Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match:
A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)
HSP 1 Score: 116 bits (291), Expect = 6.320e-29
Identity = 51/60 (85.00%), Postives = 53/60 (88.33%), Query Frame = 3
Query: 6 LEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
LEGIDH+GE+CC LGCGQCGG GC TSGASNGLGAESCC EV DSGRYCDD NEAPCII
Sbjct: 746 LEGIDHKGEVCCPLGCGQCGGSGCSTSGASNGLGAESCCSSEVKDSGRYCDDANEAPCII 805
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match:
D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI)
HSP 1 Score: 114 bits (286), Expect = 2.540e-28
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
GLEGIDH+GE+CC L CGQCGG GC TSGASNGLGA+SCC E++DSGR+CDDTNEAPCII
Sbjct: 546 GLEGIDHKGEVCCPLRCGQCGGSGCSTSGASNGLGADSCCSSEINDSGRHCDDTNEAPCII 606
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match:
D7FN07_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN07_ECTSI)
HSP 1 Score: 99.4 bits (246), Expect = 6.070e-23
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 1
Query: 1 MASRASITEARSVVRLGVASAEVQDATLLALRTVLALSLAAHQRCTIAADTVTTLTRPRVSL 186
MASRAS TEARSVVR GVASAEVQDATLLALRTVLALSLAAHQRCTIAADTVTT TRPRVSL
Sbjct: 430 MASRASTTEARSVVRSGVASAEVQDATLLALRTVLALSLAAHQRCTIAADTVTTPTRPRVSL 491
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match:
A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE)
HSP 1 Score: 94.7 bits (234), Expect = 3.200e-21
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
G EGID G +CC +GCGQCGG GC T+G++NGLG+ESCC V G YCDDTNEAPCII
Sbjct: 576 GTEGIDGNGVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCII 636
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match:
A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)
HSP 1 Score: 94.0 bits (232), Expect = 3.620e-21
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
G+EGID G +CC LGCGQCGG GC TSGA+ GLGA+SCC + S YCD+TNEAPCII
Sbjct: 350 GVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCII 410
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match:
D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)
HSP 1 Score: 92.4 bits (228), Expect = 2.080e-20
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
G EGID G +CC +GCGQC G GC T+G++NGLG+ESCC V G YCDDTNEAPCII
Sbjct: 507 GTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCII 567
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match:
D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)
HSP 1 Score: 91.7 bits (226), Expect = 3.830e-20
Identity = 41/61 (67.21%), Postives = 46/61 (75.41%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
GLEGID G +CC L C QCGG GC TSG++ GLG+ESCC + SG YCDDTNEAPCII
Sbjct: 548 GLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCII 608
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match:
A0A6H5JZG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG5_9PHAE)
HSP 1 Score: 90.9 bits (224), Expect = 5.780e-20
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
GLEGID G +CCSL CGQCGG GC TSG++NGLG + CC + S YCD+TNEAPCII
Sbjct: 244 GLEGIDGSGGVCCSLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCII 304
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match:
D7FN04_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN04_ECTSI)
HSP 1 Score: 89.4 bits (220), Expect = 1.970e-19
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCI 182
G+EGID R +CC L CGQCGG GC TSGA+ GLGA+SCC V SG+YCDDT EAPCI
Sbjct: 320 GIEGIDGR-VVCCPLECGQCGGTGCSTSGAAYGLGADSCCREPVSSSGKYCDDTGEAPCI 378
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match:
D7FIC5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC5_ECTSI)
HSP 1 Score: 89.4 bits (220), Expect = 2.350e-19
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
GLEGID G +CC L CGQCGG GC TSG++NGL +SCC + S YCD+TNEAPCII
Sbjct: 451 GLEGIDGNGVVCCPLACGQCGGKGCYTSGSANGLSGDSCCGGGIKASDEYCDETNEAPCII 511
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 17
0 1 Expect = 6.32e-29 / Id = 85.00 Expect = 2.54e-28 / Id = 80.33 Expect = 6.07e-23 / Id = 95.16 Expect = 3.20e-21 / Id = 67.21 Expect = 3.62e-21 / Id = 67.21 Expect = 2.08e-20 / Id = 65.57 Expect = 3.83e-20 / Id = 67.21 Expect = 5.78e-20 / Id = 65.57 Expect = 1.97e-19 / Id = 68.33 Expect = 2.35e-19 / Id = 63.93 Sequence A0A6H5JYT7_9PHAE D7FIS5_ECTSI D7FN07_ECTSI A0A6H5JUS5_9PHAE A0A6H5JC43_9PHAE D7G651_ECTSI D7FQV4_ECTSI A0A6H5JZG5_9PHAE D7FN04_ECTSI D7FIC5_ECTSI Pages
back to top
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1040.316.1
>prot_E-siliculosus-1a_F_contig1040.316.1 ID=prot_E-siliculosus-1a_F_contig1040.316.1|Name=mRNA_E-siliculosus-1a_F_contig1040.316.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=63bp
MASRASITEARSVVRLGVASAEVQDATLLALRTVLALSLAAHQRCTIAAD back to top mRNA from alignment at E-siliculosus-1a_F_contig1040:36339..36527-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1040.316.1 ID=mRNA_E-siliculosus-1a_F_contig1040.316.1|Name=mRNA_E-siliculosus-1a_F_contig1040.316.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=189bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1040:36339..36527- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)ATGGCCTCGAGGGCATCGATCACAGAGGCGAGATCTGTTGTTCGCTTGGG
TGTGGCCAGTGCGGAGGTCCAGGATGCGACACTTCTGGCGCTTCGAACGG
TCTTGGCGCTGAGTCTTGCTGCCCACCAGAGGTGCACGATAGCGGCAGAT
ACTGTGACGACACTAACGAGGCCCCGTGTATCATTATAG back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1040:36339..36527-
>mRNA_E-siliculosus-1a_F_contig1040.316.1 ID=mRNA_E-siliculosus-1a_F_contig1040.316.1|Name=mRNA_E-siliculosus-1a_F_contig1040.316.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=378bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1040:36339..36527- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top