATAGCGGTACTTGTGCCGCTATTGAGGAA
TTAATCCTTTATAGCGGTATAGCCGCTATAAAGCCGCTATAAAGGACAAT
GTAATGCAAGACAAAGGCAAGGCGAGCTTAAAGGTAATAAGGATTCGGGG
GTGGCGGGGCTCACGGCTGCACTCAATGCGCTCAGTATGGGCGTGAAGGA
GGTAGCGGTGGGGGGAGGTGGTGAACAAGAGTCAGAGATGTGCGAGGTAC
TCTCGTACCTCGGCATCGTCCCGGGTAAGCCCGCCACCCCGGCAGCCATC
GATGCGGTCGAGTCTTGGGTGCAGCTAGAGGAGCAGGATGAGGTGGTCAA
GGCTCTCGCCGCGGACGCGGAGAAGGCGCTCAATGAGAACATAAATGATA
ACTTTACTGAGGACTCCGACTCCGACGAGGAGGAGCTGAAGAACGACAGG
AGGGAGGTTGAGAGTGCAGAGGATAGGAAGTTGATGGCGCCGCCGCCGGC
CGTACTCGGATCTGTCGGAAAATTTCGGTCCATTAGTAGAGCAGTATACG
CACAGTCGACTGGAAATGACGAGGCTGAGCATCTTCTTCGCAAGGCCAAG
ATGTCGTTCCTTGCCGCCCAAGCCGCTAAACCAGTCTTCTAGCAGTCAAG
ACATGAGAATGCTTCTTGAATCATAGGCGCGTCGTCGGTCAAGCACAGCA
GCAGTAGGTGTCTGCTCTTTTTTTTTTGCTCGCTCCAGGTTAACAACATT
TTTTCTGTACGCTGTGTGTGGCTCTGTTTGCTCCTGTGGTCCATTGATTT
AACGCTGTGGTATTTTATGTTTTTCTGTACGGTTCATTGCTCTGCTACGA
TACGACGAAAGGTGGGGGCGTAGTTAGTTGTAGAGTACAGCAGCAGTACA
GCACAGTACAGTACAGTACGGCACGATGATGATGATTTCTGATTGAGCCA
ATTCAATACTGATCTGGTGTCAGCACTAACTCAAAGTAGCTATGAACATG
CTGCTCTACGAGTGTATTATTAGTGGACGCAATGGTGTAGGTAACACATG
ACACCAACGAGCGTAGTGTGTGTGAAAACATACGGTTTCGTTGCCGCTCT
CATCCTCAAAAGCGGTATTGATACCGCTATTGAGGAATAGCTTCGGCGTT
GTTGCCGCTCTCGTCCTCAATAGCGGTATCATCACCGCTAATGAGGAATA
GCGGTATAGTACCGCTATTGAGGAATAGCGGCAGTGCCCTCAATAGCGGT
ATCAAGACCTCTTGTCACTACCTACCGCTATTGAGGACCGTCGACTGTAG
TATGAACCAGCTCTGAATGCCTACAAGGAGGGGAGTGACGTATGTTTTTC
GTCGAAACCTGTAACGCTTCCCAGCTCTACCTTGTCCCACCCGACCCTCT
CTCCTCCTTTCTGCTAACCTTTTCTTGCGCTTGTCTCCCATCCTTGGCAC
GTTTGGTGGCCCACCCACTCCCCCCAGCGTTTGCCGGAGACGTGTCCTGC
CAGCTGCTAGCGTTGGAGGTGGCGAAAAGAGAAGAGGAGCAATCATCGGC
GCAAGACGTCGACGAGCACGAGCACCAGGAGCCGTTTGGCGATGGAGGGG
CAAGGAGTGTCGCGAGCGAGATCGACTGGGGCCGCACGTTGCGATTCACG
TTCGTAGGGGCGGCCCTTGTGGCCCCTGCGCTACACGCGTGGTACGGGTT
CTTGATCCGAAGACTACCGGGCACCGCACCGGCTACGGTCGTCAAGAGGG
TGGCTCTCGACCAGCTGCTGTTCGCGCCGGGGTTTCTGGCCGTGTTTTTG
TCGACGGTGATGCTCTTGGACGGTAACGCGGCTAAGGTGAGAGAGGTTGG
GAGTTCGCGCGACTCGAGTGGCTGGTTTTGTCTAGCTTTGGTTTTTTTGT
CGGGTTAGTTGGTTCGCGCTTGATGGCCTGGTGTGTCCTTGGCTGAGAAC
CGGAGACGTGGCTGGTGGTGTAGACTAGTTGTTGGGATTTTTGCCGTTCA
CGCGAAGGCGCGGGCTCAGATTGTGGCTTGATCGCCTGCTGCGTGTTTGG
GTGCCGATTTCGTGTCGATGCGTGTGTAGATGTGGTCTATTTCTCGAGAC
ACAAGCGTGAACCGGCGATTGTGCACGCCATCCCAGAAACACCGCATGTT
CTCGCTTTGATCAACCAACCGTCTGGCTCTTGGGTCTATTCGTGTCTGCC
CGCTAGACGCAACCCTCGCTCGTGTCGCAGGAGCCCCTTTCATGGATGCG
GCAGCACGGCTCGTGGAAACATGCCTGTTCTGTGAAGAGCCCTGACCTGC
ATCGCAACAAGAACATGCGTTCATCCTACACCTTCTGCCGTCTGCTCCTC
TGCAGATCGACCGCAAGCTCCGAGCTGACTACACCACTACCGTGGTAAGC
AACTGGGGGTACTGGATACCCGCCCAGGTCATCAACTTCCGCTTCGTCGC
GCCTGTGTACCAGGTATGTACAGTGTACGATTTTTTAGTCGTGGAAGTGC
GTGCTTCGCGTTTTGCAAAACTGGGCTTGCGCCCCGGTGGAACACATGCC
GGTTGGAACAACATGATTTCCTTCAAGCAGGATTTTGGTGGGAGGATTAG
TGATATTTGGAAATTTTAAATTTGAGGGTGAAACCCGCTCAGAATTTTGT
ACAGCATTGGGCTCGTACGCTATACCGTTCGAGGGTGGTCGGCACCCTGA
GAAGTTAGCTTTGCCGGGACCACCGTGAAATTGTTTTCGTAAGCAATCCA
AGAGTATTTGGTAATCAAGTTTGGCGAAAGGAATGGGGTCGGTGCAAATG
TCGCAATTTGACCACCCTAGCTGGCTTTCTTGTTTGGTTGATTGGTGCCG
GGTTTCTTGTTTCTTGTTCGCAACCATATACGCCCGTTTCTATCTGTGCC
GTCCGATGCGCATGTGTTATGACCTCCGCAAGCATACTGTTCCCGGTATC
AATATCCTTTGGGGACCCACTCCTGGCCAACGTAGTGTCCTCGTAATAGA
ACCGCTGCTGTGTAGGTGTCACTGCGTTAATTACTGCGCGGTGTTTGTGT
CACCTTTCCGGCCCGTGAACTGTGTTGGGGCTCTTCAGAGTTCATTGTCA
TGGTTGATCGACATTCTCTCTGCGACACTGCATGCCATGTTGTCAATTTT
CTGCCAACATTTCTCGACCTCTTGTTTACAACAGCGCTATCTTGCATCCC
TCGAAAAAATCACACGGTCTCTAACCCAACCTATCTGCACCTTCTTAAGC
GTTTGCACGTGCCGTTCTCACCCCCTTATATGTCGATGCGGTTTCTTGAC
CAAATTGGGCCGACTCCAACAGGTCTTGTACGCGAACTTCGTTGGGTTCT
TCTGGAACATTTACCTGTCCTACCAGTCCAACAAGGCAGTGCTCAAGGAC
ATGGAGCATCCCGCAGGGGTAGACGTCACTTCTTCGCACAAGTGAAGAGT
AGCGTTGCAGCTCTTGGCCCGCTGCTGCATTTCGTGTGCGTGTCGTCGCC
GTGCTGTCGTGTGAACATGACTATGCCGTTGTCGTTCGTGTGGCATACCA
TACTGCCGTGTGTCACATCCACCAGGCATGAAATCGTGAAATTTTCGGGT
GGTTTTGTCTTACCGGACTATCGATAGTGATGCAACGACGTGTTCGGAAC
CCTTTTGTTTATCCAATGCTTGTTTTTTGCCCGTTTTGTTATGGCGCGTT
CAGTTCTCCAGCCCGTTTACAGTAGTAGCCGTCGATCTAAGATGCGCAAT
CTGTGCCTTATCAAGACATTGCTTCGTTCGGAGTTGACCAGTCTTGGGCG
GGTCGGCCCGCGTGTTGGTGACAAATTATTTTTTGGGTACGTATTTAATT
TTTAGATGCATGCTTGAGTTGATATATAGATTTGAGAACACGAGTTTCCA
GTCGTGAAAGTGATGGGTGCAGGCAGGGGTGACCTTTGTTGCATACGGGA
GATGATCAGTTGGCGATCAGAGTTTAGCTGCAACTTGGAGGTTCGATCAG
TCTTTTTCCCCGTTTTTTGCGCGAGAACACTCACAACTAGTGCCCACACC
GCCCGAAGCAATGGAAGCTTGAACTGCAGTGTAGGATGACACACGGCGAG
TGCCATGGATTGTTGTTGCCCTCTAGATAGAACGAACTGGTCTGCCGTTG
TGGCAGGGGGGTGTTCCGTTCGTTGGCTGGCACGCATAGTCCAATACGGT
CGAAGGTGTGTTTGTTTTGACGTTTGGCTGTGGTGGGTGTCCGTGGTGCC
CTTTCCAATGTTTTTTGTCAACCCTTCGGGTACGCAGTATGCAGCGCAGC
TGGAGTGCACGTATTCTTTTATGACGTCCTCTTTTCGGGAGTGCGGAGGA
CCATTATTTGGTCGCTTAAGAAGGTATCTTGTTGAGCATGTAGCGAACGT
TTCAGCTGTTGCCCTTGACCGGACCTTGGTCATGTTTAGGCCCAGACTTG
