mRNA_E-siliculosus-1a_F_contig10459.332.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_E-siliculosus-1a_F_contig10459.332.1 vs. uniprot
Match: D7FMG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG6_ECTSI)

HSP 1 Score: 528 bits (1360), Expect = 6.360e-181
Identity = 306/353 (86.69%), Postives = 315/353 (89.24%), Query Frame = 2

Query:   14 GGERTR-PFHPSTAAAV*TREERGGDLMDPTTTAKLATTACKHRKDGQKFLTAVLETSQGIDVSVDSQELAGHVDEHFDGHAEGGKAIVEGFKRVSEHISDDGENVDDGILEDSAEVIVGAVESVANNEMVQNAGELVGDAVGVAHDALREGVKTGMEAVHGAARAMNKACGVTSRGMPDIEGVEERAERCAESMETQAEGLSDSAAEAFDRAREKAPGVLRAVDPDGTLEEAVEEVXXXXXXAVMEILGGEVAEEALEAAAGSIPVAGALIPSYYLVHGGVKAAAGVTSLAAAGTMALVGGVYGIAAAPFDGGASWGKVANASRGASVWGASIGAEGGLIAAKGAMGFADQV 1069
            GGE    P        V  R ER  DLMDPT TAKLATTA K+RKDG KFLTAVLETS+GIDVSVDSQELAGHVDEHFD HAEGGKAIVEGFKRVSEHISDDG NVDDGILEDSAE IVGAVESVANNE+VQNAGELVGDAVGV HDALREGVKTG E VHGAARAMNKA GVTSRGMPDIEGVEERAER AESMETQAEGLSDSAAEAFDRARE AP VLRAVDPDGTLEEAV   XXXXXX   E+LGGE+AEEALEAA GSIPVAGALIPSYYL+HGGVKAAAG TSLAAAGTMALVGGVYG+AAAPFDGGASWGKVANASRGASVWGAS+GAEGGLI+AKGAMGFADQV
Sbjct:  105 GGENAPVPASYCRCCCVNERRERR-DLMDPTLTAKLATTAFKNRKDGDKFLTAVLETSRGIDVSVDSQELAGHVDEHFDSHAEGGKAIVEGFKRVSEHISDDGANVDDGILEDSAEAIVGAVESVANNEIVQNAGELVGDAVGVVHDALREGVKTGTEVVHGAARAMNKAGGVTSRGMPDIEGVEERAERYAESMETQAEGLSDSAAEAFDRARENAPDVLRAVDPDGTLEEAVXXXXXXXXXXXXEVLGGEIAEEALEAAVGSIPVAGALIPSYYLIHGGVKAAAGATSLAAAGTMALVGGVYGLAAAPFDGGASWGKVANASRGASVWGASMGAEGGLISAKGAMGFADQV 456

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BLAST of mRNA_E-siliculosus-1a_F_contig10459.332.1 vs. uniprot
Match: A0A6H5JP55_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP55_9PHAE)

HSP 1 Score: 346 bits (888), Expect = 1.190e-116
Identity = 198/232 (85.34%), Postives = 208/232 (89.66%), Query Frame = 2

Query:  341 LEDSAEVIVGAVESVANNEMVQNAGELVGDAVGVAHDALREGVKTGMEAVHGAARAMNKACGVTSRGMPDIEGVEERAERCAESMETQAEGLSDSAAEAFDRAREKAPGVLRAVDPDGTLEEAVEEVXXXXXXAVMEILGGEVAEEALEAAAGSIPVAGALIPSYYLVHGGVKAAAGVTSLAAAGTMALVGGVYGIAAAPFDGGASWGKVANASRGASVWGASIGAEGGLIA 1036
            +EDSAE IVGAVESVA+NE+VQNAGE+VGDAVGV HDALREGVKTG E VHGAARAMN+A GVTSR MPDIEGV+ERAER AESMETQAEGL+DSAAEAFD ARE  P VLRAVD DGTLE  VEEV      AV+EILGGEVAEE LEAAAGSIPVAGALIPSYYL+HGGVKAAA VTSLAAAGTMALVGGVYGI AAPFDGGASWGKVANASRG SVWGAS+GAEGGLIA
Sbjct:    1 MEDSAEAIVGAVESVASNEIVQNAGEVVGDAVGVVHDALREGVKTGTEVVHGAARAMNQAGGVTSRDMPDIEGVKERAERYAESMETQAEGLADSAAEAFDWARENTPDVLRAVDTDGTLEVMVEEVTQEAGEAVVEILGGEVAEEMLEAAAGSIPVAGALIPSYYLMHGGVKAAAEVTSLAAAGTMALVGGVYGIGAAPFDGGASWGKVANASRGVSVWGASMGAEGGLIA 232

