Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1039.302.1 vs. uniprot
Match:
A0A6H5KUV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV6_9PHAE)
HSP 1 Score: 547 bits (1409), Expect = 3.620e-192
Identity = 330/412 (80.10%), Postives = 339/412 (82.28%), Query Frame = 1
Query: 7 MVVRATRVLVGRCRQISASRCAGQRQRHSRNYYGDAPVRLSAARCLATVAAAPLPRPQPTSSLSCPARPHSXXXXXXXXXXXXXXXXNYTKIRSPXXXXXXXXXXXXXXX---SKTPAVAASRRALRVCSSSPSQFRQRQMRQEHYKTDARSTGQGGKVDDGGGVRQGEGDRSSRDGERFEEEEEEGAASMIEKESDRVWTVPNIITMGRIAFCPVLAGLIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVPPALVALMVGRDALLVAGSIAYRFKTRREGDAFFDLDSLDYKVTPSTLSKVNTVLQFGTLWLGLTNSVYLVPGDAVFSALCVGTGVATLASGVNYLLVSGLKPKGRLGKRLMIQRENLQERYREREVLVR 1233
MVVRATRVLVGRCRQ+SA RCAGQRQRHSRNYYG+ PVRLSAARCLATVAAAP PQPTSSLS PARPHS N TKIRS XXXXXXXXXXXXXXX SKTPA++ASRRALR GEGDRSSRDGERFEEE E+G SMI+KESDRVWTVPN+ITMGRIAFCPVLAGLIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVP ALVALMVGRDALL+ GSIAYRFKTRREGD FFDLDSLDYKVTPSTLSKVNTVLQFGTLWLGLTNSVYLVPGDAVFSALCVGTGVATLASGVNYLLVSGLKPKGRLGKRLMIQR+NLQERYREREVLVR
Sbjct: 1 MVVRATRVLVGRCRQMSA-RCAGQRQRHSRNYYGEVPVRLSAARCLATVAAAP---PQPTSSLSFPARPHSSSTACRRRSGAAS---NSTKIRSXXXXXXXXXXXXXXXXXXXSKTPAISASRRALR----------------------------------------GEGDRSSRDGERFEEEGEKGVGSMIKKESDRVWTVPNMITMGRIAFCPVLAGLIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVPAALVALMVGRDALLITGSIAYRFKTRREGDDFFDLDSLDYKVTPSTLSKVNTVLQFGTLWLGLTNSVYLVPGDAVFSALCVGTGVATLASGVNYLLVSGLKPKGRLGKRLMIQRQNLQERYREREVLVR 365
BLAST of mRNA_E-siliculosus-1a_F_contig1039.302.1 vs. uniprot
Match:
D7FT37_ECTSI (CDP-alcohol phosphatidyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT37_ECTSI)
HSP 1 Score: 421 bits (1082), Expect = 1.410e-144
Identity = 217/222 (97.75%), Postives = 220/222 (99.10%), Query Frame = 1
Query: 568 MIEKESDRVWTVPNIITMGRIAFCPVLAGLIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVPPALVALMVGRDALLVAGSIAYRFKTRREGDAFFDLDSLDYKVTPSTLSKVNTVLQFGTLWLGLTNSVYLVPGDAVFSALCVGTGVATLASGVNYLLVSGLKPKGRLGKRLMIQRENLQERYREREVLVR 1233
M+EKESDRVWTVPN+ITMGRIAFCPVLA LIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVP ALVALMVGRDALL+AGSIAYRFKTRREGDAFFDLDSLDYKVTPSTLSKVNTVLQFGTLWLGLTNSVYLVPGDAVFSALCVGTGVATLASGVNYLLVSGLKPKGRLGKRLMIQRENLQERYREREVLVR
Sbjct: 1 MVEKESDRVWTVPNMITMGRIAFCPVLASLIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVPTALVALMVGRDALLIAGSIAYRFKTRREGDAFFDLDSLDYKVTPSTLSKVNTVLQFGTLWLGLTNSVYLVPGDAVFSALCVGTGVATLASGVNYLLVSGLKPKGRLGKRLMIQRENLQERYREREVLVR 222
