mRNA_E-siliculosus-1a_F_contig1041.320.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1041.320.1 vs. uniprot
Match: D7G285_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G285_ECTSI) HSP 1 Score: 838 bits (2164), Expect = 8.910e-288 Identity = 681/780 (87.31%), Postives = 688/780 (88.21%), Query Frame = 3 Query: 195 MVNPAIDQSNQPPLPFPAPGGGGHSNGHHASGPSCSAITNGDAGLRMQGVTQTVATVAGDLEGLVHAWDKTRGAMDFTVDESLRTVAYSVAENRVHTDLRDRGIEIVDDGRVTEVKSWRHCDGSTTRSTSSPRRXXXXXSPPPSSLSRXXXXXXXXXXXXXXXXXXXXFSGGEIAMQEEEDEDGLQVTGFDLRAALKCESISETRGYLRVLYDLAAQQELMLDEMAREGMYAIELNDKLSLKLADKRKEIEVLKKAYFLAIETDPAVACDTSDNNNNGTAKITAATTDSPGAGAAESLPGAEPTLEAVSSGMTPXXXXXXXXXXXXXXXRREHSRAFSGMGIAAPGNGGAISPRGGMEXXXXXXXXXXXXXXXXXXXXXXXXXSSGNRSVRAELFPAPGAAEEGKSKKTTPEVSPRGGNANNGHAMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGGPGQGDGVVEDPLKAMMMXXXXXX-MKQSTETARRDDAAEDSRDSKNGINAPPALAPPPVLPHPGQAVSYRAVRKAPAGGVAPPPTAFGPFGXXXXXGVSAFGXXXXXXXXXXXXXXXXXXXXXGGDSGSSSSVDGRGSEGTDAAXXXXXXXXXXXXXXXXXXXXXXXTTFGSSVGSFTGSFGSGRXXXXXVDAGVAPAEAAAQQPPPPQMLPGVSCGGSDCSGAGVGGEXXXXXXXXXXXXXXXXXXXE-AAMMQGNGFPDGGAAAPGVGDESNGGGGQGFGGPSWAREEETNEFFAGV 2528
MVNPA+DQSNQPPLPFP H+NGHHASGPS SAITNGDAGLRM GV QTVATVAGDLEGLVHAWDKTRGAMDFTVDESLRTVAYSVAENRVHTDLRDRGIEIVDD R E KSWRH D S TRSTSS XXXXX PPPSSLSRXXXXXXXXXXXXXXXXXXX FSGGEIA EEEDEDGLQVTGFDLRAALK ESISETR +LRVLYDLAAQQELMLDEMAREGMYAIELNDKLSLKLADKRKE+EVLKKAYFLAIETDPA A DTSDNNNNG AKITAATTDSPGAGAAESLPGAEPTLEAVSSGMTPXXXXXXXXXXXXXXXRREHSRAFSGMGIAAPGNGGAISPRGG+ XXXXXXXXXXXXXXXXXXXXXXXXXSSGNRSVRAELFPAPGAA EGKSKKTTPEVSPRGGNANNGHAMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXX MKQ TETAR+DD EDS DSKNG NAPPALAPPPVLPHPGQAVSYRAVRKAPAGGVAPP TAFGPFG GVSAFG XXXXXXXXXXXXXXXXXXXGGDSGSSS VDGRGSEGTDAA XXXXXXXXXXXXXXXXXXX TTFGSSV RXXXX VDAGVAPAEAAAQQPPP QMLPGVSCGGSDCSGAGVGGE XXXXXXXXXXE AAMMQGNGFPDGG+AAPGVGDESNGGGGQGFGGPSWAREEETNEFFAGV
Sbjct: 1 MVNPAMDQSNQPPLPFPPXXXXXHTNGHHASGPSSSAITNGDAGLRM-GVNQTVATVAGDLEGLVHAWDKTRGAMDFTVDESLRTVAYSVAENRVHTDLRDRGIEIVDDSRAKESKSWRHSDRSRTRSTSSXXXXXXXXXPPPSSLSRXXXXXXXXXXXXXXXXXXX-FSGGEIARHEEEDEDGLQVTGFDLRAALKSESISETRRFLRVLYDLAAQQELMLDEMAREGMYAIELNDKLSLKLADKRKEVEVLKKAYFLAIETDPAAAWDTSDNNNNGAAKITAATTDSPGAGAAESLPGAEPTLEAVSSGMTPXXXXXXXXXXXXXXXRREHSRAFSGMGIAAPGNGGAISPRGGVXXXXXXXXXXXXXXXXXXXXXXXXXXSSGNRSVRAELFPAPGAAGEGKSKKTTPEVSPRGGNANNGHAMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQMKQRTETARQDDXXEDSGDSKNGTNAPPALAPPPVLPHPGQAVSYRAVRKAPAGGVAPPLTAFGPFGGG---GVSAFGGGXXXXXXXXXXXXXXXXXXXGGDSGSSS-VDGRGSEGTDAAAXXXXXXXXXXXXXXXXXXXSS-TTFGSSVXXXXXXXXXXRXXXXGVDAGVAPAEAAAQQPPP-QMLPGVSCGGSDCSGAGVGGEADPSGDGPAXXXXXXXXXXEEAAMMQGNGFPDGGSAAPGVGDESNGGGGQGFGGPSWAREEETNEFFAGV 772 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1041.320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1041.320.1 >prot_E-siliculosus-1a_F_contig1041.320.1 ID=prot_E-siliculosus-1a_F_contig1041.320.1|Name=mRNA_E-siliculosus-1a_F_contig1041.320.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=779bp MVNPAIDQSNQPPLPFPAPGGGGHSNGHHASGPSCSAITNGDAGLRMQGVback to top mRNA from alignment at E-siliculosus-1a_F_contig1041:21440..28394+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1041.320.1 ID=mRNA_E-siliculosus-1a_F_contig1041.320.1|Name=mRNA_E-siliculosus-1a_F_contig1041.320.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6955bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1041:21440..28394+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1041:21440..28394+ >mRNA_E-siliculosus-1a_F_contig1041.320.1 ID=mRNA_E-siliculosus-1a_F_contig1041.320.1|Name=mRNA_E-siliculosus-1a_F_contig1041.320.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4674bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1041:21440..28394+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |