Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match:
D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)
HSP 1 Score: 203 bits (517), Expect = 3.290e-58
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 1
Query: 49 SGLNPARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADITR 357
SGLNPARNAATYFVSRFLSRCAGK+ESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKD KGGSSGARDQQYCLMAMDVLGRVAGGLADITR
Sbjct: 810 SGLNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDLKGGSSGARDQQYCLMAMDVLGRVAGGLADITR 912
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match:
A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE)
HSP 1 Score: 108 bits (269), Expect = 8.280e-25
Identity = 62/103 (60.19%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 49 SGLNPARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADITR 357
SGLNPARNAATYFVSRFLSRC GALVKDLKDQKGG+SGARDQQYCLMAMDVLGRVAGGLADITR
Sbjct: 893 SGLNPARNAATYFVSRFLSRC----------------------------------------GALVKDLKDQKGGTSGARDQQYCLMAMDVLGRVAGGLADITR 955
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match:
A0A835Z2V2_9STRA (Sister chromatid cohesion protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2V2_9STRA)
HSP 1 Score: 76.6 bits (187), Expect = 9.560e-14
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 49 SGLNPARNAATYFVSRFLSRCAGK-DESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADITR 357
+GL A + +F +RF++RC K D+ F+ LL N VDDL++ + EWPAAELLLHA C AL+ DL Q MA+D+L +VA +A + R
Sbjct: 416 AGLAGASAMSRFFAARFIARCQKKEDDGQEFRRLLVNLVDDLVSALPFAEWPAAELLLHAFCKALITDLPKMA--------QHAVFMALDILTKVATAVAALQR 511
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match:
A0A7S4RR27_9STRA (Sister chromatid cohesion protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR27_9STRA)
HSP 1 Score: 74.3 bits (181), Expect = 6.160e-13
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 1
Query: 49 SGLNPARNAATYFVSRFLSRCAGKDE---SANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDL------KDQKGGSSGARDQQYCLMAMDVLGRVAGGL 342
SGL ++ +F S+ + RC+ K E ++ F+P+L+N VDDLLA LLPE+PAAE+LL +LC L DL K +S + + Y AMD +G++ +
Sbjct: 350 SGLKGCQSVCDFFTSQMIQRCSRKGEEGGASEFRPVLSNLVDDLLAVQLLPEYPAAEMLLLSLCRRLSHDLLRSSSASVNKNTTSTSAETTYLSTAMDTMGKICSSI 456
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match:
A0A0D2X1A1_CAPO3 (Sister chromatid cohesion protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X1A1_CAPO3)
HSP 1 Score: 69.7 bits (169), Expect = 2.550e-11
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 1
Query: 73 AATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSG--ARDQQYCLMAMDVLGRVA 333
AA FV+ FL RC K + +++P+L + DLL + LPEWPAAE++LH LC AL+ + + A D L+A++++G VA
Sbjct: 589 AAQEFVTTFLKRCTNKKDENDYKPVLESFAKDLLTVLHLPEWPAAEVVLHTLCAALIPIVNGAISSTDATKASDSALRLLAIEIVGMVA 677
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match:
A0A6G0X3I6_9STRA (Sister chromatid cohesion protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3I6_9STRA)
HSP 1 Score: 68.2 bits (165), Expect = 8.760e-11
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 1
Query: 46 QSGLNPARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADIT 354
Q L+ R A V F+ +C K+E +F+ N VDDLLA +L PEWPA E++L A+ G L + QK S + Q L+A+ +LG++ + ++
Sbjct: 448 QISLDGVRETAKSIVHCFVQKCMKKEEDHDFRQKFENFVDDLLAMMLFPEWPAVEVILMAVSGGLTNLMVQQK---SSKLESQSSLLALHLLGKICASIRQVS 547
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match:
A0A485K4A2_9STRA (Sister chromatid cohesion protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K4A2_9STRA)
HSP 1 Score: 68.2 bits (165), Expect = 8.760e-11
Identity = 34/100 (34.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query: 55 LNPARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADIT 354
L+ R+ + V F+ RC K+E +++ + N VDDLLA +L PEWPA EL+L A+ L + QK + + Q L+A+++LG++ + I+
Sbjct: 466 LDSVRDTSRSIVHSFMQRCMKKEEENDYRQVFENFVDDLLAMLLSPEWPAVELILEAMTAGLTNLMSQQK---TSKLESQSSLLALNLLGKICATIRQIS 562
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match:
A0A1E7FX63_9STRA (Sister chromatid cohesion protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX63_9STRA)
HSP 1 Score: 67.8 bits (164), Expect = 1.200e-10
