prot_E-siliculosus-1a_F_contig104.307.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_F_contig104.307.1
Unique Name	prot_E-siliculosus-1a_F_contig104.307.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length	562

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig104.307.1 vs. uniprot
Match: D7G6G6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6G6_ECTSI)

HSP 1 Score: 946 bits (2445), Expect = 0.000e+0
Identity = 531/648 (81.94%), Postives = 540/648 (83.33%), Query Frame = 0

Query:    1 MEGPVADALLKLLRYFHNPELVGSLLLLYVVHVVGFTVNIPHLFLNGLKFIVAPTEEAVLRIRSDAKGPRPEPLGQLDREGKDANAYDKMDALGLARMEVSRGTLGGLMYFPQYEGMVLWAVIALGNFVIAQGSRCAIPTQT---------------------------------------------------------------------------------------PLGWASLTLCGALLRCWWCNVRLIYLLGLNNDYSKFALLSGFCGLFAAAAVAAMLPPAFLAFDVRAAAAALHAWGGAVRGGGDAAGPPGGVSAVVSREDFLAMFLPTVSVVAACVTAAAALPAIRFSQYFSRALGRGSGATLVYRALLVADGVLPWLASLVWITEVPPLFLGERWGGGDAGGGLALRVGVTGLAAWARLAVGKLQVQAYLEGVKESVLVDLREKKVDSQAVRSKFDARLQYLVIAAAQYAAPALTVLFSLALLVHVGDAAKGGNVASGAGGRAGLGVCDAARRVVGLESWGTAFAAAAGAAEAPNSGAAVGGGEALGLGGGGLAAFVSTIPEFPEAFWSGAAGFLAWWACLSWAVTYAVGVAFWFVFPEDVSVTERVPTDRTTKGKKERVKGXXXXXXXXXXXXXXGKG 561
            MEGPVADALLKLLRYFHNPELVGSLLLLYVVHVVGFTVNIPHLFLNGLKFIVAPT+EAVLRIRSDAKGPRPEPLGQLDREGKDANAYDKMDALGLARMEVSRGTLGGLMYFPQYEGMVLWAVIALGNF IAQGSRCAIPTQT                                                                                       PLGWASLTLCGALLRCWWCNVRLIYLLGLNNDYSKFALLSGFCGLFAAAAVAAMLPP+FLAFDVRAAAAALHAWGGAVRGG DAA PPGGVSAVVSREDFLAMFLPTV+VVAACVTAAAALPAIRFSQYFSRALGRGSGATLVYRALLV DGVLPWLASLVWI+EVPPL LGERWGGGDAG  LALRVGVTGLAAWARLAVGKLQ+QAYLEGVKESVLVDLREKKVDSQ+VRSKFDARLQYLVIAAAQYAAPALTVLFSLALLVHVGDAA GG++ASG GGRAGLGVCDAARRVVGLESWGTAFAAAAGAAEAPNS          GLGGGGLAAF+STIPEFPEAFWSG  GFLAWWACLSWAVTYAVGVAFWFVFPEDVSVTERVPTDRTTKGKKERVKGXXXXXXXXXXXXXXGKG
Sbjct:    1 MEGPVADALLKLLRYFHNPELVGSLLLLYVVHVVGFTVNIPHLFLNGLKFIVAPTQEAVLRIRSDAKGPRPEPLGQLDREGKDANAYDKMDALGLARMEVSRGTLGGLMYFPQYEGMVLWAVIALGNFFIAQGSRCAIPTQTKCEHRGSAKKEKSPRSGAFCTANLVHSLPSAFFDALRCPPTSSFGVPIAHLDSCLLLLPQTPFTPSFSLALFDVLLLLWRDPSGGGRPLGWASLTLCGALLRCWWCNVRLIYLLGLNNDYSKFALLSGFCGLFAAAAVAAMLPPSFLAFDVRAAAAALHAWGGAVRGGSDAAVPPGGVSAVVSREDFLAMFLPTVAVVAACVTAAAALPAIRFSQYFSRALGRGSGATLVYRALLVVDGVLPWLASLVWISEVPPLVLGERWGGGDAGRALALRVGVTGLAAWARLAVGKLQLQAYLEGVKESVLVDLREKKVDSQSVRSKFDARLQYLVIAAAQYAAPALTVLFSLALLVHVGDAATGGDLASGTGGRAGLGVCDAARRVVGLESWGTAFAAAAGAAEAPNSXXXXXXXXXXGLGGGGLAAFISTIPEFPEAFWSGVTGFLAWWACLSWAVTYAVGVAFWFVFPEDVSVTERVPTDRTTKGKKERVKGXXXXXXXXXXXXXXGKG 648

