prot_E-siliculosus-1a_F_contig1041.319.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1041.319.1
Unique Nameprot_E-siliculosus-1a_F_contig1041.319.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length184
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 4.750e-67
Identity = 111/120 (92.50%), Postives = 113/120 (94.17%), Query Frame = 0
Query:   64 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA 183
            MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRK +K      +FRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA
Sbjct:    1 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKR-----EFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA 115          
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: W7TQD2_9STRA (50s ribosomal protein l20 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQD2_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.190e-38
Identity = 88/161 (54.66%), Postives = 114/161 (70.81%), Query Frame = 0
Query:   18 SLVRPGCSSVARHRGGGLGAAVGGGSSSSRQGPCDALGQQQQQCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 178
            SLV    ++VA  R G    AV GG +S    PC   G   Q  R +A  NHRHKKI+K+AKGYRGR+ + F+IA+QRVEKALQ AYRDRK +K      +FR LWI+RI A V+Q+GM YS F+   R+A++ LNRKVLA++AV+EPYSF+AVVETV+++
Sbjct:    8 SLVLRRAATVATIRAGSQPDAVYGGIASI---PCLLKGPFLQPSRSLA--NHRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKR-----EFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQ 157          
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: A0A4P5SLS5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4P5SLS5_9PROT)

HSP 1 Score: 132 bits (333), Expect = 9.130e-37
Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 0
Query:   70 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 176
            RHKKILKLAKGYRGR+K+ F++AI++VEKAL+ AYRDRKARK      DFR LWI+RINAGVR+HGM YS F+N  + A ++L+RKVLA++AV EP +F  +VE  K
Sbjct:   13 RHKKILKLAKGYRGRAKNCFRVAIEKVEKALRYAYRDRKARKR-----DFRSLWIQRINAGVREHGMIYSKFINGLKLAKIDLDRKVLADLAVREPETFAKIVEKAK 114          
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: K2EJ18_9BACT (50S ribosomal protein L20 n=3 Tax=Bacteria TaxID=2 RepID=K2EJ18_9BACT)

HSP 1 Score: 132 bits (332), Expect = 1.290e-36
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 0
Query:   70 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVV 172
            RHKK+LKLAKGYRGRSKS ++IA+QRVEKALQ AYRDR+ RK      DFR LWI+RINAG R+HGM YS FVN   +A +E++RKVLA++AV EP +F+ +V
Sbjct:   13 RHKKVLKLAKGYRGRSKSCYRIALQRVEKALQYAYRDRRTRKR-----DFRALWIQRINAGAREHGMTYSKFVNGLTRAGIEIDRKVLADLAVHEPIAFKEIV 110          
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: A0A2S6SQA5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin1 TaxID=2013088 RepID=A0A2S6SQA5_9PROT)

HSP 1 Score: 132 bits (332), Expect = 1.370e-36
Identity = 62/107 (57.94%), Postives = 89/107 (83.18%), Query Frame = 0
Query:   70 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 176
            RHKKILK+AKGYRGRSK+VF++AIQRVEKALQ AYRDR+ +K      +FR LWI+RINAG R+HGM YS F++  +KA++E++RK+L+++A+  P +F+++VE ++
Sbjct:   13 RHKKILKMAKGYRGRSKNVFRVAIQRVEKALQYAYRDRRTKKR-----NFRALWIQRINAGTREHGMSYSQFIHGIKKAEIEIDRKILSDIALNNPVTFKSIVEKIR 114          
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: A0A1M3GWJ7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium 41-28 TaxID=1895706 RepID=A0A1M3GWJ7_9PROT)

HSP 1 Score: 131 bits (330), Expect = 2.600e-36
Identity = 66/104 (63.46%), Postives = 85/104 (81.73%), Query Frame = 0
Query:   70 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVE 173
            RHKK+LKLAKGYRGRSK+ F+IAIQRVEKALQ AYRDR+ RK      DFR LWI+RINAG R+HG+ YS F+N   KA ++++RKVLA++AV EP +F+++V+
Sbjct:   13 RHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRKR-----DFRGLWIQRINAGTREHGLTYSKFINGLTKAGIDIDRKVLADLAVHEPAAFKSIVD 111          
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: A0A7S3GYL0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYL0_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.610e-36
Identity = 70/118 (59.32%), Postives = 87/118 (73.73%), Query Frame = 0
Query:   59 QQCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 176
            Q  RGMA  N RHKK++KLAKGYRGR+   F +AIQRV KA Q AYRDRK +K      +FR LWI+RINA  R +G+PYS+ +NK  K D+ LNRKVL+E+A+TEP SF++VVE  K
Sbjct:   40 QAVRGMA--NQRHKKMIKLAKGYRGRANRCFTVAIQRVTKARQYAYRDRKVKKR-----EFRALWIQRINAASRMYGLPYSILINKMVKTDIALNRKVLSELAITEPLSFKSVVEVAK 150          
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: A0A7S2W484_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W484_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.640e-36
Identity = 73/124 (58.87%), Postives = 94/124 (75.81%), Query Frame = 0
Query:   60 QCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKAR-KADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPK 182
            Q R MA+   +HK +LK+AKGYRGRSK+ F+ AI+RVEKALQ AYRDRK +K      +FR+LWI+R+NAGVRQHGM YS F+  A   AD+ LNR++LAE++  EP+SF+AVV+ VK K  PK
Sbjct:  111 QSRTMASK--KHKAVLKMAKGYRGRSKNTFRAAIRRVEKALQYAYRDRKVKKR-----NFRKLWIQRLNAGVRQHGMSYSRFIRAAPLDADIVLNRRMLAELSTNEPFSFKAVVDVVKMKQQPK 227          
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: A0A7X2KDB2_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2KDB2_9PROT)