Identity = 35/115 (30.43%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 49 SGLNPARNAATYFVSRFLSRCAGKDE---SANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDL---KDQKGGSSGARDQQYCLMAMDVLGRVAGGLADITRYSSRPA 375
SGL + + +FV+ L RC+ K E ++ F+P+L+N ++DLL +L+PE+PAAE+++ ++ ++ +D+ KGG Y D LG+++ +A I +++ A
Sbjct: 346 SGLGACQAVSDFFVNHLLRRCSKKGEDGGASEFRPILSNLIEDLLLVLLVPEYPAAEMIVLSIANSMYRDIIQMTSSKGGKESITTT-YFNTIFDALGKISAAVARINKWNEEHA 459
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match:
A0A7F5R8R5_AGRPL (nipped-B-like protein A n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R8R5_AGRPL)
HSP 1 Score: 66.6 bits (161), Expect = 3.000e-10
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 1
Query: 64 ARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGL 342
A A F++ FLS+C K E +++PL N V DLLATV PEWPA ELLL L LVK+ ++ D + ++D LG VA L
Sbjct: 769 ATTTAGTFLAVFLSKCGSKSEDIDYRPLFENFVQDLLATVNKPEWPATELLLSLLGKMLVKNFSNK------GTDMSLRVASLDYLGVVAARL 855
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match:
A0A7F5R8P1_AGRPL (Nipped-B protein n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R8P1_AGRPL)
HSP 1 Score: 66.6 bits (161), Expect = 3.060e-10
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 1
Query: 64 ARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGL 342
A A F++ FLS+C K E +++PL N V DLLATV PEWPA ELLL L LVK+ ++ D + ++D LG VA L
Sbjct: 769 ATTTAGTFLAVFLSKCGSKSEDIDYRPLFENFVQDLLATVNKPEWPATELLLSLLGKMLVKNFSNK------GTDMSLRVASLDYLGVVAARL 855
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 3.29e-58 / Id = 98.06 Expect = 8.28e-25 / Id = 60.19 Expect = 9.56e-14 / Id = 41.35 Expect = 6.16e-13 / Id = 38.32 Expect = 2.55e-11 / Id = 39.33 Expect = 8.76e-11 / Id = 34.95 Expect = 8.76e-11 / Id = 34.00 Expect = 1.20e-10 / Id = 30.43 Expect = 3.00e-10 / Id = 41.94 Expect = 3.06e-10 / Id = 41.94 Sequence D7FSV8_ECTSI A0A6H5JLU6_9PHAE A0A835Z2V2_9STRA A0A7S4RR27_9STRA A0A0D2X1A1_CAPO3 A0A6G0X3I6_9STRA A0A485K4A2_9STRA A0A1E7FX63_9STRA A0A7F5R8R5_AGRPL A0A7F5R8P1_AGRPL Pages
back to top
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10460.335.1
>prot_E-siliculosus-1a_F_contig10460.335.1 ID=prot_E-siliculosus-1a_F_contig10460.335.1|Name=mRNA_E-siliculosus-1a_F_contig10460.335.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=127bp
RRRQQLQKKRQQEQQQSGLNPARNAATYFVSRFLSRCAGKDESANFQPLL back to top mRNA from alignment at E-siliculosus-1a_F_contig10460:266..1412-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10460.335.1 ID=mRNA_E-siliculosus-1a_F_contig10460.335.1|Name=mRNA_E-siliculosus-1a_F_contig10460.335.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1147bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10460:266..1412- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)AGGAGGAGGCAGCAGCTGCAGAAGAAGCGGCAGCAAGAGCAGCAGCAGAG
CGGGCTCAACCCTGCGAGGAATGCGGCCACGTACTTCGTCTCGCGGTTCC
TTTCCAG GTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGC
TGTCGTTGTTGCTAGGCACGGTTTAGCAAAGAGCACAATCGTCCCCGCTT
CAAAGCACTCGTTCATGGTTTTTCTCCTGAGAAGGCCTCCTTAGAGCGAG
CACGCGTCCTGAAGTTTAGACTCCCCGGACATAAATGCTTAGGGGCAACA
TGCTCCTGAAAACAATGGTGTCCTATGTGTACGTGGGGGGTGCCTTTTTC
TTTTGTGTGTCGTTGTGGTTGGCACGACTGTGCTCGTACTCGCATCGATG
CCTTTTCGTAGTACTGCTCTTGGCGTGCTTCGTAGATTGGCTTGCCGCCT
GGGGAGCGCACCGCTTTGCAGGAAGGGAGTCTTCCTCCTTTTGCCCCCAA
GCGTATCGTCCGGCGAAGCTAGCTTTTCATTCGTCTCGCCTCCTGCTGTC
GTTCGGATCGCTACCGATGGATTCGTGTGTCGTGCTACGGGTGTCGTGTC
AAGGTGTGCCGGTAAGGACGAGAGCGCCAACTTCCAGCCGCTCCTGGCCA
ACACCGTCGACGACCTGCTGGCCACTGTCTTGCTTCCGGAGTGGCCGGCG
GCGGAGCTTCTCCTTCATGCTCT GTGAGTGTGTATGTCGTGTTTGTGTTG
TTGCTTGTTGTCGTGGTTGTTATTATTGTTGTCGCTGTTCATGGTGTCGT
TGTTGGTGCCGTTGTTTTTGTCAGTTTCGTCGGCGTCGTTGTCGCTGTTG
CTGCCGTTGTCGCTGTTGCTGCCGTTGCTGCCGTTGCTGCCGTTGCTGTT
GTTACCGTTGTTGGTGTTGATGTTGGGTGGTGACGTTGTCGTTGATTGTT
GTTGATGATGGTGAATCTTGCTGTTGTGGTTGATGTGGTTCAGGTGCGGG
GCGTTGGTGAAGGACCTCAAGGACCAGAAAGGGGGCTCTTCAGGCGCGAG
GGACCAGCAGTACTGCCTCATGGCCATGGATGTCCTCGGACGGGTGGCCG
GTGGCTTAGCGGATATCACCAGGTACAGCAGTCGTCCCGCTTTTTAA back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10460:266..1412-
>mRNA_E-siliculosus-1a_F_contig10460.335.1 ID=mRNA_E-siliculosus-1a_F_contig10460.335.1|Name=mRNA_E-siliculosus-1a_F_contig10460.335.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10460:266..1412- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top