BLAST of mRNA_E-siliculosus-1a_F_contig1039.302.1 vs. uniprot
Match:
A0A4D9CZ77_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ77_9STRA)
HSP 1 Score: 165 bits (417), Expect = 5.600e-45
Identity = 89/189 (47.09%), Postives = 124/189 (65.61%), Query Frame = 1
Query: 592 VWTVPNIITMGRIAFCPVLAGLIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVPPALVALMVGRDALLVAGSIAYRFKTRREGDAFFDLDS-LDYKVTPSTLSKVNTVLQFGTLWLGLTNSVY--LVPG--DAVFSALCVGTGVATLASGVNYLLVSG 1143
+WTVPNIIT+ RI P+LAGLI+ ++ A+ GL A+ +DWLDG+IA+ + Q+SVLG FLDPLADKV+V +A+ L QG++P L+ +++GRDALL+ GS R + R G FFD S +++TP+ LSK+NT LQF L L +++ +P D VF LC TG T+ SG+ YL G
Sbjct: 1 MWTVPNIITLARILSSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLAFQGLIPTPLLVVVLGRDALLIGGSFIKRLQNRPAGAPFFDTSSSATFQITPNLLSKINTTLQFTVLTFALCRALWGDAIPAAVDEVFEPLCWLTGGTTVGSGLTYLAGDG 189
BLAST of mRNA_E-siliculosus-1a_F_contig1039.302.1 vs. uniprot
Match:
A0A8K1CPA2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPA2_PYTOL)
HSP 1 Score: 164 bits (415), Expect = 9.530e-44
Identity = 89/182 (48.90%), Postives = 117/182 (64.29%), Query Frame = 1
Query: 589 RVWTVPNIITMGRIAFCPVLAGLIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVPPALVALMVGRDALLVAGSIAYRFKTRREGDAFFDL-DSLDYKVTPSTLSKVNTVLQFGTLWLGLTNSVYLVPGDAVFSALCVGTGVATLASGVNYL 1131
+V VPN+IT RI P L LI + + A+ L AA L+DWLDGYIARK+KQ S++G FLDP ADK+MV T++L++ G++P LV L+ GRD LLV+G+ +R KT+ AFFD DS ++V P+ LSKVNT LQF T L LTN+ + +PGD + L G T SG YL
Sbjct: 97 QVVNVPNVITFARIVATPYLGYLIYSGSYASAVGVLAAAGLSDWLDGYIARKFKQESIIGSFLDPFADKLMVGTLSLSMLSSGLLPWPLVVLVFGRDFLLVSGTFYHRLKTKAADSAFFDTSDSGAFQVAPTMLSKVNTALQFSTFGLALTNAAWQIPGDLALNTLFGVVGTTTFLSGAEYL 278
BLAST of mRNA_E-siliculosus-1a_F_contig1039.302.1 vs. uniprot
Match:
W7TR40_9STRA (Cdp-diacylglycerol--glycerol-3-phosphate 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TR40_9STRA)
HSP 1 Score: 164 bits (414), Expect = 5.050e-43
Identity = 89/191 (46.60%), Postives = 124/191 (64.92%), Query Frame = 1
Query: 586 DRVWTVPNIITMGRIAFCPVLAGLIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVPPALVALMVGRDALLVAGSIAYRFKTRREGDAFFDL-DSLDYKVTPSTLSKVNTVLQFGTLWLGLTNSVY--LVPG--DAVFSALCVGTGVATLASGVNYLLVSG 1143
+ +WTVPNIIT+ RI P+LAGLI+ ++ A+ GL A+ +DWLDG+IA+ + Q+SVLG FLDPLADKV+V +A+ L QG +P L+ +++GRDALL+ GS R + R G FFD S +++TP+ LSK+NT LQF L L +++ +P D VF LC TG T+ SG+ YL G
Sbjct: 129 ETMWTVPNIITLARIISSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDTASSATFQITPNLLSKINTTLQFIVLTFALCRALWGDAIPAAVDEVFEPLCWLTGGTTVGSGLTYLAGDG 319
BLAST of mRNA_E-siliculosus-1a_F_contig1039.302.1 vs. uniprot
Match:
A0A1V9ZN07_9STRA (Cardiolipin synthetase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZN07_9STRA)
HSP 1 Score: 158 bits (399), Expect = 4.020e-42
Identity = 85/182 (46.70%), Postives = 116/182 (63.74%), Query Frame = 1
Query: 589 RVWTVPNIITMGRIAFCPVLAGLIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVPPALVALMVGRDALLVAGSIAYRFKTRREGDAFFDLDSL-DYKVTPSTLSKVNTVLQFGTLWLGLTNSVYLVPGDAVFSALCVGTGVATLASGVNYL 1131
+V TVPN IT RI P L LIV+ + A+ L AA L+DWLDGY+ARK KQ +++G FLDPLADKVMV T+ +++G G++P LV ++ GRD LL+ G++ +R+ T+ FF D L ++V PS LSK NT LQF TL L N+ + VPGD + + ++T ASG YL
Sbjct: 41 KVVTVPNAITFTRILSTPYLGYLIVSGSYPAAVGVLGAAGLSDWLDGYLARKLKQKTIVGTFLDPLADKVMVGTLCVSMGYTGLLPLPLVIVIFGRDLLLIGGTLYHRYHTKTSNSDFFQTDDLTSFEVNPSLLSKANTALQFATLGGALLNAAFQVPGDLALNVMFGSVAISTFASGSMYL 222
BLAST of mRNA_E-siliculosus-1a_F_contig1039.302.1 vs. uniprot
Match:
A0A067CS69_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CS69_SAPPC)
HSP 1 Score: 154 bits (389), Expect = 2.030e-40
Identity = 84/189 (44.44%), Postives = 119/189 (62.96%), Query Frame = 1
Query: 574 EKESD--RVWTVPNIITMGRIAFCPVLAGLIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVPPALVALMVGRDALLVAGSIAYRFKTRREGDAFFDLDSL-DYKVTPSTLSKVNTVLQFGTLWLGLTNSVYLVPGDAVFSALCVGTGVATLASGVNYL 1131
EK +D +V T+PN IT RI P L LIV+ + A+ L AA +DWLDGY+ARK Q +++G FLDPLADKVMV T+ +++G G++P L+ ++ GRD LL+ G++ +R+ T+ AFF D L ++V PS LSK NT LQF TL L N+ + +PGD + + ++T ASG YL
Sbjct: 54 EKANDPHQVVTLPNAITFTRILSTPYLGYLIVSGSYPAAIGVLGAAGFSDWLDGYLARKLNQKTIVGTFLDPLADKVMVGTLCVSMGYAGLLPLPLIVVIFGRDLLLIGGTLYHRYHTKTNSSAFFQTDDLTSFEVNPSNLSKANTALQFATLGGALLNAAFHMPGDLAMNVMFGSVALSTFASGSMYL 242
BLAST of mRNA_E-siliculosus-1a_F_contig1039.302.1 vs. uniprot
Match:
A0A1V9YRT6_9STRA (Cardiolipin synthetase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YRT6_9STRA)
HSP 1 Score: 152 bits (385), Expect = 5.740e-40
Identity = 85/194 (43.81%), Postives = 118/194 (60.82%), Query Frame = 1
Query: 559 AASMIEKESDR--VWTVPNIITMGRIAFCPVLAGLIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVPPALVALMVGRDALLVAGSIAYRFKTRREGDAFFDLDSL-DYKVTPSTLSKVNTVLQFGTLWLGLTNSVYLVPGDAVFSALCVGTGVATLASGVNYL 1131
+AS EK ++ V +PN IT RI P L LI T + AL L A +DWLDGY+ARK Q +++G FLDPLADK+MV T+ +++ G++P ++ ++ GRD LLV G+ +R+ T+ G FF D L ++VTPS LSKVNT LQFGTL L N+ + PG+ + L ++T ASG YL
Sbjct: 38 SASSNEKSNNPHDVVNLPNAITFTRIVSTPYLGYLIATGNYPTALGVLGVAGFSDWLDGYLARKLNQKTIVGTFLDPLADKLMVGTLCVSMAYTGLLPLPVMVIIFGRDLLLVGGTFYHRYHTKTSGSGFFQTDDLTSFEVTPSLLSKVNTALQFGTLGSALLNATFQFPGELAMNVLFGSVAISTFASGSMYL 231
BLAST of mRNA_E-siliculosus-1a_F_contig1039.302.1 vs. uniprot
Match:
K3WNK1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WNK1_GLOUD)
HSP 1 Score: 150 bits (380), Expect = 7.040e-39
Identity = 87/182 (47.80%), Postives = 114/182 (62.64%), Query Frame = 1
Query: 589 RVWTVPNIITMGRIAFCPVLAGLIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVPPALVALMVGRDALLVAGSIAYRFKTRREGDAFFDL-DSLDYKVTPSTLSKVNTVLQFGTLWLGLTNSVYLVPGDAVFSALCVGTGVATLASGVNYL 1131
+V VPN+IT RI P L+ LIV QHE A+ GL A +DWLDGYIAR +KQ S++G FLDP ADK+M+ ++L++ G++P LV L+ GRD LLV+G+ +R KT+ AFFD DS ++V P+ +SKVNT LQF LTN+ + VP D L G T ASG YL
Sbjct: 77 QVVNVPNVITFARILSTPYLSYLIVDGQHEAAI-GL--AGFSDWLDGYIARTYKQESIIGSFLDPFADKLMIGALSLSMMWSGLLPWPLVTLIFGRDVLLVSGTFYHRLKTKDVDTAFFDTSDSGAFEVKPTMISKVNTALQFALFGFTLTNAAWQVPFDPALQGLFGVVGATTFASGSEYL 255
BLAST of mRNA_E-siliculosus-1a_F_contig1039.302.1 vs. uniprot
Match:
A0A3F2RV38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RV38_9STRA)
HSP 1 Score: 149 bits (377), Expect = 7.120e-39
Identity = 80/182 (43.96%), Postives = 112/182 (61.54%), Query Frame = 1
Query: 589 RVWTVPNIITMGRIAFCPVLAGLIVTSQHELALAGLLAASLTDWLDGYIARKWKQTSVLGGFLDPLADKVMVTTVALALGQQGIVPPALVALMVGRDALLVAGSIAYRFKTRREGDAFFDL-DSLDYKVTPSTLSKVNTVLQFGTLWLGLTNSVYLVPGDAVFSALCVGTGVATLASGVNYL 1131
+V VPN+IT RI P L+ LI+ H A+ L A ++DWLDGYIAR + Q S++G FLDP ADK+++ T++L++ G++P L AL++GRD +L+ G++ +R KT+ E FFD DS ++V PS LSKVNT LQ L LTN+ + +P D L G T SG YL
Sbjct: 11 QVVNVPNVITAARILATPYLSYLIIQGDHVSAIGLLAVAGISDWLDGYIARTFHQESIVGSFLDPFADKLLIGTLSLSMMWTGLLPLPLAALILGRDGMLIGGTLYHRLKTKDESSGFFDTKDSGTFQVKPSLLSKVNTALQLSAFGLTLTNAAWQLPPDPALHVLFGVVGTTTFLSGSEYL 192
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1039.302.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 3.62e-192 / Id = 80.10 Expect = 1.41e-144 / Id = 97.75 Expect = 5.60e-45 / Id = 47.09 Expect = 9.53e-44 / Id = 48.90 Expect = 5.05e-43 / Id = 46.60 Expect = 4.02e-42 / Id = 46.70 Expect = 2.03e-40 / Id = 44.44 Expect = 5.74e-40 / Id = 43.81 Expect = 7.04e-39 / Id = 47.80 Expect = 7.12e-39 / Id = 43.96 Sequence A0A6H5KUV6_9PHAE D7FT37_ECTSI A0A4D9CZ77_9STRA A0A8K1CPA2_PYTOL W7TR40_9STRA A0A1V9ZN07_9STRA A0A067CS69_SAPPC A0A1V9YRT6_9STRA K3WNK1_GLOUD A0A3F2RV38_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 1299 Model size 1305 Exons 8 Ec32 ortholog Ec-04_002700.1 Ec32 ortholog description CDP-alcohol phosphatidyltransferase Hectar predicted targeting category mitochondrion BRITE br01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03032 Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. I EC 2.7.8.41,3.6.4.12 EggNOG OGs COG0558@1,KOG1617@2759 EggNOG free text desc. cardiolipin synthase activity GOs GO:0000002,GO:0001101,GO:0003674,GO:0003824,GO:0003841,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006163,GO:0006164,GO:0006605,GO:0006612,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006873,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0008104,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0008808,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016780,GO:0016787,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019866,GO:0030145,GO:0030572,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032048,GO:0032049,GO:0033036,GO:0033993,GO:0034613,GO:0034641,GO:0034654,GO:0036148,GO:0042127,GO:0042171,GO:0042221,GO:0042391,GO:0042493,GO:0042592,GO:0042886,GO:0043167,GO:0043169,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043337,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045184,GO:0046034,GO:0046390,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0046683,GO:0046872,GO:0046907,GO:0046914,GO:0047144,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051881,GO:0055082,GO:0055086,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0071617,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072521,GO:0072522,GO:0072657,GO:0090150,GO:0090407,GO:0097066,GO:0097068,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901698,GO:1901700,GO:1904386,GO:1905711 KEGG Module M00178,M00179 KEGG Pathway ko00564,ko01100,ko03010,map00564,map01100,map03010 KEGG Reaction R02030 KEGG ko ko:K02950,ko:K08744,ko:K10737 KEGG rclass RC00002,RC00017 Preferred name CRLS1 Seed eggNOG ortholog 2880.D7FT37 Seed ortholog evalue 3.9e-115 Seed ortholog score 421.8 Taxonomic scope Eukaryota
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927541.4692492-UTR-E-siliculosus-1a_F_contig1039:25349..25355 1622927541.4692492-UTR-E-siliculosus-1a_F_contig1039:25349..25355 Ectocarpus siliculosus Ec863f_EcPH12_90f female UTR E-siliculosus-1a_F_contig1039 25350..25355 - 1696318576.3299372-UTR-E-siliculosus-1a_F_contig1039:25349..25355 1696318576.3299372-UTR-E-siliculosus-1a_F_contig1039:25349..25355 Ectocarpus siliculosus Ec863f_EcPH12_90f female UTR E-siliculosus-1a_F_contig1039 25350..25355 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1039.302.1
>prot_E-siliculosus-1a_F_contig1039.302.1 ID=prot_E-siliculosus-1a_F_contig1039.302.1|Name=mRNA_E-siliculosus-1a_F_contig1039.302.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=433bp
MVVRATRVLVGRCRQISASRCAGQRQRHSRNYYGDAPVRLSAARCLATVA back to top mRNA from alignment at E-siliculosus-1a_F_contig1039:19952..25355-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1039.302.1 ID=mRNA_E-siliculosus-1a_F_contig1039.302.1|Name=mRNA_E-siliculosus-1a_F_contig1039.302.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5404bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:19952..25355- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)CACACC ATGGTGGTGCGAGCAACGAGAGTTCTTGTGGGCAGGTGCCGCCA
GATATCGGCCAG GTGATAAACGCAATGCTCCAATGTCGTTTCTGTTGGAG
GAATCACGCATCATCTTGCTCCCCTGTCTCGTACAATATGATCCCGGTTT
CTTTCGCACTCGCTCTCTGTCGTTGTTATGCGACCGTTCGAGTTTTGTTC
TTGGAAAGCCACGAGCGCGTGAGATACTCTGGTCCTCCCTTTGCAGTTAT
AGCCTGCACTGCGTGTGCCATGGGTTGGCTTGGGTCGTCTCGCCTCATGG
AATGTACTACATCTCCACGCCGCTTCAGCTTTGGAGAGGTTTCCACTTGA
CAGAGCATGGAGCAACCACAACTGCTGTAACAGCAGTACAGGCAGTAGCT
GTCCACCGCGCCTTGACATATGCCTACTGGCAACCGTCCTTCGTGATTAG
GCGAAAGGATTGGACTACCACTACTGTCCAGTTGGGTTGTACGGCTAAAG
TCGTTATTCTGGTTGGTATTACCGTGGTTGGTTGTATGCTGGATGGATGC
GGTAGAGTCGGTCGTGATCCCACATATGAAGCATGAGGAGCCCCGAGAAG
TCGTGTGCTTCGAGGCAAGAACCACAGACATACATAGCACGAACTCATGC
TGCTGAGAAGCGTGATTTTTCCGGTACCCACCATCTTCGCTAAGTAAACA
CTAAGCCTATTGGTCCCGGGGGGGGTTAAAACGCAGCCGTGGCAAGTGGC
AAGTGCTAACAGGGCCCAACAAGTTATTCCGCCCTCTCTATGTGCTTCGC
TCCCTTGTTGGCGTGAACACATACCAGCAGGTGCGCCGGTCAACGCCAAC
GCCACAGCCGCAACTACTACGGTGACGCGCCCGTGCGGCTGTCGGCTGCG
CGATGCCTCGCCACCGTCGCAGCGGCTCCACTGCCACGACCGCAGCCCAC
GTCGTCGCTATCGTGCCCGGCGCGGCCTCACAGCAGCAGCAGCAGCAGCA
CCGCCGGTCGAAGAAGAGGCGGTGCAGCTTCGAACTACACCAAGATACGA
TCGCCGTCGCCACAACAGCAGCGGCAGCAGCAGCAGGGGCAACAGCAGCG
ATCAAAGACACCGGCAGTCGCTGCCTCGAGGAGAGCGCTGAGGGTTTGCT
CTTCTAGCCCCAGTCAATTCCGACAGAGACAAATGCGGCAGGAGCACTAC
AAGACCGACGCCAGGAGCACCGGGCAAGGGGGAAAGGTAGACGATGGGGG
GGGAGTACGGCAGGGGGAGGGCGACAGGAGCAGCCGCGATGGCGAGCGTT
TTGAGGAGGAGGAAGAGGAGGGAGCCGCTTCGATGATTGAAAAG GTGTTT
GTTTTCGTGGCGGGGAACAGATTGGATTTGGGAAGGGTTGGGACGTGTGG
TCCGCCCACCTTTCTGTGTTGCTCGGGTGCACACAAGCTCCGGGTTCCTG
ATCAAGTTAACTCGGACCTACCACACGCGCGCACTGCTGTACACTCATGG
TGTGTGTGGCTGTGACATATGCTGCTTCCGTTTTTTGTCACGGGGGTTTT
GCATGACGTGACAACGCCAAAATACCGTACCGTCCTTTCCCTTATTAATA
GTAGTCTTTCTCACGCGAGTTCACCTTCATCGCCTTCATGGCGTTCTTAC
CTTGTCGCCGTTGTTGTCGTTGTTGTCGATTGATTTGCACGCGAGTGGAA
ACCGCTCACACACCCATCCTGTCGATCGCACGCCTGTCGCCTTCCCCTCT
GATCCCTCTCTGTTTGGCTTGTTCGTATTTTTGTATGTCCACCCCGTCCC
TCCCTTGTCCGTCCGCTCGAGGGCGCGTGGTCAATGGTCTAAATAACCGC
TAAGGCATGCAAAACATAAAGAGTAAGAGAACGCCATCCCTCCCTTCCTC
TCCTGCCTGTCTTGCGCTTGGTGTGTCCTCCTCCGATGTCGTCGCGGAAA
AGGAATCCGACCGTGTGTGGACCGTGCCCAACATTATCACCATGGGTCGG
ATAGCCTTCTGCCCTGTCCTGGCCGGCCTCATCGTCACCTCCCAGCACGA
GCTAGCTCTCGCCG GTGAGAGGGAGGCCTTGGTCTCCGGCCTTTTTTTTT
TTTTTTTATCTCCGAGGGCGGGGTAGGGTATCTATCCCGCACAGCCCGCG
TGACTGAGTGTGTGTGTGTGTGTCCTGCCGCTACGTGGTGGCACATGTTT
GTCCTTGTGGCATATCTTTTGTCCTTGACGTGTCACATCCGTCTCCTGTT
GTGCGGCATTATCCTAGAAACTTTTTGTCTGTACGTGCACCCTGCGGGAA
TTTTTCGCGGGTTCGATGTACGACGGCGTCCGGTGGGCTTTTCGTGTATC
GCGGATTTCTGTTTTGTTTGTGTCTCGCCCTTGTACCATATCCTGCGGGC
GCTCAGCGGCTTGCCCACGCCCTTTGTGTCTTGTTGTTCACGTGTTGTCT
TTTTGGTCGTAGTCGATACGCTCGATGGTGCCCGTTTGGTCCGGAGGTTA
CGATTAAATACATACGTAGTCCCACTGGTGCCGTTGACGAAGTTACCGAG
CTTCACCGTGCTCTGATGAGAACGTAAGCGGTACCTCATAAGATTCCTTG
TGTATGGTACTTGTTGTTGCTGTGCTGTTTTTTTTCCAGGGTTGCTGGCG
GCGAGCTTAACGGACTGGCTAGACGGATACATCGCACGGAAGTGGAAGCA
AACG GTGAGGAACAACGGCCGTAGTCGTCGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGTGTATAGCTATGTACAACGCCGCCCCCTGCTTTGCTTTGA
GACAACTGCAATGCTCCTTCCGTTCGGTGGCACAGCGTTCCCACCCTGTT
TCCTCCCCCCGAACTGATACCAGTGATGGGGTTCCTAACAACCATGCCTG
TTTCGCGGATAGAAGATCGTGGGAAGGAAGCATTTCGAAGGTATGCGCGT
TCGCGAGAGAGGCGTAAGCGCCACAGCCGGACTACATACCCGTACCGCAC
TGTTTCTCGGTGTGTCGAGGTCTTGCTGCTGGCATTTGGGCTTCCCGCGA
ATGCGTATGCCTTCGAAATGCTCCGTGCCCACATCTTTTCTATTCGCGAA
CAGGCGTAGTTTCTAGGAGTCACCTTCATTGGGCGGGGGGGGGGGGCAGG
GAGAAATTGCTTTGCCACGGAAAGAAGCATTGCAGTCGTCTCAAAGTAGA
GCAGGGGGGACCGTTGTACTTAGCTATACACAGCAGCCGCGACGTTTAGC
GGCGGGTTCTCTTTTGGGGCTGCGCGTCGTTTCGGGAAGCTGCGAGCCCT
TCACTCCGCTATTTCTTCCCCGTCGCTCCTGAACAGTATGGTAGCGTATA
TCTCAGAAACAAAGATAATGTAGCGTCCGACATGAAACACCTACATCTGT
TGGACACCCGATGATCACACGTCTTATCGAAACCGTTCTTGTACGACATC
ACCCTTAAGATGTTTTCTCCGTTTGTTCTCCAACCGACCGCATCACAGTC
