mRNA_E-siliculosus-1a_F_contig1041.319.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI) HSP 1 Score: 208 bits (530), Expect = 3.920e-66 Identity = 111/120 (92.50%), Postives = 113/120 (94.17%), Query Frame = 1 Query: 253 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA 612
MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRK +K +FRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA
Sbjct: 1 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKR-----EFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA 115
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: W7TQD2_9STRA (50s ribosomal protein l20 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQD2_9STRA) HSP 1 Score: 137 bits (345), Expect = 1.590e-37 Identity = 88/161 (54.66%), Postives = 114/161 (70.81%), Query Frame = 1 Query: 115 SLVRPGCSSVARHRGGGLGAAVGGGSSSSRQGPCDALGQQQQQCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 597
SLV ++VA R G AV GG +S PC G Q R +A NHRHKKI+K+AKGYRGR+ + F+IA+QRVEKALQ AYRDRK +K +FR LWI+RI A V+Q+GM YS F+ R+A++ LNRKVLA++AV+EPYSF+AVVETV+++
Sbjct: 8 SLVLRRAATVATIRAGSQPDAVYGGIASI---PCLLKGPFLQPSRSLA--NHRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKR-----EFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQ 157
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: A0A4P5SLS5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4P5SLS5_9PROT) HSP 1 Score: 132 bits (333), Expect = 3.160e-36 Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 1 Query: 271 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 591
RHKKILKLAKGYRGR+K+ F++AI++VEKAL+ AYRDRKARK DFR LWI+RINAGVR+HGM YS F+N + A ++L+RKVLA++AV EP +F +VE K
Sbjct: 13 RHKKILKLAKGYRGRAKNCFRVAIEKVEKALRYAYRDRKARKR-----DFRSLWIQRINAGVREHGMIYSKFINGLKLAKIDLDRKVLADLAVREPETFAKIVEKAK 114
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: K2EJ18_9BACT (50S ribosomal protein L20 n=3 Tax=Bacteria TaxID=2 RepID=K2EJ18_9BACT) HSP 1 Score: 132 bits (332), Expect = 4.470e-36 Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 1 Query: 271 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVV 579
RHKK+LKLAKGYRGRSKS ++IA+QRVEKALQ AYRDR+ RK DFR LWI+RINAG R+HGM YS FVN +A +E++RKVLA++AV EP +F+ +V
Sbjct: 13 RHKKVLKLAKGYRGRSKSCYRIALQRVEKALQYAYRDRRTRKR-----DFRALWIQRINAGAREHGMTYSKFVNGLTRAGIEIDRKVLADLAVHEPIAFKEIV 110
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: A0A2S6SQA5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin1 TaxID=2013088 RepID=A0A2S6SQA5_9PROT) HSP 1 Score: 132 bits (332), Expect = 4.740e-36 Identity = 62/107 (57.94%), Postives = 89/107 (83.18%), Query Frame = 1 Query: 271 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 591
RHKKILK+AKGYRGRSK+VF++AIQRVEKALQ AYRDR+ +K +FR LWI+RINAG R+HGM YS F++ +KA++E++RK+L+++A+ P +F+++VE ++
Sbjct: 13 RHKKILKMAKGYRGRSKNVFRVAIQRVEKALQYAYRDRRTKKR-----NFRALWIQRINAGTREHGMSYSQFIHGIKKAEIEIDRKILSDIALNNPVTFKSIVEKIR 114
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: A0A1M3GWJ7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium 41-28 TaxID=1895706 RepID=A0A1M3GWJ7_9PROT) HSP 1 Score: 131 bits (330), Expect = 8.940e-36 Identity = 66/104 (63.46%), Postives = 85/104 (81.73%), Query Frame = 1 Query: 271 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVE 582
RHKK+LKLAKGYRGRSK+ F+IAIQRVEKALQ AYRDR+ RK DFR LWI+RINAG R+HG+ YS F+N KA ++++RKVLA++AV EP +F+++V+
Sbjct: 13 RHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRKR-----DFRGLWIQRINAGTREHGLTYSKFINGLTKAGIDIDRKVLADLAVHEPAAFKSIVD 111
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: A0A7S3GYL0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYL0_9STRA) HSP 1 Score: 132 bits (333), Expect = 9.020e-36 Identity = 70/118 (59.32%), Postives = 87/118 (73.73%), Query Frame = 1 Query: 238 QQCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 591
Q RGMA N RHKK++KLAKGYRGR+ F +AIQRV KA Q AYRDRK +K +FR LWI+RINA R +G+PYS+ +NK K D+ LNRKVL+E+A+TEP SF++VVE K
Sbjct: 40 QAVRGMA--NQRHKKMIKLAKGYRGRANRCFTVAIQRVTKARQYAYRDRKVKKR-----EFRALWIQRINAASRMYGLPYSILINKMVKTDIALNRKVLSELAITEPLSFKSVVEVAK 150
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: A0A2A5BDS7_9RICK (50S ribosomal protein L20 n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2A5BDS7_9RICK) HSP 1 Score: 130 bits (327), Expect = 2.380e-35 Identity = 68/110 (61.82%), Postives = 86/110 (78.18%), Query Frame = 1 Query: 262 NNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 591
+ +RHKKI+K+AKGYRGR+K+ FKIAI++VEKALQ AYRDR+ RK DFR LWI+RINA VRQH M YS F+ +KA +E++RK+LAEMAV +P SF +VE VK
Sbjct: 10 SKNRHKKIIKMAKGYRGRAKNCFKIAIEKVEKALQYAYRDRRNRKR-----DFRGLWIQRINAAVRQHDMIYSTFMGGMKKAGIEVDRKMLAEMAVNDPASFTHIVEQVK 114
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: A0A7S2W484_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W484_9STRA) HSP 1 Score: 134 bits (336), Expect = 2.520e-35 Identity = 73/124 (58.87%), Postives = 94/124 (75.81%), Query Frame = 1 Query: 241 QCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKAR-KADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPK 609
Q R MA+ +HK +LK+AKGYRGRSK+ F+ AI+RVEKALQ AYRDRK +K +FR+LWI+R+NAGVRQHGM YS F+ A AD+ LNR++LAE++ EP+SF+AVV+ VK K PK
Sbjct: 111 QSRTMASK--KHKAVLKMAKGYRGRSKNTFRAAIRRVEKALQYAYRDRKVKKR-----NFRKLWIQRLNAGVRQHGMSYSRFIRAAPLDADIVLNRRMLAELSTNEPFSFKAVVDVVKMKQQPK 227
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match: A0A7X2KDB2_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2KDB2_9PROT) HSP 1 Score: 130 bits (327), Expect = 2.530e-35 Identity = 67/108 (62.04%), Postives = 86/108 (79.63%), Query Frame = 1 Query: 271 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKA 594
RHKK+LKLAKGYRGR+ + F+IA+++VEK LQ AYRDR+A+K FR+LWI RINAGVRQHGM YS F+N + A +EL+RKVLA+MA EP SF+A+V+T +A
Sbjct: 13 RHKKVLKLAKGYRGRNSTNFRIALEKVEKGLQYAYRDRRAKKRT-----FRQLWITRINAGVRQHGMTYSQFMNGMKLAGIELDRKVLADMAALEPESFKALVDTARA 115 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1041.319.1 >prot_E-siliculosus-1a_F_contig1041.319.1 ID=prot_E-siliculosus-1a_F_contig1041.319.1|Name=mRNA_E-siliculosus-1a_F_contig1041.319.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=184bp MSWSTVLSRVRPQALWSSLVRPGCSSVARHRGGGLGAAVGGGSSSSRQGPback to top mRNA from alignment at E-siliculosus-1a_F_contig1041:18728..21304- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1041.319.1 ID=mRNA_E-siliculosus-1a_F_contig1041.319.1|Name=mRNA_E-siliculosus-1a_F_contig1041.319.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2577bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1041:18728..21304- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1041:18728..21304- >mRNA_E-siliculosus-1a_F_contig1041.319.1 ID=mRNA_E-siliculosus-1a_F_contig1041.319.1|Name=mRNA_E-siliculosus-1a_F_contig1041.319.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1104bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1041:18728..21304- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |