mRNA_E-siliculosus-1a_F_contig1041.318.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1041.318.1 vs. uniprot
Match: D7G283_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G283_ECTSI) HSP 1 Score: 1030 bits (2662), Expect = 0.000e+0 Identity = 525/558 (94.09%), Postives = 536/558 (96.06%), Query Frame = 1 Query: 1 MFRDPTEPGSGTRRFSSAVYSSRLAGATRTFRDPIVSHGLETAGTVGGRSSTGGRGGSRSDMDRMIPEGASDSSPATTAGGNQTSTANGSSRRASLFEWLVAKKGTGGA-ELSEYMSAIECGSDEQQDAIHDEEQDLGRGFSDYEASMDMNSLRRQAAVVEV-AEEGATTTIPSIDNISSDPPLTAEALEHHTRTHSSGENNRSEGSASAALNGNDTRDILAASAGRSLPRPRSTSKSSRTGGDDEAGDAVLPGFHQSHDETQEELTIDEPTTLAAADIKDIYADDVTGGESRRVTFLSGTMGLTVDISDPMQPQPPDEFDREHRQQHKKHDDDDQWPASPCSGVILNTSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSRKASVLYWRYKTGPFGRGAAAGANQGLGAEDRRVIPLSSLANIGPAELYRQGAPSSRRNLLSWLSIPSSLRRANEDAPVGYGKIQTDKDLDGVDKGTAGLVEAVPVLALSYWVEGEPRWVGDQPKRLLVRPDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR 1668
MFRDPTEPGSGTRRFSSAVYSSRLAGATRTFRDPI+SHGLETAGT GGRSSTG RGGSRSDMDRMIPEGASDSSPATTAGGNQTSTAN SSRRASLFEWLVAKKGTGG E S+YMSA+ECGSDEQQDA+H+EEQD GRGFSDYE+SMDMNSLRRQAAVVEV AEEGATTTIPSIDNISSDPPLTAEALEHHTRTHSSG++NRSEGSASAALNGNDT+ ILAASAGRSLPRPRSTSKSS TG DDEAGDAVLP FHQSHDE QEELTIDEPTT AA DI DIYADDVTGGESRRVTFLSGTMGLTVDISDPMQPQP DEFDREHRQQH KHDD DQWPASPCSGVIL+TSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSRKASVLYWRYKTGPFGRGAAAGANQGLGAEDRRVIPLSSLANIGPAELYRQG PSSRRNLLSWLSIPSSLRRA+EDAPVGYGKIQ DKDLD VDKGTAGLVEAVPVLALSYWVEGEPRWVGDQPKRLLVRPDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR
Sbjct: 1 MFRDPTEPGSGTRRFSSAVYSSRLAGATRTFRDPIISHGLETAGTAGGRSSTGRRGGSRSDMDRMIPEGASDSSPATTAGGNQTSTANSSSRRASLFEWLVAKKGTGGGGEFSQYMSAVECGSDEQQDAVHNEEQDFGRGFSDYESSMDMNSLRRQAAVVEVLAEEGATTTIPSIDNISSDPPLTAEALEHHTRTHSSGKSNRSEGSASAALNGNDTKHILAASAGRSLPRPRSTSKSSHTGSDDEAGDAVLPEFHQSHDEAQEELTIDEPTTPAAVDINDIYADDVTGGESRRVTFLSGTMGLTVDISDPMQPQPSDEFDREHRQQHTKHDDYDQWPASPCSGVILDTSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSRKASVLYWRYKTGPFGRGAAAGANQGLGAEDRRVIPLSSLANIGPAELYRQGPPSSRRNLLSWLSIPSSLRRASEDAPVGYGKIQKDKDLDSVDKGTAGLVEAVPVLALSYWVEGEPRWVGDQPKRLLVRPDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR 558
BLAST of mRNA_E-siliculosus-1a_F_contig1041.318.1 vs. uniprot
Match: A0A6H5L7W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W7_9PHAE) HSP 1 Score: 871 bits (2250), Expect = 1.220e-314 Identity = 459/582 (78.87%), Postives = 477/582 (81.96%), Query Frame = 1 Query: 10 DPTEPGSGTRRFSSAVYSSRLAGATRTFRDP-----------------------------IVSHGLETAGTVGGRSSTGGRGGSRSDMDRMIPEGASDSSPATTAGGNQTSTANGSSRRASLFEWLVAKKGTGGAELSEYMSAIECGSDEQQDAIHDEEQDLGRGFSDYEASMDMNSLRRQAAVVEVAEEGATTTIPSIDNISSDPPLTAEALEHHTRTHSSGENNRSEGSASAALNGNDTRDILAASAGRSLPRPRSTSKSSRTGGDDEAGDAVLPGFHQSHDETQEELTIDEPTTLAAADIKDIYADDVTGGESRRVTFLSGTMGLTVDISDPMQPQPPDEFDREHRQQHKKHDDDDQWPASPCSGVILNTSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSRKASVLYWRYKTGPFGRGAAAGANQGLGAEDRRVIPLSSLANIGPAELYRQGAPSSRRNLLSWLSIPSSLRRANEDAPVGYGKIQTDKDLDGVDKGTAGLVEAVPVLALSYWVEGEPRWVGDQPKRLLVRPDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR 1668