AGTGCTTGGCGGGTTCTTGGACCCTTTGGCCGACAAAGTGATGGTGACCA
CGGTGGCACTGGCTCTGGGTCAGCAGGGAATCGTTCCTCCTGCTCTTGTG
GTGAGGAAGGCATTGAGGGAAATGGGTGGCGGGACGGGGTAGAGAGAGAA
GGGGGGGGGGGGGAGAGAGAGAGAGGGACACAGAGAGGGACAACGAGACA
GAGAATGAGAGAGAGAGACAGATAGAGACACACAGAGAGAGACAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGAGAACGGCATT
GACACAAGGCCAAGGGCTGGAGAAGAGCTTTAATGACGAGACCGCTGTTA
ACGACTCTCGGTGTTGTTTTGTCCTGTCCTTGCCTTGTCCAGGCACTAAT
GGTGGGGCGCGACGCGCTTCTCGTCGCGGGGTCCATTGCCTACCGCTTCA
AGACTCGAAGAGAAGGAGACGCTTTCTTCGACCTAGACTCCCTCGATTAC
AAGGTCACTCCCAGCACTCTCAGCAAA GTGAGGACAACTGCTGCTGCTGC
TGCTGCTTGTTTTGCCGAAACGTTGCCGCTGCGTGTACCCACGTGGTTGT
TGCTGCTGCTACTGCCTCGGCCTGTTGTTGATATTGCCGCCGCTGCTAGA
CACCGTTGCTCGCAGTGTGGGTGTACAGATGTACAGACGCTAAATATTAA
TTTTCTTTGTTGGAAGCATGTCTGTTAACGTCGCTCGATCCGCACGCACG
GCACAGGGTGGTTGCTGGCAATGACCTTGTCGCGCACCCAACGTGTCCTT
CTCCCCACAACACCAGCAGCGCCTTCAGAAAGAAAAAAGACACCCCACTC
CCTCTCGTATATCATCGCTCCCTCTCGACAGGTTTGGTCTGCCCTGACTT
TCTTCTCCCCCCCCCCCCTTTTTTGTTGTTGCTGGTCGCCGTCACCGTGA
CAGGTGAACACCGTCCTGCAGTTCGGCACTCTCTGGCTGGGACTGACCAA
CTCCGTCTACCTCGTTCCAGGAGACGCCGTTTTTTCCGCCTTGTG GTAAG
CGGGATAACCAAAGTGGGCTCTTTCCCTACCAGTCAGCGATGCTCGGCTA
CTTGTAGAGCATCTCTCGCAACCGTTAGGGTGTCGTCGACACTCTTTTCT
GTGACAAACATTTGGTGGTTGGTCACGATGCATCCTCGCCCCCCCCCCCA
CCCCCCCCCTTTTTTGACGATTTTGCCTCGTTGCGGTCGTTGTCTGCCGT
AACACACTCAATAGAGCAGCCCAACCGTTGGAGGCGTAGGTCTCTCTCAG
GAGTGCAGTCTGCGCACCGTCTCGGAATAGACAGGTCATAGTGATCACTG
GGGGAAAATGACTCGAACGCAGCACGCGTAGCAAACGGTTACACCTATCC
GCCTAACCGCCTTGCCTGTTACACCTTCGACACACCCAGCCCATGTAACT
GGCTATCAAGCCCACACACACCTCTATGGTTCTACCGTACATTTCGTGCG
GTCTGCTGGTAGTGCGCCACATTGGTTCTGGCCTACATTTTGTCGACCAA
CGTTGTCCCTTGACCCCCCCCCCTTGCCCACCGCGACCTTTGCCGGCACT
TACTCGTGAAAACAACCACCACAACACACGACGAACCCGCACGAACGTGT
TGTTATGCGTGCCTGAACACTGGGCAACAACCAGCGTCGGCACCGGGGTG
GCCACGTTAGCGTCGGGAGTCAACTACCTCCTGGTGTCCGGGCTGAAGCC
CAAGGGAAGGCTCGGCAAGCGGCTCATGATTCAGAGGGAAAACCTTCAGG
AGCGGTACCGAGAGAGGGAGGTGCTGGTCAGGGAGAGGATGGGGGTCGGG
CGGGAGCGCATGCGGGTCAGGAAGGTGCGCGTGTGCTGCCGCCGGCTGCG
TTGA back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1039:19952..25355-
>mRNA_E-siliculosus-1a_F_contig1039.302.1 ID=mRNA_E-siliculosus-1a_F_contig1039.302.1|Name=mRNA_E-siliculosus-1a_F_contig1039.302.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2598bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:19952..25355- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top