mRNA_E-siliculosus-1a_F_contig104.311.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig104.311.1
Unique NamemRNA_E-siliculosus-1a_F_contig104.311.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig104.311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig104contigE-siliculosus-1a_F_contig104:60795..61618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size204
Model size204
Exons2
Ec32 orthologEc-05_006080.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927543.335516-CDS-E-siliculosus-1a_F_contig104:60794..608751622927543.335516-CDS-E-siliculosus-1a_F_contig104:60794..60875Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig104 60795..60875 +
1696318576.9723625-CDS-E-siliculosus-1a_F_contig104:60794..608751696318576.9723625-CDS-E-siliculosus-1a_F_contig104:60794..60875Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig104 60795..60875 +
1622927543.3474607-CDS-E-siliculosus-1a_F_contig104:61495..616181622927543.3474607-CDS-E-siliculosus-1a_F_contig104:61495..61618Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig104 61496..61618 +
1696318576.9813154-CDS-E-siliculosus-1a_F_contig104:61495..616181696318576.9813154-CDS-E-siliculosus-1a_F_contig104:61495..61618Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig104 61496..61618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig104.311.1prot_E-siliculosus-1a_F_contig104.311.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig104 60795..61618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig104.311.1

>prot_E-siliculosus-1a_F_contig104.311.1 ID=prot_E-siliculosus-1a_F_contig104.311.1|Name=mRNA_E-siliculosus-1a_F_contig104.311.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=68bp
MLCHNVSQVCLPCHFFGYVPPSKEVAEIIGGKRSVVLPEPTLSERIGTAK
ATTTKVGGGRALALATT*
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mRNA from alignment at E-siliculosus-1a_F_contig104:60795..61618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig104.311.1 ID=mRNA_E-siliculosus-1a_F_contig104.311.1|Name=mRNA_E-siliculosus-1a_F_contig104.311.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=824bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig104:60795..61618+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGTGCCATAACGTTTCACAGGTGTGCCTGCCTTGCCACTTCTTCGG
GTATGTTCCCCCCTCAAAGGAAGTCGCAGAGGTGAGCAATGCGTGCACTT
CGCACCGCCTGCTTCACGAGGTATTGCCACAAAACGTCTTTTAACAAATC
GCTTGGTGACGACGGCGTAGCGTGGTTGGTTGGTTAGTTGGTTGTGGTTG
TGGTTGTGGTGGTTGCTTTTGTCATTGTGTTGTTTGCACACAAAACTTCG
TGTTCGGGTGTTTTCCAAGTCCATCTCTTCCCTGCTCTTCGATGCAACTA
TTCGATCCCCGCTTTTTCAAGCTATCGCAGCCCTAAACAAGGTCGAAGAC
CAATAGGAACGCATTCCCACTGCTCGCGAAGAATTCAGAGCTGCGTGATT
CATCGTTGCATCATGTTGCTACAGAGGCCAGCAGAGGTACCACTGACTGG
TAAACTCAACGATGGCCTAGTCGGGAACAAGTGGCGTGATTCGAAAATTT
CTAAGAAAAAGTGATCACATTGAAACTATGGTTCCGGCCCGATGTTGAAA
ACAGTTTGGCAGGATTCTGATGTTTCGCCGTCAGGGTCGCCAGATAATAT
GTACGTATCATGCATCCCTACATAGCTCTTTCCGACCAACGCGATTCGGG
AGTGACAGAGACGGAACTTACACGCAACACGTCGCCTTACCACCTGCTCA
GATTATTGGAGGCAAGCGATCGGTGGTGTTGCCGGAACCAACTCTTTCGG
AGCGGATAGGGACGGCAAAGGCTACCACAACCAAGGTTGGTGGCGGCAGA
GCCTTAGCACTGGCCACCACGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig104:60795..61618+

>mRNA_E-siliculosus-1a_F_contig104.311.1 ID=mRNA_E-siliculosus-1a_F_contig104.311.1|Name=mRNA_E-siliculosus-1a_F_contig104.311.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=408bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig104:60795..61618+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGTGCCATAACGTTTCACAGGTGTGCCTGCCTTGCCACTTCTTCGG
GTATGTTCCCCCCTCAAAGGAAGTCGCAGAGATGCTGTGCCATAACGTTT
CACAGGTGTGCCTGCCTTGCCACTTCTTCGGGTATGTTCCCCCCTCAAAG
GAAGTCGCAGAGATTATTGGAGGCAAGCGATCGGTGGTGTTGCCGGAACC
AACTCTTTCGGAGCGGATAGGGACGGCAAAGGCTACCACAACCAAGGTTG
GTGGCGGCAGAGCCTTAGCACTGGCCACCACGTAAATTATTGGAGGCAAG
CGATCGGTGGTGTTGCCGGAACCAACTCTTTCGGAGCGGATAGGGACGGC
AAAGGCTACCACAACCAAGGTTGGTGGCGGCAGAGCCTTAGCACTGGCCA
CCACGTAA
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