D T P RF + Y R +G TR FRDP IVSHGLETAGT GGRSSTG RGGSRSDMDRM +GASDSSP T+ GGNQ STA G SRRASLFEWLV KKGTGGAE SEY+SA+E GSDEQQDA+HDEEQDLGRGFSDYE+SM+MNSLRR++AVVEVAEEGAT TIPSIDNISSDPPLTAE LE HTRTHS G+NNRSE +SA LNGNDTRDIL ASAGRSLPRPR TS SSRTGGDDEAGDAVLP FHQSHDETQEE+TIDEPTT AAADI+DIYADDVT GESRRVTFLS TMGLTVDISDPMQP PASPCSGVIL+TSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSRKASVLYWRYKTGPFGR AAG NQGLGAEDRRVIPLSSLANIGPAELYR GAPSSRRNLLSWLSIPSSLRRAN D+PV Y KIQ DKDLDGVD G AGLVEAVPVLALSYWVEG+PRWVGD PKRLLV PDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR
Sbjct: 20 DTTTPVRRNSRFPFSTYPGRFSGTTRMFRDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVSHGLETAGTPGGRSSTGRRGGSRSDMDRMTSKGASDSSPTTSPGGNQASTAYGGSRRASLFEWLVPKKGTGGAEFSEYVSAVESGSDEQQDAVHDEEQDLGRGFSDYESSMNMNSLRRESAVVEVAEEGATATIPSIDNISSDPPLTAEVLEQHTRTHSGGKNNRSESRSSATLNGNDTRDILTASAGRSLPRPRGTSMSSRTGGDDEAGDAVLPEFHQSHDETQEEITIDEPTTPAAADIEDIYADDVTHGESRRVTFLSRTMGLTVDISDPMQPXXXXXXXXXXXXXXXXXXXXXXXPASPCSGVILDTSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSRKASVLYWRYKTGPFGRRTAAGGNQGLGAEDRRVIPLSSLANIGPAELYRHGAPSSRRNLLSWLSIPSSLRRANGDSPVDYRKIQKDKDLDGVDNGKAGLVEAVPVLALSYWVEGKPRWVGDHPKRLLVMPDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR 601 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1041.318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1041.318.1 >prot_E-siliculosus-1a_F_contig1041.318.1 ID=prot_E-siliculosus-1a_F_contig1041.318.1|Name=mRNA_E-siliculosus-1a_F_contig1041.318.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=557bp MFRDPTEPGSGTRRFSSAVYSSRLAGATRTFRDPIVSHGLETAGTVGGRSback to top mRNA from alignment at E-siliculosus-1a_F_contig1041:14674..17672+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1041.318.1 ID=mRNA_E-siliculosus-1a_F_contig1041.318.1|Name=mRNA_E-siliculosus-1a_F_contig1041.318.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2999bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1041:14674..17672+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1041:14674..17672+ >mRNA_E-siliculosus-1a_F_contig1041.318.1 ID=mRNA_E-siliculosus-1a_F_contig1041.318.1|Name=mRNA_E-siliculosus-1a_F_contig1041.318.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1041:14674..17672+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |