prot_E-siliculosus-1a_F_contig104.313.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig104.313.1
Unique Nameprot_E-siliculosus-1a_F_contig104.313.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length136
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig104.313.1 vs. uniprot
Match: D7FVJ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVJ0_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 3.380e-93
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 0 
Query:    1 MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVGFAGVTGWFGLVGGFAFVTGTTYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMGHVLLNIA 135
            MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVG AGVTGWFGLVGGFAFVTG TYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGM HVLLN+A
Sbjct:    1 MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVGVAGVTGWFGLVGGFAFVTGATYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMDHVLLNVA 135
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BLAST of mRNA_E-siliculosus-1a_F_contig104.313.1 vs. uniprot
Match: A0A6H5JT26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT26_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.200e-31
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 0 
Query:   77 FAFVTGTTYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMGHVLLNIA 135
            FAFVTG TYLYYARF+EADELSYGDQGLKWEGLLPSLTVFLLMWILSF+ MGHVLLNIA
Sbjct:   17 FAFVTGATYLYYARFLEADELSYGDQGLKWEGLLPSLTVFLLMWILSFHSMGHVLLNIA 75
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BLAST of mRNA_E-siliculosus-1a_F_contig104.313.1 vs. uniprot
Match: A0A5B6UL68_9ROSI (Rab5-interacting n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6UL68_9ROSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.590e-6
Identity = 42/120 (35.00%), Postives = 57/120 (47.50%), Query Frame = 0 
Query:   24 KWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVGFAGVTGWFGLVGGFAFVTGTT-----------------YLYYARFVEADELSYGDQG-LKWEGLLPSLTVFLLMWILSFN 125
            K++K L   A WDKD   D    +HW RQ +A   G+  G   V G     G + F+T TT                 Y YYA  ++ DE  +G    L  EGL+ S+T+FLL WIL ++
Sbjct:   25 KFAKLLDPEASWDKDQLGDV---LHWIRQVVALFYGLLWGAIPVVG-----GIWIFITVTTQAKDNYTGFSGHNTGIIYGYYAMTLKIDEEEFGGHAALLQEGLIASITLFLLAWILVYS 136
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig104.313.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVJ0_ECTSI3.380e-9397.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JT26_9PHAE2.200e-3193.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5B6UL68_9ROSI2.590e-635.00Rab5-interacting n=1 Tax=Gossypium australe TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029008Rab5-interacting protein familyPFAMPF07019Rab5ipcoord: 47..124
e-value: 1.4E-10
score: 41.6
IPR010742Rab5-interacting proteinPANTHERPTHR12906PROTEIN C20ORF24 RAB5-INTERACTING PROTEINcoord: 19..125
NoneNo IPR availablePANTHERPTHR12906:SF0PROTEIN TGIF2-C20ORF24coord: 19..125
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..88
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 89..107
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 133..135
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 108..132
NoneNo IPR availableTMHMMTMhelixcoord: 57..79
NoneNo IPR availableTMHMMTMhelixcoord: 110..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig104contigE-siliculosus-1a_F_contig104:72830..77320 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig104.313.1mRNA_E-siliculosus-1a_F_contig104.313.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig104 72753..78209 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig104.313.1 ID=prot_E-siliculosus-1a_F_contig104.313.1|Name=mRNA_E-siliculosus-1a_F_contig104.313.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=136bp
MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWF
RQFMAAVAGICVGFAGVTGWFGLVGGFAFVTGTTYLYYARFVEADELSYG
DQGLKWEGLLPSLTVFLLMWILSFNGMGHVLLNIA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010742Rab5ip
IPR029008Rab5IP_fam