HSP 1 Score: 130 bits (328), Expect = 5.220e-36
Identity = 67/108 (62.04%), Postives = 86/108 (79.63%), Query Frame = 0
Query:   70 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKA 177
            RHKK+LKLAKGYRGR+ + F+IA+++VEK LQ AYRDR+A+K       FR+LWI RINAGVRQHGM YS F+N  + A +EL+RKVLA+MA  EP SF+A+V+T +A
Sbjct:   13 RHKKVLKLAKGYRGRNSTNFRIALEKVEKGLQYAYRDRRAKKRT-----FRQLWITRINAGVRQHGMTYSQFMNGMKLAGIELDRKVLADMAALEPESFKALVDTARA 115          
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: A0A2A5BDS7_9RICK (50S ribosomal protein L20 n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2A5BDS7_9RICK)

HSP 1 Score: 130 bits (327), Expect = 6.960e-36
Identity = 68/110 (61.82%), Postives = 86/110 (78.18%), Query Frame = 0
Query:   67 NNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 176
            + +RHKKI+K+AKGYRGR+K+ FKIAI++VEKALQ AYRDR+ RK      DFR LWI+RINA VRQH M YS F+   +KA +E++RK+LAEMAV +P SF  +VE VK
Sbjct:   10 SKNRHKKIIKMAKGYRGRAKNCFKIAIEKVEKALQYAYRDRRNRKR-----DFRGLWIQRINAAVRQHDMIYSTFMGGMKKAGIEVDRKMLAEMAVNDPASFTHIVEQVK 114          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G284_ECTSI4.750e-6792.5050S ribosomal protein L20 n=1 Tax=Ectocarpus silic... [more]
W7TQD2_9STRA3.190e-3854.6650s ribosomal protein l20 n=1 Tax=Nannochloropsis ... [more]
A0A4P5SLS5_9PROT9.130e-3763.5550S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
K2EJ18_9BACT1.290e-3665.0550S ribosomal protein L20 n=3 Tax=Bacteria TaxID=2... [more]
A0A2S6SQA5_9PROT1.370e-3657.9450S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A1M3GWJ7_9PROT2.600e-3663.4650S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A7S3GYL0_9STRA2.610e-3659.32Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2W484_9STRA3.640e-3658.87Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7X2KDB2_9PROT5.220e-3662.0450S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A2A5BDS7_9RICK6.960e-3661.8250S ribosomal protein L20 n=1 Tax=Rickettsiales ba... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 69..98
score: 43.54
coord: 137..163
score: 41.64
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 65..170
e-value: 2.6E-38
score: 130.4
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 65..176
e-value: 2.8E-39
score: 131.9
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 66..178
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 58..177
score: 23.02
NoneNo IPR availableGENE3D1.10.720.90coord: 61..112
e-value: 3.6E-17
score: 64.2
NoneNo IPR availablePRODOMPD002389coord: 77..134
e-value: 5.0E-14
score: 187.0
IPR035566Ribosomal protein L20, C-terminalGENE3D1.10.1900.20coord: 119..179
e-value: 1.5E-26
score: 93.8
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 67..177

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1041contigE-siliculosus-1a_F_contig1041:18779..21241 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1041.319.1mRNA_E-siliculosus-1a_F_contig1041.319.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1041 18728..21304 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1041.319.1 ID=prot_E-siliculosus-1a_F_contig1041.319.1|Name=mRNA_E-siliculosus-1a_F_contig1041.319.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=184bp
MSWSTVLSRVRPQALWSSLVRPGCSSVARHRGGGLGAAVGGGSSSSRQGP
CDALGQQQQQCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKAL
QQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADV
ELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035566Ribosomal_protein_L20_C
IPR005813Ribosomal_L20