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BLAST of mRNA_E-siliculosus-1a_F_contig10459.332.1 vs. uniprot
Match: A0A6H5K4Z4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z4_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 9.470e-89
Identity = 174/262 (66.41%), Postives = 180/262 (68.70%), Query Frame = 2

Query:  332 DGILEDSAEVIVGAVESVANNEMVQNAGELVGDAVGVAHDALREGVKTGMEAVHGAARAMNKACGVTSRGMPDIEGVEERAERCAESMETQAEGLS----------------------------------------------------------DSAAEAFDRAREKAPGVLRAVDPDGTLEEAVEEVXXXXXXAVMEILGGEVAEEALEAAAGSIPVAGALIPSYYLVHGGVKAAAGVTSLAAAGTMALVGGVYGIAAAPF 943
            DGILEDSAE IVGAVESVANNE+VQNAGE+VGDAVGV HDALREGVKTG E VHGAARAMN+A GVTSRGMPDIEGVEERAE  A+SMETQAEGL                                                             AAEAFDRARE AP VL AVDPDGTLEE VEEV      AV+E LGGEVAEE LEAAAGSIPVAGALIPSYYL+HGGVKAA GVTSLAAAGTM LVGGVYGIAAAPF
Sbjct:   45 DGILEDSAEAIVGAVESVANNEIVQNAGEVVGDAVGVVHDALREGVKTGTEVVHGAARAMNQASGVTSRGMPDIEGVEERAESFADSMETQAEGLXRCILLRGVKTGTEVVHGAARAMNQASGVTSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEAFDRARENAPDVLGAVDPDGTLEEVVEEVTQEAGEAVVESLGGEVAEELLEAAAGSIPVAGALIPSYYLMHGGVKAAVGVTSLAAAGTMTLVGGVYGIAAAPF 306

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BLAST of mRNA_E-siliculosus-1a_F_contig10459.332.1 vs. uniprot
Match: A0A6H5KJK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK3_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 7.470e-60
Identity = 115/143 (80.42%), Postives = 122/143 (85.31%), Query Frame = 2

Query:  332 DGILEDSAEVIVGAVESVANNEMVQNAGELVGDAVGVAHDALREGVKTGMEAVHGAARAMNKACGVTSRGMPDIEGVEERAERCAESMETQAEGLSDSAAEAFDRAREKAPGVLRAVDPDGTLEEAVEEVXXXXXXAVMEILG 760
            DGILEDSA+ IVGAVESVANNE+VQNAGE+VGDAVGV HDALREGVKTG E VHGA RAMN+A GV SRGMPDIEGVEERAE  A+ METQAE  +DSAAEAFDRARE AP VLRAVDPDGTLEE VEEV      AV+EILG
Sbjct:   45 DGILEDSAKAIVGAVESVANNEIVQNAGEVVGDAVGVVHDALREGVKTGTEVVHGAVRAMNQAGGVASRGMPDIEGVEERAESYADLMETQAE-WADSAAEAFDRARENAPDVLRAVDPDGTLEEVVEEVTQEAGEAVVEILG 186

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BLAST of mRNA_E-siliculosus-1a_F_contig10459.332.1 vs. uniprot
Match: A0A6H5K751_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K751_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 8.910e-35
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 2

Query:   92 MDPTTTAKLATTACKHRKDGQKFLTAVLETSQGIDVSVDSQELAGHVDEHFDGHAEGGKAIVEGFKRV 295
            MDPTTTAKLATTACKHRKDGQKFLTAVLETSQGIDVSVDS+ELAGHVDEHFDGHAE GKAIVEGFKR 
Sbjct:    1 MDPTTTAKLATTACKHRKDGQKFLTAVLETSQGIDVSVDSEELAGHVDEHFDGHAEAGKAIVEGFKRA 68

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig10459.332.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig10459.332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FMG6_ECTSI	6.360e-181	86.69	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JP55_9PHAE	1.190e-116	85.34	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5K4Z4_9PHAE	9.470e-89	66.41	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KJK3_9PHAE	7.470e-60	80.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K751_9PHAE	8.910e-35	95.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig10459	contig	E-siliculosus-1a_F_contig10459:107..1672 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig10459:107..1672-
coding sequence from alignment at E-siliculosus-1a_F_contig10459:107..1672-

protein sequence of mRNA_E-siliculosus-1a_F_contig10459.332.1

>prot_E-siliculosus-1a_F_contig10459.332.1 ID=prot_E-siliculosus-1a_F_contig10459.332.1|Name=mRNA_E-siliculosus-1a_F_contig10459.332.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=326bp
MDPTTTAKLATTACKHRKDGQKFLTAVLETSQGIDVSVDSQELAGHVDEH
FDGHAEGGKAIVEGFKRVSEHISDDGENVDDGILEDSAEVIVGAVESVAN
NEMVQNAGELVGDAVGVAHDALREGVKTGMEAVHGAARAMNKACGVTSRG
MPDIEGVEERAERCAESMETQAEGLSDSAAEAFDRAREKAPGVLRAVDPD
GTLEEAVEEVTEEVGEAVMEILGGEVAEEALEAAAGSIPVAGALIPSYYL
VHGGVKAAAGVTSLAAAGTMALVGGVYGIAAAPFDGGASWGKVANASRGA
SVWGASIGAEGGLIAAKGAMGFADQV

mRNA from alignment at E-siliculosus-1a_F_contig10459:107..1672-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig10459.332.1 ID=mRNA_E-siliculosus-1a_F_contig10459.332.1|Name=mRNA_E-siliculosus-1a_F_contig10459.332.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1566bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10459:107..1672- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AACGCCCGAACACGGGGGGGAGAGAACGCGCCCGTTCCATCCTTCTACTG
CTGCTGCTGTGTGAACGAGAGAAGAGAGAGGTGGCGACCTGATGGATCCG
ACTACCACCGCTAAGCTTGCGACAACGGCATGCAAGCACAGGAAAGACGG
ACAGAAATTCCTGACCGCGGTGCTGGAGACCAGCCAAGGCATCGACGTCT
CGGTGGACTCCCAAGAGCTCGCCGGACACGTCGACGAGCATTTCGACGGC
CACGCGGAGGGGGGGAAGGCCATCGTGGAGGGGTTTAAGAGGGTAAGTTA
TGTTGTTACTGCTGCTGCTGCTGCTGCTGGCTGCTGGTTGGTTTGCTGGT
TGTTGTTGTCGTTTCGGATTATACCCATCCTGTAGGCCATCCAAGTCACC
ACAACGTCACGTGTACGGAAGTCCTCAACAACCATCGAAAGGCGCGCACC
ACGCCCCCCATTATTCCGGCCCGGTCAGGCACACGGCTGCCGACGCTCGA
GACAGACCGGGAGCGCCCGAGAAACGTTGCACCTACACTGTGCTCAAACG
CCCCGCTTACGACCCATCCGGTCCCACGAGCCCTGCTTCAGAAATAAATG
TGATAGACTCAGACAGTGAACGCATCAGTAGACGACTGCGACGACCTGAC
ATATTCTGACTCAATTGTCTAATGGATGCTTTATCCCCGGAAAATACTCT
GATGAGAACTGGCGCTCATTCCGCCACTTCCCCCAGTCATTCATTCCGTC
CATCCGCCCCATCCATCCCGTCAATTCTTTCATACGCAGGTTTCTGAACA
CATCTCCGACGACGGGGAGAACGTAGACGACGGCATCCTGGAAGATTCAG
CGGAAGTGATCGTCGGCGCGGTGGAGAGTGTGGCGAACAACGAGATGGTC
CAGAATGCCGGGGAGCTGGTCGGGGATGCGGTGGGCGTCGCGCACGACGC
TCTTCGAGAGGGTGTCAAGACGGGGATGGAGGCCGTCCATGGAGCAGCCC
GCGCCATGAACAAAGCATGCGGGGTTACCTCTCGAGGCATGCCTGACATC
GAGGGCGTCGAAGAACGTGCCGAGCGTTGCGCCGAGTCGATGGAAACCCA
AGCCGAAGGGCTTTCTGATTCTGCCGCGGAGGCCTTCGACCGGGCCCGGG
AAAAAGCCCCAGGCGTCCTCAGAGCTGTCGACCCTGACGGAACGCTGGAA
GAAGCGGTCGAAGAAGTGACCGAAGAAGTAGGGGAAGCCGTGATGGAAAT
CTTGGGGGGAGAAGTCGCAGAAGAGGCGTTGGAGGCGGCAGCCGGAAGTA
TTCCCGTCGCGGGCGCCCTAATCCCCTCGTACTACCTGGTCCACGGGGGT
GTGAAGGCCGCCGCCGGAGTAACCAGCCTGGCTGCGGCAGGCACGATGGC
TTTGGTTGGAGGGGTGTACGGCATCGCGGCCGCGCCGTTCGACGGTGGGG
CATCCTGGGGCAAGGTCGCGAACGCTTCGAGGGGGGCCTCTGTTTGGGGC
GCGAGCATTGGCGCAGAGGGCGGACTGATCGCCGCCAAGGGCGCGATGGG
ATTCGCGGACCAGGTA

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10459:107..1672-

>mRNA_E-siliculosus-1a_F_contig10459.332.1 ID=mRNA_E-siliculosus-1a_F_contig10459.332.1|Name=mRNA_E-siliculosus-1a_F_contig10459.332.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1956bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10459:107..1672- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGATCCGACTACCACCGCTAAGCTTGCGACAACGGCATGCAAGCACAG
GAAAGACGGACAGAAATTCCTGACCGCGGTGCTGGAGACCAGCCAAGGCA
TCGACGTCTCGGTGGACTCCCAAGAGCTCGCCGGACACGTCGACGAGCAT
TTCGACGGCCACGCGGAGGGGGGGAAGGCCATCGTGGAGGGGTTTAAGAG
GATGGATCCGACTACCACCGCTAAGCTTGCGACAACGGCATGCAAGCACA
GGAAAGACGGACAGAAATTCCTGACCGCGGTGCTGGAGACCAGCCAAGGC
ATCGACGTCTCGGTGGACTCCCAAGAGCTCGCCGGACACGTCGACGAGCA
TTTCGACGGCCACGCGGAGGGGGGGAAGGCCATCGTGGAGGGGTTTAAGA
GGGTTTCTGAACACATCTCCGACGACGGGGAGAACGTAGACGACGGCATC
CTGGAAGATTCAGCGGAAGTGATCGTCGGCGCGGTGGAGAGTGTGGCGAA
CAACGAGATGGTCCAGAATGCCGGGGAGCTGGTCGGGGATGCGGTGGGCG
TCGCGCACGACGCTCTTCGAGAGGGTGTCAAGACGGGGATGGAGGCCGTC
CATGGAGCAGCCCGCGCCATGAACAAAGCATGCGGGGTTACCTCTCGAGG
CATGCCTGACATCGAGGGCGTCGAAGAACGTGCCGAGCGTTGCGCCGAGT
CGATGGAAACCCAAGCCGAAGGGCTTTCTGATTCTGCCGCGGAGGCCTTC
GACCGGGCCCGGGAAAAAGCCCCAGGCGTCCTCAGAGCTGTCGACCCTGA
CGGAACGCTGGAAGAAGCGGTCGAAGAAGTGACCGAAGAAGTAGGGGAAG
CCGTGATGGAAATCTTGGGGGGAGAAGTCGCAGAAGAGGCGTTGGAGGCG
GCAGCCGGAAGTATTCCCGTCGCGGGCGCCCTAATCCCCTCGTACTACCT
GGTCCACGGGGGTGTGAAGGCCGCCGCCGGAGTAACCAGCCTGGCTGCGG
CAGGCACGATGGCTTTGGTTGGAGGGGTGTACGGCATCGCGGCCGCGCCG
TTCGACGGTGGGGCATCCTGGGGCAAGGTCGCGAACGCTTCGAGGGGGGC
CTCTGTTTGGGGCGCGAGCATTGGCGCAGAGGGCGGACTGATCGCCGCCA
AGGGCGCGATGGGATTCGCGGACCAGGTAGTTTCTGAACACATCTCCGAC
GACGGGGAGAACGTAGACGACGGCATCCTGGAAGATTCAGCGGAAGTGAT
CGTCGGCGCGGTGGAGAGTGTGGCGAACAACGAGATGGTCCAGAATGCCG
GGGAGCTGGTCGGGGATGCGGTGGGCGTCGCGCACGACGCTCTTCGAGAG
GGTGTCAAGACGGGGATGGAGGCCGTCCATGGAGCAGCCCGCGCCATGAA
CAAAGCATGCGGGGTTACCTCTCGAGGCATGCCTGACATCGAGGGCGTCG
AAGAACGTGCCGAGCGTTGCGCCGAGTCGATGGAAACCCAAGCCGAAGGG
CTTTCTGATTCTGCCGCGGAGGCCTTCGACCGGGCCCGGGAAAAAGCCCC
AGGCGTCCTCAGAGCTGTCGACCCTGACGGAACGCTGGAAGAAGCGGTCG
AAGAAGTGACCGAAGAAGTAGGGGAAGCCGTGATGGAAATCTTGGGGGGA
GAAGTCGCAGAAGAGGCGTTGGAGGCGGCAGCCGGAAGTATTCCCGTCGC
GGGCGCCCTAATCCCCTCGTACTACCTGGTCCACGGGGGTGTGAAGGCCG
CCGCCGGAGTAACCAGCCTGGCTGCGGCAGGCACGATGGCTTTGGTTGGA
GGGGTGTACGGCATCGCGGCCGCGCCGTTCGACGGTGGGGCATCCTGGGG
CAAGGTCGCGAACGCTTCGAGGGGGGCCTCTGTTTGGGGCGCGAGCATTG
GCGCAGAGGGCGGACTGATCGCCGCCAAGGGCGCGATGGGATTCGCGGAC
CAGGTA