TGCTTGCGTTTGCTCTAAAGGAGGGGACTAACGCGTCCGTAAACGGGCCG
TACGAAGACCATCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1047:24941..31504-

>mRNA_E-siliculosus-1a_F_contig1047.340.1 ID=mRNA_E-siliculosus-1a_F_contig1047.340.1|Name=mRNA_E-siliculosus-1a_F_contig1047.340.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1734bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:24941..31504- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGGTGGCTTCAGCTGTTCGAAAGGATGCCGGTGGCTTCAGCTGTTC
GAAAGGTGGCGGTTGTAGGTCATGCACAACTGTTGGGCGCGCGACATCGC
GCGACAACAACATCGGCGTTGCCTAGGCGACAATGTTGTGGTGGTAGTGG
AACGCGTTCGGCATCTACGAAGGCCCCAGCACAACCTCCACCCACCGGTG
CTCCCAAGCCAACTAAGCCGACAAGAGCCTCCATTTTTTCGATGTACAAC
TCCCTGCTGGAGTCCCGACCTCTGGCGACCAAAGCGGTCACCTCCGGAGC
AATCGTGGCGGTTGTAGGTCATGCACAACTGTTGGGCGCGCGACATCGCG
CGACAACAACATCGGCGTTGCCTAGGCGACAATGTTGTGGTGGTAGTGGA
ACGCGTTCGGCATCTACGAAGGCCCCAGCACAACCTCCACCCACCGGTGC
TCCCAAGCCAACTAAGCCGACAAGAGCCTCCATTTTTTCGATGTACAACT
CCCTGCTGGAGTCCCGACCTCTGGCGACCAAAGCGGTCACCTCCGGAGCA
ATCGCGTTTGCCGGAGACGTGTCCTGCCAGCTGCTAGCGTTGGAGGTGGC
GAAAAGAGAAGAGGAGCAATCATCGGCGCAAGACGTCGACGAGCACGAGC
ACCAGGAGCCGTTTGGCGATGGAGGGGCAAGGAGTGTCGCGAGCGAGATC
GACTGGGGCCGCACGTTGCGATTCACGTTCGTAGGGGCGGCCCTTGTGGC
CCCTGCGCTACACGCGTGGTACGGGTTCTTGATCCGAAGACTACCGGGCA
CCGCACCGGCTACGGTCGTCAAGAGGGTGGCTCTCGACCAGCTGCTGTTC
GCGCCGGGGTTTCTGGCCGTGTTTTTGTCGACGGTGATGCTCTTGGACGG
TAACGCGGCTAAGCGTTTGCCGGAGACGTGTCCTGCCAGCTGCTAGCGTT
GGAGGTGGCGAAAAGAGAAGAGGAGCAATCATCGGCGCAAGACGTCGACG
AGCACGAGCACCAGGAGCCGTTTGGCGATGGAGGGGCAAGGAGTGTCGCG
AGCGAGATCGACTGGGGCCGCACGTTGCGATTCACGTTCGTAGGGGCGGC
CCTTGTGGCCCCTGCGCTACACGCGTGGTACGGGTTCTTGATCCGAAGAC
TACCGGGCACCGCACCGGCTACGGTCGTCAAGAGGGTGGCTCTCGACCAG
CTGCTGTTCGCGCCGGGGTTTCTGGCCGTGTTTTTGTCGACGGTGATGCT
CTTGGACGGTAACGCGGCTAAGATCGACCGCAAGCTCCGAGCTGACTACA
CCACTACCGTGGTAAGCAACTGGGGGTACTGGATACCCGCCCAGGTCATC
AACTTCCGCTTCGTCGCGCCTGTGTACCAGATCGACCGCAAGCTCCGAGC
TGACTACACCACTACCGTGGTAAGCAACTGGGGGTACTGGATACCCGCCC
AGGTCATCAACTTCCGCTTCGTCGCGCCTGTGTACCAGGTCTTGTACGCG
AACTTCGTTGGGTTCTTCTGGAACATTTACCTGTCCTACCAGTCCAACAA
GGCAGTGCTCAAGGACATGGAGCATCCCGCAGGGGTAGACGTCACTTCTT
CGCACAAGTGAGTCTTGTACGCGAACTTCGTTGGGTTCTTCTGGAACATT
TACCTGTCCTACCAGTCCAACAAGGCAGTGCTCAAGGACATGGAGCATCC
CGCAGGGGTAGACGTCACTTCTTCGCACAAGTGA
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