mRNA_E-siliculosus-1a_F_contig15424.3143.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15424.3143.1
Unique NamemRNA_E-siliculosus-1a_F_contig15424.3143.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15424.3143.1 vs. uniprot
Match: A0A5S3PYE9_9FLAO (RND family transporter n=1 Tax=Maribacter algarum TaxID=2578118 RepID=A0A5S3PYE9_9FLAO)

HSP 1 Score: 446 bits (1148), Expect = 1.460e-149
Identity = 247/272 (90.81%), Postives = 260/272 (95.59%), Query Frame = 1
Query:    1 PTSQENYFIMDFARKSSDNGNLLKSFVDSTGQTARITTFMKDVKTSRMEEIEARLQENIAKIFPAERFNVFMTGSALIFLKGTKYLVKNLILSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLLVTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELMANNWRIKVSVYAALKETGVSMFYTSIVLSFGFSVFVISNFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANKDTLKKPQIDILPRDEINNSQNE 816
            PTSQEN FIMD ARKSSD+G+LLKSFVDSTGQ ARITTFMKDV T RMEEIE RLQEN  K+FP+ER+NV+MTGSAL+FLKGTKYLVKNLILSLALAI LIALFMAYLFRSFRMIIISLIPNLLPL+VTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELMAN W+IKVSVYAALKETGVSMFYTSIVL FGFSVFVISNFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANK TLKKPQIDILP+DE+N+S+NE
Sbjct:  528 PTSQENTFIMDVARKSSDDGDLLKSFVDSTGQNARITTFMKDVTTERMEEIERRLQENADKLFPSERYNVYMTGSALLFLKGTKYLVKNLILSLALAILLIALFMAYLFRSFRMIIISLIPNLLPLVVTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELMANKWKIKVSVYAALKETGVSMFYTSIVLFFGFSVFVISNFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANKATLKKPQIDILPKDELNSSKNE 799          
BLAST of mRNA_E-siliculosus-1a_F_contig15424.3143.1 vs. uniprot
Match: A0A495EB92_9FLAO (Uncharacterized protein n=1 Tax=Maribacter vaceletii TaxID=1206816 RepID=A0A495EB92_9FLAO)

HSP 1 Score: 439 bits (1128), Expect = 1.280e-146
Identity = 241/268 (89.93%), Postives = 254/268 (94.78%), Query Frame = 1
Query:    1 PTSQENYFIMDFARKSSDNGNLLKSFVDSTGQTARITTFMKDVKTSRMEEIEARLQENIAKIFPAERFNVFMTGSALIFLKGTKYLVKNLILSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLLVTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELMANNWRIKVSVYAALKETGVSMFYTSIVLSFGFSVFVISNFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANKDTLKKPQIDILPRDEINN 804
            PT+QEN FIMD ARKS+DNGN+LKSFVDSTGQTARITTFMKDVKTSRMEEIEARL ENIAKIFP ERF V+MTGSALIFLKGTKYLVKNLI+SLALAI LIALFMAYLFRSFRMI+ISLIPNLLPL+VTAGVMGF GVPIKPSTILVFSIAFGISVDDTIHFLAKYRQEL+AN WRIK SVYAALKETGVSMFYTSIVL FGFSVF+ISNFGGTVALGALVSATLLFAMLANL+LLPSLLLSLE+SIANK  LKKPQIDILP++E  N
Sbjct:  528 PTTQENNFIMDVARKSADNGNMLKSFVDSTGQTARITTFMKDVKTSRMEEIEARLNENIAKIFPNERFTVYMTGSALIFLKGTKYLVKNLIMSLALAILLIALFMAYLFRSFRMIVISLIPNLLPLVVTAGVMGFAGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELIANRWRIKKSVYAALKETGVSMFYTSIVLFFGFSVFIISNFGGTVALGALVSATLLFAMLANLILLPSLLLSLERSIANKQVLKKPQIDILPKEEDRN 795          
BLAST of mRNA_E-siliculosus-1a_F_contig15424.3143.1 vs. uniprot
Match: A0A846R0V1_9FLAO (Uncharacterized protein n=1 Tax=Saonia flava TaxID=523696 RepID=A0A846R0V1_9FLAO)

HSP 1 Score: 434 bits (1116), Expect = 9.320e-145
Identity = 235/271 (86.72%), Postives = 253/271 (93.36%), Query Frame = 1
Query:    1 PTSQENYFIMDFARKSSDNGNLLKSFVDSTGQTARITTFMKDVKTSRMEEIEARLQENIAKIFPAERFNVFMTGSALIFLKGTKYLVKNLILSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLLVTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELMANNWRIKVSVYAALKETGVSMFYTSIVLSFGFSVFVISNFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANKDTLKKPQIDILPRDEINNSQN 813
            PT+QEN FIMD ARKSS+N NLL+SFVDS GQTARITT+MKDVKT RMEEIE RLQE+I KIFP+ER+N F+TG AL+FLKGTKYLVKNL+LSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPL++TAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQEL  N WR+KVSVY AL+ETGVSMFYTSIVL FGFSVF ISNFGGTVALG+LVSATLLFAMLANL+LLPSLLLSLEKSIANK  LKKPQIDILP+DE+NN QN
Sbjct:  528 PTTQENNFIMDVARKSSENSNLLESFVDSIGQTARITTYMKDVKTDRMEEIEKRLQESIDKIFPSERYNAFITGKALLFLKGTKYLVKNLVLSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLVITAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELTENKWRVKVSVYNALRETGVSMFYTSIVLFFGFSVFTISNFGGTVALGSLVSATLLFAMLANLILLPSLLLSLEKSIANKQVLKKPQIDILPKDELNNGQN 798          
BLAST of mRNA_E-siliculosus-1a_F_contig15424.3143.1 vs. uniprot
Match: A0A5B7SVE7_9FLAO (RND family transporter n=1 Tax=Aggregatimonas sangjinii TaxID=2583587 RepID=A0A5B7SVE7_9FLAO)

HSP 1 Score: 432 bits (1112), Expect = 3.330e-144
Identity = 235/264 (89.02%), Postives = 252/264 (95.45%), Query Frame = 1
Query:    1 PTSQENYFIMDFARKSSDNGNLLKSFVDSTGQTARITTFMKDVKTSRMEEIEARLQENIAKIFPAERFNVFMTGSALIFLKGTKYLVKNLILSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLLVTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELMANNWRIKVSVYAALKETGVSMFYTSIVLSFGFSVFVISNFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANKDTLKKPQIDILPRD 792
            PTSQEN FIMD A+ S+DNGN+L SFVDSTGQTARITTFM+DVKT RME IEA L ENI+KIFP+ERFNV+MTG ALIFLKGTKYLVKNLILSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPL+VTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQEL+ANNW+IKVSVYAAL+ETGVSMFYTSIVL FGFSVF+ISNFGGTVALGALVSATLLFAMLANL+LLPSLLLSLE++IANK  LK+PQIDILP+D
Sbjct:  528 PTSQENTFIMDVAKNSADNGNMLNSFVDSTGQTARITTFMQDVKTERMEAIEADLNENISKIFPSERFNVYMTGGALIFLKGTKYLVKNLILSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLVVTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELLANNWKIKVSVYAALRETGVSMFYTSIVLFFGFSVFIISNFGGTVALGALVSATLLFAMLANLILLPSLLLSLERNIANKKVLKEPQIDILPQD 791          
BLAST of mRNA_E-siliculosus-1a_F_contig15424.3143.1 vs. uniprot
Match: A0A7H9AUN5_9FLAO (MMPL family transporter n=1 Tax=Costertonia aggregata TaxID=343403 RepID=A0A7H9AUN5_9FLAO)

HSP 1 Score: 432 bits (1112), Expect = 3.710e-144
Identity = 238/267 (89.14%), Postives = 253/267 (94.76%), Query Frame = 1
Query:    1 PTSQENYFIMDFARKSSDNGNLLKSFVDSTGQTARITTFMKDVKTSRMEEIEARLQENIAKIFPAERFNVFMTGSALIFLKGTKYLVKNLILSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLLVTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELMANNWRIKVSVYAALKETGVSMFYTSIVLSFGFSVFVISNFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANKDTLKKPQIDILPRDEIN 801
            PTSQEN FIMD ARKSS N NLLKSFVDSTGQTARITT+M+DVKT RMEEIE+RL E I KIFP ERFNV+MTGSAL+FLKGTKYLVKNL+LSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPL+VTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQEL A+ WRI+ SVYAAL+ETGVSMFYTSIVL FGFSVFVISNFGGTVALGALVSATLLFAMLANL+LLPSLLLSLEKSIANK+TLKKPQIDILP++ +N
Sbjct:  528 PTSQENNFIMDVARKSSGNSNLLKSFVDSTGQTARITTYMQDVKTDRMEEIESRLLEQIHKIFPDERFNVYMTGSALLFLKGTKYLVKNLVLSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLVVTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELTASRWRIEKSVYAALRETGVSMFYTSIVLFFGFSVFVISNFGGTVALGALVSATLLFAMLANLILLPSLLLSLEKSIANKETLKKPQIDILPKETLN 794          
BLAST of mRNA_E-siliculosus-1a_F_contig15424.3143.1 vs. uniprot
Match: A0A524JDD0_9FLAO (RND family transporter (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A524JDD0_9FLAO)

HSP 1 Score: 418 bits (1074), Expect = 5.270e-144
Identity = 224/267 (83.90%), Postives = 250/267 (93.63%), Query Frame = 1
Query:    1 PTSQENYFIMDFARKSSDNGNLLKSFVDSTGQTARITTFMKDVKTSRMEEIEARLQENIAKIFPAERFNVFMTGSALIFLKGTKYLVKNLILSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLLVTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELMANNWRIKVSVYAALKETGVSMFYTSIVLSFGFSVFVISNFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANKDTLKKPQIDILPRDEIN 801
            PT+QEN FIMD ARKSS NGNLLK+FVDSTGQTARITT+M+DV T RME IE RL+ENI  IFPAER+ V++TGSAL+FLKGTKYLV NL++SLALAI LIA+FMAYLFRSF+MI+ISLIPNLLPL++TAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQEL+AN WRI  SVYAALKETGVSMFYTSIVL FGFSVF+IS+FGGTVALGALVSATL+FAMLANL+LLPSLLLSLE++IANK+ LKKPQIDILP++EIN
Sbjct:  111 PTTQENNFIMDVARKSSGNGNLLKNFVDSTGQTARITTYMRDVNTERMEAIEKRLEENINTIFPAERYTVYLTGSALLFLKGTKYLVTNLVMSLALAIALIAVFMAYLFRSFKMIVISLIPNLLPLVITAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELVANQWRINKSVYAALKETGVSMFYTSIVLFFGFSVFIISSFGGTVALGALVSATLMFAMLANLILLPSLLLSLERNIANKEVLKKPQIDILPKEEIN 377          
BLAST of mRNA_E-siliculosus-1a_F_contig15424.3143.1 vs. uniprot
Match: A0A3S9NT39_9FLAO (RND family transporter n=3 Tax=Maribacter TaxID=252356 RepID=A0A3S9NT39_9FLAO)

HSP 1 Score: 432 bits (1110), Expect = 6.470e-144
Identity = 236/265 (89.06%), Postives = 252/265 (95.09%), Query Frame = 1