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig104.307.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig104.307.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G6G6_ECTSI	0.000e+0	81.94	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019395	Transmembrane protein 161A/B	PFAM	PF10268	Tmemb_161AB	coord: 43..515 e-value: 1.5E-13 score: 50.2
IPR019395	Transmembrane protein 161A/B	PANTHER	PTHR13624	FAMILY NOT NAMED	coord: 24..519
None	No IPR available	PANTHER	PTHR13624:SF6	DBJ\|BAA83359.1	coord: 24..519
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 242..263
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 497..519
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 284..306
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 41..116
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 520..561
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 167..177
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 344..382
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 117..134
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 383..406
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..20
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 178..197
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 198..241
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 21..40
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 307..325
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 407..496
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 264..283
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 326..343
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 146..166
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 135..145
None	No IPR available	TMHMM	TMhelix		coord: 242..264
None	No IPR available	TMHMM	TMhelix		coord: 21..43
None	No IPR available	TMHMM	TMhelix		coord: 109..131
None	No IPR available	TMHMM	TMhelix		coord: 284..306
None	No IPR available	TMHMM	TMhelix		coord: 180..202
None	No IPR available	TMHMM	TMhelix		coord: 326..343
None	No IPR available	TMHMM	TMhelix		coord: 384..406
None	No IPR available	TMHMM	TMhelix		coord: 497..519

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig104	contig	E-siliculosus-1a_F_contig104:2743..8738 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig104.307.1	mRNA_E-siliculosus-1a_F_contig104.307.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	mRNA	E-siliculosus-1a_F_contig104 2743..8767 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_F_contig104.307.1 ID=prot_E-siliculosus-1a_F_contig104.307.1|Name=mRNA_E-siliculosus-1a_F_contig104.307.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=562bp
MEGPVADALLKLLRYFHNPELVGSLLLLYVVHVVGFTVNIPHLFLNGLKF
IVAPTEEAVLRIRSDAKGPRPEPLGQLDREGKDANAYDKMDALGLARMEV
SRGTLGGLMYFPQYEGMVLWAVIALGNFVIAQGSRCAIPTQTPLGWASLT
LCGALLRCWWCNVRLIYLLGLNNDYSKFALLSGFCGLFAAAAVAAMLPPA
FLAFDVRAAAAALHAWGGAVRGGGDAAGPPGGVSAVVSREDFLAMFLPTV
SVVAACVTAAAALPAIRFSQYFSRALGRGSGATLVYRALLVADGVLPWLA
SLVWITEVPPLFLGERWGGGDAGGGLALRVGVTGLAAWARLAVGKLQVQA
YLEGVKESVLVDLREKKVDSQAVRSKFDARLQYLVIAAAQYAAPALTVLF
SLALLVHVGDAAKGGNVASGAGGRAGLGVCDAARRVVGLESWGTAFAAAA
GAAEAPNSGAAVGGGEALGLGGGGLAAFVSTIPEFPEAFWSGAAGFLAWW
ACLSWAVTYAVGVAFWFVFPEDVSVTERVPTDRTTKGKKERVKGKAKAKG
GGKGAGAGGKG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019395	Transmembrane_161A/B