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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1503.2932.1 vs. uniprot
Match: D8LNB7_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB7_ECTSI) HSP 1 Score: 335 bits (860), Expect = 2.650e-102 Identity = 190/208 (91.35%), Postives = 191/208 (91.83%), Query Frame = 1
Query: 22 AETLMERWRARSVPVEEHFESLEPVLALREAMVRVLHHERPGVRSRRLVLRHLLDVSQSARRVGHHSIAQGALHRFLKVSRADVIVTPXXXXXXXXXXXXXXXXXXXXXHPALRPEDRASEAMRCRLAEARVSWGKGETDAALRAARAVATRLRARVGGGGGEGHEEQRLLSEALRFTGAWVSKTKSESSREILESYLNPAVEAALAG 645
AETLMERWRARSVPVEEHFESLEPVLALREAMVRVLHHERPGVRSRRLVLRHLLDVSQSARRVGHHSIAQGALHRFLKVSRADVI TPXXXXXXX H ALRPEDRASEAMRCRLAEARVSWGKGETD+ALRAARAVATRLRARVGGGGGEGHEEQRLLSEALR TGAWVSKTKSESSREILESYLNPAVEAALAG
Sbjct: 2750 AETLMERWRARSVPVEEHFESLEPVLALREAMVRVLHHERPGVRSRRLVLRHLLDVSQSARRVGHHSIAQGALHRFLKVSRADVIATPXXXXXXXS-------------HQALRPEDRASEAMRCRLAEARVSWGKGETDSALRAARAVATRLRARVGGGGGEGHEEQRLLSEALRLTGAWVSKTKSESSREILESYLNPAVEAALAG 2944
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 732 |
| Model size | 733 |
| Exons | 4 |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01001,ko03032,ko03400 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | T |
| EC | 2.7.11.1 |
| EggNOG OGs | KOG0892@1,KOG0892@2759 |
| EggNOG free text desc. | protein serine/threonine kinase activity |
| GOs | GO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000280,GO:0000706,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000729,GO:0000956,GO:0001541,GO:0001666,GO:0001756,GO:0001775,GO:0001894,GO:0001895,GO:0001932,GO:0001934,GO:0002200,GO:0002327,GO:0002329,GO:0002331,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002521,GO:0002562,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0003002,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006401,GO:0006402,GO:0006403,GO:0006464,GO:0006468,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006975,GO:0006977,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007095,GO:0007127,GO:0007131,GO:0007140,GO:0007143,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0007548,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0008219,GO:0008285,GO:0008334,GO:0008340,GO:0008406,GO:0008585,GO:0008610,GO:0008630,GO:0008654,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009410,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009994,GO:0010033,GO:0010165,GO:0010212,GO:0010243,GO:0010259,GO:0010332,GO:0010389,GO:0010468,GO:0010506,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010942,GO:0010948,GO:0010965,GO:0010972,GO:0012501,GO:0014070,GO:0014074,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016301,GO:0016303,GO:0016310,GO:0016444,GO:0016458,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019637,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030071,GO:0030097,GO:0030098,GO:0030154,GO:0030163,GO:0030183,GO:0030258,GO:0030330,GO:0030717,GO:0030888,GO:0030889,GO:0031000,GO:0031056,GO:0031058,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031347,GO:0031348,GO:0031399,GO:0031401,GO:0031503,GO:0031570,GO:0031571,GO:0031572,GO:0031577,GO:0031974,GO:0031981,GO:0032006,GO:0032007,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032210,GO:0032212,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032944,GO:0032945,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033127,GO:0033129,GO:0033151,GO:0033554,GO:0034350,GO:0034351,GO:0034397,GO:0034641,GO:0034645,GO:0034655,GO:0035004,GO:0035173,GO:0035264,GO:0035282,GO:0035556,GO:0035825,GO:0036092,GO:0036211,GO:0036270,GO:0036289,GO:0036293,GO:0040007,GO:0040029,GO:0042113,GO:0042127,GO:0042157,GO:0042159,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042770,GO:0042981,GO:0043009,GO:0043030,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043279,GO:0043412,GO:0043516,GO:0043517,GO:0043523,GO:0043525,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044783,GO:0044818,GO:0044819,GO:0044877,GO:0045017,GO:0045088,GO:0045132,GO:0045137,GO:0045141,GO:0045143,GO:0045321,GO:0045494,GO:0045786,GO:0045787,GO:0045814,GO:0045824,GO:0045839,GO:0045841,GO:0045892,GO:0045930,GO:0045934,GO:0045935,GO:0045937,GO:0046474,GO:0046483,GO:0046486,GO:0046488,GO:0046545,GO:0046649,GO:0046660,GO:0046700,GO:0046777,GO:0046834,GO:0046854,GO:0046983,GO:0047485,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048538,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048599,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048871,GO:0050000,GO:0050670,GO:0050672,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050864,GO:0050865,GO:0050866,GO:0050869,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051249,GO:0051250,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051321,GO:0051402,GO:0051409,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0052742,GO:0060249,GO:0060255,GO:0060322,GO:0060429,GO:0060548,GO:0061053,GO:0061458,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070482,GO:0070663,GO:0070664,GO:0070727,GO:0070997,GO:0071044,GO:0071156,GO:0071158,GO:0071173,GO:0071174,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071481,GO:0071500,GO:0071704,GO:0071840,GO:0072331,GO:0072359,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072425,GO:0072431,GO:0072434,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090220,GO:0090304,GO:0090399,GO:0090407,GO:0097190,GO:0097193,GO:0097694,GO:0097695,GO:0098813,GO:0104004,GO:0140013,GO:0140096,GO:1900034,GO:1901214,GO:1901215,GO:1901216,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901698,GO:1901796,GO:1901798,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902275,GO:1902400,GO:1902402,GO:1902403,GO:1902531,GO:1902532,GO:1902533,GO:1902679,GO:1902749,GO:1902750,GO:1902806,GO:1902807,GO:1903046,GO:1903047,GO:1903432,GO:1903506,GO:1903507,GO:1903624,GO:1903626,GO:1903978,GO:1904262,GO:1904353,GO:1904354,GO:1904356,GO:1904358,GO:1904882,GO:1904884,GO:1905269,GO:1905818,GO:1905819,GO:1905843,GO:1990164,GO:1990391,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000278,GO:2000573,GO:2000816,GO:2001020,GO:2001022,GO:2001141,GO:2001228,GO:2001251,GO:2001252 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| KEGG Module | M00295,M00691 |
| KEGG Pathway | ko01524,ko03440,ko04064,ko04068,ko04110,ko04115,ko04210,ko04214,ko04218,ko05165,ko05166,ko05202,ko05206,map01524,map03440,map04064,map04068,map04110,map04115,map04210,map04214,map04218,map05165,map05166,map05202,map05206 |
| KEGG ko | ko:K04728 |
| Preferred name | ATM |
| Seed eggNOG ortholog | 2880.D8LNB7 |
| Seed ortholog evalue | 5.5e-90 |
| Seed ortholog score | 337.4 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1503.2932.1 >prot_E-siliculosus-1a_F_contig1503.2932.1 ID=prot_E-siliculosus-1a_F_contig1503.2932.1|Name=mRNA_E-siliculosus-1a_F_contig1503.2932.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=244bp