Query:    1 PTSQENYFIMDFARKSSDNGNLLKSFVDSTGQTARITTFMKDVKTSRMEEIEARLQENIAKIFPAERFNVFMTGSALIFLKGTKYLVKNLILSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLLVTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELMANNWRIKVSVYAALKETGVSMFYTSIVLSFGFSVFVISNFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANKDTLKKPQIDILPRDE 795
            PTSQEN FIMD ARKSSDNGNLLKSFVDSTGQTAR+TTFM+DVKT RMEEIE RL ENIAKIFP ER+ V+MTGSAL+FLKGTKYLVKNLI+SLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLLVTAG+MGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQEL ++ W+I+ SVYAAL+ETGVSMFYTSIVL FGFSVFVISNFGGTVALG+LVSATLLFAMLANL+LLPSLLLSLEKSIANK+ LKKPQIDILP+ E
Sbjct:  528 PTSQENTFIMDVARKSSDNGNLLKSFVDSTGQTARMTTFMRDVKTDRMEEIEQRLLENIAKIFPKERYTVYMTGSALLFLKGTKYLVKNLIMSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLLVTAGIMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELTSSKWKIEKSVYAALRETGVSMFYTSIVLFFGFSVFVISNFGGTVALGSLVSATLLFAMLANLILLPSLLLSLEKSIANKEVLKKPQIDILPKGE 792          
BLAST of mRNA_E-siliculosus-1a_F_contig15424.3143.1 vs. uniprot
Match: A0A3B0T8U0_9ZZZZ (Exporter protein, RND family n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0T8U0_9ZZZZ)

HSP 1 Score: 431 bits (1108), Expect = 1.520e-143
Identity = 234/263 (88.97%), Postives = 249/263 (94.68%), Query Frame = 1
Query:    1 PTSQENYFIMDFARKSSDNGNLLKSFVDSTGQTARITTFMKDVKTSRMEEIEARLQENIAKIFPAERFNVFMTGSALIFLKGTKYLVKNLILSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLLVTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELMANNWRIKVSVYAALKETGVSMFYTSIVLSFGFSVFVISNFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANKDTLKKPQIDILPR 789
            PTSQEN FIMD ARKSS NGNLLK+FVDSTGQTARITTFMKDV T RMEEIEA+L ENI K+FP ER++VFMTGSAL+FLKGTKYLV NL+LSLALAIGLIALF+AYLFRS RMI+ISL+PNLLPLL+TAG+MGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELMAN WRIKVSVYAAL+ETGVSMFYTSIVL FGFSVF+ISNFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANK  LKKPQIDILP+
Sbjct:  528 PTSQENTFIMDVARKSSKNGNLLKNFVDSTGQTARITTFMKDVTTERMEEIEAKLNENIEKLFPEERYDVFMTGSALLFLKGTKYLVNNLVLSLALAIGLIALFIAYLFRSSRMIVISLVPNLLPLLITAGIMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELMANQWRIKVSVYAALRETGVSMFYTSIVLFFGFSVFIISNFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANKQVLKKPQIDILPK 790          
BLAST of mRNA_E-siliculosus-1a_F_contig15424.3143.1 vs. uniprot
Match: A0A1B7ZFD7_9FLAO (Transporter n=25 Tax=root TaxID=1 RepID=A0A1B7ZFD7_9FLAO)

HSP 1 Score: 430 bits (1106), Expect = 2.580e-143
Identity = 234/268 (87.31%), Postives = 254/268 (94.78%), Query Frame = 1
Query:    1 PTSQENYFIMDFARKSSDNGNLLKSFVDSTGQTARITTFMKDVKTSRMEEIEARLQENIAKIFPAERFNVFMTGSALIFLKGTKYLVKNLILSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLLVTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELMANNWRIKVSVYAALKETGVSMFYTSIVLSFGFSVFVISNFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANKDTLKKPQIDILPRDEINN 804
            PTSQEN FIMD ARKSS++ +LLK+FVDSTGQTARITTFM+DV TSRME+IE RLQE+I KIFP+ER+NV+MTGSAL+FLKGTKYLVKNLI+SLALAIGLIALFMAYLFRSFRMI+ISLIPNLLPL++TAG+MGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQEL ANNWRI+ SVY AL+ETGVSMFYTSIVL FGFSVFVISNFGGTVALG+LVSATLL AMLANL+LLPSLLLSLEKSIANK TLKKPQIDILP DE NN
Sbjct:  528 PTSQENTFIMDVARKSSNDSDLLKTFVDSTGQTARITTFMQDVNTSRMEQIEERLQEHITKIFPSERYNVYMTGSALLFLKGTKYLVKNLIMSLALAIGLIALFMAYLFRSFRMIVISLIPNLLPLVITAGIMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELTANNWRIEKSVYNALRETGVSMFYTSIVLFFGFSVFVISNFGGTVALGSLVSATLLLAMLANLILLPSLLLSLEKSIANKQTLKKPQIDILPHDENNN 795          
BLAST of mRNA_E-siliculosus-1a_F_contig15424.3143.1 vs. uniprot
Match: UPI0006457397 (efflux RND transporter permease subunit n=1 Tax=Cellulophaga sp. Hel_I_12 TaxID=1249972 RepID=UPI0006457397)

HSP 1 Score: 429 bits (1102), Expect = 1.030e-142
Identity = 233/265 (87.92%), Postives = 252/265 (95.09%), Query Frame = 1
Query:    1 PTSQENYFIMDFARKSSDNGNLLKSFVDSTGQTARITTFMKDVKTSRMEEIEARLQENIAKIFPAERFNVFMTGSALIFLKGTKYLVKNLILSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLLVTAGVMGFVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELMANNWRIKVSVYAALKETGVSMFYTSIVLSFGFSVFVISNFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANKDTLKKPQIDILPRDE 795
            PTSQEN FIMD ARKS+DNGNLLKSFVDSTGQTARITTFMKDVKT RME IEA+LQENI+KIFP++RFNV+MTGSALIFLKGTKYLV NLILSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPL++TAG+MG+VGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQEL AN WRIK SVYAAL+ETGVSMFYTSIVL FGFSVF IS+FGGTVALG LVSATLLFAML+NL+LLPSLLLSLE++IANK  LK+PQIDILP++E
Sbjct:  528 PTSQENTFIMDVARKSADNGNLLKSFVDSTGQTARITTFMKDVKTDRMEAIEAKLQENISKIFPSDRFNVYMTGSALIFLKGTKYLVNNLILSLALAIGLIALFMAYLFRSFRMIIISLIPNLLPLVITAGLMGYVGVPIKPSTILVFSIAFGISVDDTIHFLAKYRQELTANQWRIKKSVYAALRETGVSMFYTSIVLFFGFSVFAISSFGGTVALGTLVSATLLFAMLSNLILLPSLLLSLERNIANKKVLKEPQIDILPKNE 792          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15424.3143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S3PYE9_9FLAO1.460e-14990.81RND family transporter n=1 Tax=Maribacter algarum ... [more]
A0A495EB92_9FLAO1.280e-14689.93Uncharacterized protein n=1 Tax=Maribacter vacelet... [more]
A0A846R0V1_9FLAO9.320e-14586.72Uncharacterized protein n=1 Tax=Saonia flava TaxID... [more]
A0A5B7SVE7_9FLAO3.330e-14489.02RND family transporter n=1 Tax=Aggregatimonas sang... [more]
A0A7H9AUN5_9FLAO3.710e-14489.14MMPL family transporter n=1 Tax=Costertonia aggreg... [more]
A0A524JDD0_9FLAO5.270e-14483.90RND family transporter (Fragment) n=1 Tax=Flavobac... [more]
A0A3S9NT39_9FLAO6.470e-14489.06RND family transporter n=3 Tax=Maribacter TaxID=25... [more]
A0A3B0T8U0_9ZZZZ1.520e-14388.97Exporter protein, RND family n=1 Tax=hydrothermal ... [more]
A0A1B7ZFD7_9FLAO2.580e-14387.31Transporter n=25 Tax=root TaxID=1 RepID=A0A1B7ZFD7... [more]
UPI00064573971.030e-14287.92efflux RND transporter permease subunit n=1 Tax=Ce... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15424contigE-siliculosus-1a_F_contig15424:3..824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size795
Model size822
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000
Best eggNOG OGNA|NA|NA
Best tax levelMaribacter
COG Functional cat.S
EggNOG OGs1HYND@117743,2PHXS@252356,4NE0M@976,COG1033@1,COG1033@2
EggNOG free text desc.Sterol-sensing domain of SREBP cleavage-activation
KEGG koko:K07003
Seed eggNOG ortholog1249997.JHZW01000002_gene517
Seed ortholog evalue5.7e-117
Seed ortholog score427.2
Taxonomic scopeBacteria
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928051.8762665-UTR-E-siliculosus-1a_F_contig15424:2..291622928051.8762665-UTR-E-siliculosus-1a_F_contig15424:2..29Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15424 3..29 +
1696318788.4217174-UTR-E-siliculosus-1a_F_contig15424:2..291696318788.4217174-UTR-E-siliculosus-1a_F_contig15424:2..29Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15424 3..29 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928051.8872395-CDS-E-siliculosus-1a_F_contig15424:29..8241622928051.8872395-CDS-E-siliculosus-1a_F_contig15424:29..824Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15424 30..824 +
1696318788.4351826-CDS-E-siliculosus-1a_F_contig15424:29..8241696318788.4351826-CDS-E-siliculosus-1a_F_contig15424:29..824Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15424 30..824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15424.3143.1prot_E-siliculosus-1a_F_contig15424.3143.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15424 30..824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15424.3143.1

>prot_E-siliculosus-1a_F_contig15424.3143.1 ID=prot_E-siliculosus-1a_F_contig15424.3143.1|Name=mRNA_E-siliculosus-1a_F_contig15424.3143.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=265bp
MDFARKSSDNGNLLKSFVDSTGQTARITTFMKDVKTSRMEEIEARLQENI
AKIFPAERFNVFMTGSALIFLKGTKYLVKNLILSLALAIGLIALFMAYLF
RSFRMIIISLIPNLLPLLVTAGVMGFVGVPIKPSTILVFSIAFGISVDDT
IHFLAKYRQELMANNWRIKVSVYAALKETGVSMFYTSIVLSFGFSVFVIS
NFGGTVALGALVSATLLFAMLANLVLLPSLLLSLEKSIANKDTLKKPQID
ILPRDEINNSQNES*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig15424:3..824+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15424.3143.1 ID=mRNA_E-siliculosus-1a_F_contig15424.3143.1|Name=mRNA_E-siliculosus-1a_F_contig15424.3143.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=822bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15424:3..824+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCAACTTCGCAGGAAAATTATTTTATTATGGACTTTGCTAGGAAATCTTC TGACAATGGCAATCTCTTAAAAAGCTTTGTGGATAGTACCGGTCAGACAG CACGTATCACTACATTTATGAAAGACGTGAAAACAAGTCGCATGGAAGAG ATAGAAGCGCGACTTCAAGAAAATATTGCCAAAATTTTTCCGGCAGAACG TTTTAATGTTTTTATGACCGGTAGTGCTTTGATATTTTTAAAGGGCACCA AGTATTTGGTAAAAAACCTGATTCTTTCTCTAGCATTGGCGATAGGATTG ATTGCCTTATTCATGGCATATTTATTCCGTTCGTTTCGAATGATTATTAT TTCTCTAATTCCTAATTTATTACCCCTCTTAGTAACCGCTGGAGTTATGG GTTTTGTAGGGGTACCTATCAAACCATCAACCATTTTAGTATTCAGTATT GCTTTTGGTATTTCTGTAGATGACACGATACACTTTTTAGCAAAGTACCG GCAAGAACTAATGGCTAATAACTGGAGAATTAAAGTGTCGGTATATGCCG CATTAAAGGAAACCGGAGTAAGCATGTTCTATACCTCTATCGTCTTGTCC TTTGGATTTTCCGTTTTTGTAATCTCAAATTTTGGAGGAACCGTAGCGCT TGGTGCATTAGTATCAGCAACCCTACTTTTTGCGATGCTGGCAAATTTGG TACTTCTACCTTCGCTACTGCTGTCCTTAGAAAAAAGTATTGCGAACAAA GACACCTTGAAAAAACCTCAGATTGATATTCTTCCTAGAGATGAAATCAA CAATTCTCAAAACGAGAGTTAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15424:3..824+

>mRNA_E-siliculosus-1a_F_contig15424.3143.1 ID=mRNA_E-siliculosus-1a_F_contig15424.3143.1|Name=mRNA_E-siliculosus-1a_F_contig15424.3143.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1590bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15424:3..824+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACTTTGCTAGGAAATCTTCTGACAATGGCAATCTCTTAAAAAGCTT
TGTGGATAGTACCGGTCAGACAGCACGTATCACTACATTTATGAAAGACG
TGAAAACAAGTCGCATGGAAGAGATAGAAGCGCGACTTCAAGAAAATATT
GCCAAAATTTTTCCGGCAGAACGTTTTAATGTTTTTATGACCGGTAGTGC
TTTGATATTTTTAAAGGGCACCAAGTATTTGGTAAAAAACCTGATTCTTT
CTCTAGCATTGGCGATAGGATTGATTGCCTTATTCATGGCATATTTATTC
CGTTCGTTTCGAATGATTATTATTTCTCTAATTCCTAATTTATTACCCCT
CTTAGTAACCGCTGGAGTTATGGGTTTTGTAGGGGTACCTATCAAACCAT
CAACCATTTTAGTATTCAGTATTGCTTTTGGTATTTCTGTAGATGACACG
ATACACTTTTTAGCAAAGTACCGGCAAGAACTAATGGCTAATAACTGGAG
AATTAAAGTGTCGGTATATGCCGCATTAAAGGAAACCGGAGTAAGCATGT
TCTATACCTCTATCGTCTTGTCCTTTGGATTTTCCGTTTTTGTAATCTCA
AATTTTGGAGGAACCGTAGCGCTTGGTGCATTAGTATCAGCAACCCTACT
TTTTGCGATGCTGGCAAATTTGGTACTTCTACCTTCGCTACTGCTGTCCT
TAGAAAAAAGTATTGCGAACAAAGACACCTTGAAAAAACCTCAGATTGAT
ATTCTTCCTAGAGATGAAATCAACAATTCTCAAAACGAGAGTTAAATGGA
CTTTGCTAGGAAATCTTCTGACAATGGCAATCTCTTAAAAAGCTTTGTGG
ATAGTACCGGTCAGACAGCACGTATCACTACATTTATGAAAGACGTGAAA
ACAAGTCGCATGGAAGAGATAGAAGCGCGACTTCAAGAAAATATTGCCAA
AATTTTTCCGGCAGAACGTTTTAATGTTTTTATGACCGGTAGTGCTTTGA
TATTTTTAAAGGGCACCAAGTATTTGGTAAAAAACCTGATTCTTTCTCTA
GCATTGGCGATAGGATTGATTGCCTTATTCATGGCATATTTATTCCGTTC
GTTTCGAATGATTATTATTTCTCTAATTCCTAATTTATTACCCCTCTTAG
TAACCGCTGGAGTTATGGGTTTTGTAGGGGTACCTATCAAACCATCAACC
ATTTTAGTATTCAGTATTGCTTTTGGTATTTCTGTAGATGACACGATACA
CTTTTTAGCAAAGTACCGGCAAGAACTAATGGCTAATAACTGGAGAATTA
AAGTGTCGGTATATGCCGCATTAAAGGAAACCGGAGTAAGCATGTTCTAT
ACCTCTATCGTCTTGTCCTTTGGATTTTCCGTTTTTGTAATCTCAAATTT
TGGAGGAACCGTAGCGCTTGGTGCATTAGTATCAGCAACCCTACTTTTTG
CGATGCTGGCAAATTTGGTACTTCTACCTTCGCTACTGCTGTCCTTAGAA
AAAAGTATTGCGAACAAAGACACCTTGAAAAAACCTCAGATTGATATTCT
TCCTAGAGATGAAATCAACAATTCTCAAAACGAGAGTTAA
back to top