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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10396.306.1 vs. uniprot
Match: D7FHA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA9_ECTSI) HSP 1 Score: 351 bits (901), Expect = 1.210e-119 Identity = 191/207 (92.27%), Postives = 194/207 (93.72%), Query Frame = 1 Query: 22 QQTAVVADTKMQMVRNLRRICASASSPTRSPPQPDVAGAQTAVSVAHNMFSNIVARRPGPFFRPHRHXXXXXXXXXXXGEPQQMYRKVRLKYAVASPFGSSQNEGAQGHTLREGEDEVTYTETYCISGLPMFRGNLVVKTTFRVTRSEHDPENSVRVKVCVVVGDVKLSRAIAWLSKGVKYAIRDSGMKQAAKTLQDMAEAKSNLWL 642
QQTAVVADTKMQMVRNLRRI A+ASSPT SPPQPD AGAQTAVSVAHNMFSN+VARRPGPF RPHRH XXXXXXXXX EPQQMYRKVRLKYAV+SP GSSQNEGAQGHTLREGEDEVTYTET CISGLPMFRGNLVVKTTFRVTRSEHDPENSVRVKVCVVVGDVKLSRAIAWLSKGVKYAIRDSG KQAAKTLQDM EAKS WL
Sbjct: 116 QQTAVVADTKMQMVRNLRRIYAAASSPTHSPPQPDGAGAQTAVSVAHNMFSNVVARRPGPFLRPHRHQXXXXXXXXX-SEPQQMYRKVRLKYAVSSPIGSSQNEGAQGHTLREGEDEVTYTETDCISGLPMFRGNLVVKTTFRVTRSEHDPENSVRVKVCVVVGDVKLSRAIAWLSKGVKYAIRDSGTKQAAKTLQDMVEAKSKAWL 321
BLAST of mRNA_E-siliculosus-1a_F_contig10396.306.1 vs. uniprot
Match: D7FHB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB0_ECTSI) HSP 1 Score: 168 bits (425), Expect = 2.150e-44 Identity = 87/125 (69.60%), Postives = 101/125 (80.80%), Query Frame = 1 Query: 259 EPQQMYRKVRLKYAVASPFGSSQNEGAQGHTLREGEDEVTYTETYCISGLPMFRGNLVVKTTFRVTRSEHDPENSVRVKVCVVVGDVKLSRAIAWL-SKGVKYAIRDSGMKQAAKTLQDMA-EAK 627
+P+Q+YRK+RL+ +V+SPFG+S N+ QGHTL E EDEVTYTET CIS LPMFRGNLVVKTTFRVTRSE DPENSVRVKV VVV DVKL R + WL SK V+ ++RD G KQAA T+ M EAK
Sbjct: 1079 KPRQIYRKIRLRTSVSSPFGTSHNDALQGHTLSESEDEVTYTETDCISKLPMFRGNLVVKTTFRVTRSEDDPENSVRVKVTVVVRDVKLIRGMGWLMSKAVQKSVRDGGKKQAANTMNAMVLEAK 1203
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 645 |
| Model size | 645 |
| Exons | 4 |
| Ec32 ortholog | Ec-03_004140.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10396.306.1 >prot_E-siliculosus-1a_F_contig10396.306.1 ID=prot_E-siliculosus-1a_F_contig10396.306.1|Name=mRNA_E-siliculosus-1a_F_contig10396.306.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=215bp
MFTDPRTQQTAVVADTKMQMVRNLRRICASASSPTRSPPQPDVAGAQTAV
SVAHNMFSNIVARRPGPFFRPHRHQQQQQQQQQRQGEPQQMYRKVRLKYA
VASPFGSSQNEGAQGHTLREGEDEVTYTETYCISGLPMFRGNLVVKTTFR
VTRSEHDPENSVRVKVCVVVGDVKLSRAIAWLSKGVKYAIRDSGMKQAAK
TLQDMAEAKSNLWL* back to topmRNA from alignment at E-siliculosus-1a_F_contig10396:107..2241+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10396.306.1 ID=mRNA_E-siliculosus-1a_F_contig10396.306.1|Name=mRNA_E-siliculosus-1a_F_contig10396.306.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2135bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10396:107..2241+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCACAGACCCACGAACACAGCAGACAGCCGTTGTTGCCGACACAAA
GATGCAGGTAATGACTACACGATCGCTCCCCGGGACGAGCCTCCTCTCGG
TGTACCGATTCACAGCGGTACCCCATTCCTCGCCCGCGGCATGAATACGA
ATAGAATCTTGCGCGAGATAACCTCTTGCGTATGGGTGGAAAGAAATCTG
TGGAATCATGTGCACGTGTGCGTACCGCGATTCAATGGCCAGGCGTGTGT
GTTCTCTCTTTGTTGCTACGGCGTGAAGTCCTCGTAGGTAGACGGTTTGT
GCTGGGGCCCGCTGGGCGACGGGCCGAAGGCGGTCGAATTTTGGCGAGTT
TAGCTTTGACAGTAAATTGAATTCGACGTCAAGGAATGATCGAGTGCTTG
ATTCGACAAACGCGTTCGTTTCTTGCTGGAGCTGCTTCTATTCCCGGCGT
CAAGCTCACACTTGTACAAAGAGATATCTCTGGGCGAAGAAGGTGGTGGC
AACAAGCGGTTGATAACCGAGCACCAAGACGACAGCAGTCCCACCAACAC
ACGCTGCCACGTCGTTCGTTCAGCGTTCAAGTAAACGATTGGTTGTGTGT
ACATGGTCGTCGTCTCTTATCACCCCGACATGCTTGTGTTCTTCGTCATG
GCTGATGTCTGACTGTTACACTCGCGGCCGAACTTAAAATACGTTAATAT
ATAACGAACCGTTTCCTGTCCCCAACCGGCAGATGGTTCGCAACTTGCGC
CGCATCTGCGCCTCGGCCTCCTCGCCCACGCGCTCTCCTCCCCAGCCGGA
CGTCGCGGGTGCTCAAACCGCAGTGTCGGTCGCCCACAACATGTTCTCTA
ACATTGTCGCACGGCGGCCGGGCCCCTTCTTCCGCCCCCACCGCCACCAA
CAGCAGCAGCAGCAGCAGCAGCAACGGCAGGGTGAGCCCCAGCAGATGTA
CCGCAAGGTCCGCCTCAAGTACGCTGTCGCCTCGCCTTTCGGCTCCTCCC
AGAACGAGGGCGCACAGGGACACACGTGAGTGGGAAGATGACCTGCTTGT
GTTGCCTGTTCTCGCCACGGCTGTGGTGCGTCGGCGGCGTCCCCAACGCG
AACGCGCCAAGACGTTGCAGATTGACGTCGGAAGCTCACACATGTCTGTC
CGCTGTTCGACTGACTAGTGGCATTTTCCTCTGGTAGCAAAGGGTGTTGG
GTGTAAAACCGGGCTAGGATTCATCCGTGGCGCCTTCGACGTTCGGCCTT
TGTGGCCACCTGCTGCGCAGGAAAAAAAACACGTTGCTTTTCACTTTCAC
GACGCCAGAGACGGACCCCCCTCCCCGTCATTCCTACCAAGCCGTCCACC
GTGCCCCCTGACCAGCGTGCATGCATCGAGCTACTGTTGATTCTTGAAGC
GTGTGTCTGTGCAGGTTTTGCCCGAAAATACTCTCGATTGTTCTCTACCT
ATGTTTGTTTGTAGAGAGCGCCGCTTTTTCGTATTTCGTGCAAGCATATT
TCCCCTTTTTTCTCCCGTGTCTTGTTGAATCAGGTTGCGCGAGGGCGAGG
ACGAGGTGACCTACACGGAGACCTACTGCATCTCCGGGCTGCCAATGTTC
CGCGGCAACCTAGTCGTCAAAACCACCTTCCGAGTAACCCGATCCGAGCA
CGACCCCGAAAACTCCGTCCGAGTCAAGGTGGGCAGCGGTGACCACGTGA
TACTTTGAAAGCTCATAACGCTCGCGCTGGGTGCAGTCTCTTCTATGCCT
CACGCATGACTTGTCGTTCGAGTACGTATTATAGCTCCGAAAACTAATAA
TGTTGTCCAGCCACTCAAAGAGCGACCGAACAGATGTCTATCGCGATGGT
GGTGGCATGAAGTTGGATACTCGAAGAAAACGTCAAATTCATATGGTTTT
GCGAATTCTTCCTCCCAAGCTCTTTGATTTCACAGTCCCTGACCTCTTGC
GGTGGTGATGTCGTTGTTGTCGTCGGCATCGCCAGGTTTGCGTGGTCGTG
GGAGACGTGAAGCTCTCGAGAGCGATCGCCTGGCTTAGCAAGGGGGTGAA
GTACGCCATTAGGGACAGCGGCATGAAGCAGGCCGCGAAGACGCTGCAGG
ACATGGCCGAAGCCAAGTCCAATTTGTGGTTGTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10396:107..2241+ >mRNA_E-siliculosus-1a_F_contig10396.306.1 ID=mRNA_E-siliculosus-1a_F_contig10396.306.1|Name=mRNA_E-siliculosus-1a_F_contig10396.306.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1290bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10396:107..2241+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCACAGACCCACGAACACAGCAGACAGCCGTTGTTGCCGACACAAA
GATGCAGATGTTCACAGACCCACGAACACAGCAGACAGCCGTTGTTGCCG
ACACAAAGATGCAGATGGTTCGCAACTTGCGCCGCATCTGCGCCTCGGCC
TCCTCGCCCACGCGCTCTCCTCCCCAGCCGGACGTCGCGGGTGCTCAAAC
CGCAGTGTCGGTCGCCCACAACATGTTCTCTAACATTGTCGCACGGCGGC
CGGGCCCCTTCTTCCGCCCCCACCGCCACCAACAGCAGCAGCAGCAGCAG
CAGCAACGGCAGGGTGAGCCCCAGCAGATGTACCGCAAGGTCCGCCTCAA
GTACGCTGTCGCCTCGCCTTTCGGCTCCTCCCAGAACGAGGGCGCACAGG
GACACACATGGTTCGCAACTTGCGCCGCATCTGCGCCTCGGCCTCCTCGC
CCACGCGCTCTCCTCCCCAGCCGGACGTCGCGGGTGCTCAAACCGCAGTG
TCGGTCGCCCACAACATGTTCTCTAACATTGTCGCACGGCGGCCGGGCCC
CTTCTTCCGCCCCCACCGCCACCAACAGCAGCAGCAGCAGCAGCAGCAAC
GGCAGGGTGAGCCCCAGCAGATGTACCGCAAGGTCCGCCTCAAGTACGCT
GTCGCCTCGCCTTTCGGCTCCTCCCAGAACGAGGGCGCACAGGGACACAC
GTTGCGCGAGGGCGAGGACGAGGTGACCTACACGGAGACCTACTGCATCT
CCGGGCTGCCAATGTTCCGCGGCAACCTAGTCGTCAAAACCACCTTCCGA
GTAACCCGATCCGAGCACGACCCCGAAAACTCCGTCCGAGTCAAGGTTGC
GCGAGGGCGAGGACGAGGTGACCTACACGGAGACCTACTGCATCTCCGGG
CTGCCAATGTTCCGCGGCAACCTAGTCGTCAAAACCACCTTCCGAGTAAC
CCGATCCGAGCACGACCCCGAAAACTCCGTCCGAGTCAAGGTTTGCGTGG
TCGTGGGAGACGTGAAGCTCTCGAGAGCGATCGCCTGGCTTAGCAAGGGG
GTGAAGTACGCCATTAGGGACAGCGGCATGAAGCAGGCCGCGAAGACGCT
GCAGGACATGGCCGAAGCCAAGTCCAATTTGTGGTTGTGAGTTTGCGTGG
TCGTGGGAGACGTGAAGCTCTCGAGAGCGATCGCCTGGCTTAGCAAGGGG
GTGAAGTACGCCATTAGGGACAGCGGCATGAAGCAGGCCGCGAAGACGCT
GCAGGACATGGCCGAAGCCAAGTCCAATTTGTGGTTGTGA back to top
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