RLRVCTQAETLMERWRARSVPVEEHFESLEPVLALREAMVRVLHHERPGV
RSRRLVLRHLLDVSQSARRVGHHSIAQGALHRFLKVSRADVIVTPPSSSA
SSHQATAADRRRRRRRHPALRPEDRASEAMRCRLAEARVSWGKGETDAAL
RAARAVATRLRARVGGGGGEGHEEQRLLSEALRFTGAWVSKTKSESSREI
LESYLNPAVEAALAGGGAALAAPGAAGAAGGGGGGGGGGGGGGG back to topmRNA from alignment at E-siliculosus-1a_F_contig1503:28956..31680+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1503.2932.1 ID=mRNA_E-siliculosus-1a_F_contig1503.2932.1|Name=mRNA_E-siliculosus-1a_F_contig1503.2932.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2725bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1503:28956..31680+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGCTTCGTGTGTGCACCCAGGCGGAGACCCTGATGGAACGGTGGCGCGC
CCGGTCCGTACCCGTTGAGGAGCACTTCGAGTCGCTGGAGCCCGTCTTGG
CACTTAGGTACATGTCGCAGGCGTGCGTGTGTCTCCCGACAGTCACTTGT
CATTCCCTTCGAGGAGAAGGGGGAGGAAGGGTTGTATCCATGTCAAGGCA
TGCGGTAGTCGGTAATGTAAGCGCGTGCGGGAGTCGGTAGACCATAGACC
TCGCATCCCTGCAACGCCGGAGAAGGGAGCCGAACATATAGCACCAGAGG
TGTTGGGGATCCTTCGCACCACGGCGTACGTGCGTGTGGCTTGTGTTGGG
GCGGGCCGACGGTATCAGGAAGGAACCCTCTAGTGGAACCTTTGCGCTAG
CTAGAGCATCTCACCCACCAATGCGCCAGGAACATTACCAACGCCTGGGT
TCCAACAACTGAAAAAGCAACCATGGATGATGGATACGAAGGTGTTTACC
TCTCCCGCCCCCCGGCCGTCGCCGTCCCGAACCATGTGCTGGCGTGCTTC
TTTTTTTTTTTTTCGTTATGGTTTGCGTCGTGGAGGGAGGCGATGGTAAG
GGTTCTGCACCACGAGAGGCCTGGGGTGCGCAGCCGGCGCTTGGTGTTGC
GACACCTCCTTGACGTGTCTCAGTCCGCTAGGAGGGTCGGGCACCACTCT
ATCGCGCAGGTGTGGTGATGGGGGTCCGTCTGGCGTGTTGTTTGCGACCA
TCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATTTCCGT
TGCCAACTCGAACGACATCGAGATATGGAGACAGACAGACAGAGAGGCAG
AGAGGCACAGAGAGAGAGAGGGGGGGGGGGGGGTACTCATAGTCGTGCAT
GCCGTAGTCGTTAGACCATTGACCTCGCATCCCTACAAAGCCGGGACGGA
GCACGCCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGAAGC
GCCGTGAGGTATTCGGCCAGTCGCATGAAGGGTGCGCTGCATCCTGCTAA
GGGTGTTCGGCATCTTGTGCTTACTTCCTTGCGTACGGATGACAGCCGCG
TATGACTTAATTTATTTTCTGGTGCCTTCACTTCCGGAGACAGTTGTAAG
CACTGTGTAACTGCCTCGAGGATGCTTGACCATTTTAACACAACGTGGTG
CGATCATCCCCCTTGCACGGAGTGAGGTTTCTCCACCCCGCACAACATGA
TCTACTCGACCACCATTATGGTTACCGCCAAAAAAAAACACCAGAGGTAA
AAAAAAAAACGGTAACCTGGTTGTCGAGTTCACGATGTGACTTGGCATCT
TTTACAACGTCGTTGCCAAGCGACGAAAACCCAACCCCGATGGCAAACAC
CGGGGGGGAGAGGGAGAAGCACACACGCTCGCTGACATGGCGCTGTCACC
CCCCCAACACGAACCTCACGGCACCTCTGTGCTACGTAGGTGTGTCTCCT
CCGATATCACTGCACGACCACGATGAACCGAAAATAAAAGGGATATGGAC
AAGAGCATCAAGACCTAAACACCACTACTGATAAGGAACGAATACCCCAA
CTTCGAACTACTCCCCCTTGGAAGCAACGATTTGGCCTTCGGTGATCGGT
GCTGTGGGAGCAGTGCTCCGTCCCTCGAGCACGCGTGGTCTAACAGCTGC
TAAGCATGACTACCGTACGCCCCCCCCCTTGACATCTTCTTCCTTGTTTT
TCAGGGTGCTCTTCACCGTTTCCTCAAAGTCAGCCGCGCGGACGTCATTG
TCACCCCTCCATCGTCGTCGGCGTCGTCTCACCAAGCCACCGCCGCCGAC
CGCAGGAGGCGGCGCCGCCGCCACCCAGCCCTTCGGCCCGAGGACCGAGC
CTCCGAGGCCATGCGATGCCGCCTTGCGGAGGCCCGCGTTTCGTGGGGGA
AGGGGGAGACCGACGCCGCCCTGCGGGCGGCGCGGGCGGTGGCGACACGC
CTAAGGGCTCGCGTTGGCGGTGGGGGGGGGGAGGGGCATGAAGAACAGCG
TCTTTTGTCGGAGGTGTGTGTGTCTTTATTGTTAGCATCGACCGCGCCAA
CCGGCTGACCAAATGAAAAGACGTCAGTCGTAGTGCGGTTGAAAACACAA
ACACTTCTATCTGTGAGGTGTGTGTGTGTCTTTATTGTTAGCATCGACCG
CGCTAACCGGCTGACCAAATGAAAAGACGTCAGTCGTAGTGCGGTTGAAA
ACACAAAACGCTTCTATCTGCCATGAACTGCTGGTGTGTGTGTGTGTGTG
TGGGCTTGGCGTGGGTGCCCTTGGTGCGGGAGTTTCGTGGTTGGGGATAT
TCACATACGTGTTAAGAGTGTTTTTGTTGTTGGGGATCGTTGTTTGAGTG
CCAGCCATGCCTGCCGAGAACGCGCGAGTGTGCGCCATCAACAATCGACC
TATTGTGATAGTGCACGAACGATAGAACGATAGAACGAACGGACGAACAG
AGCCAGCCGTCGTTGCCGCCGCTTCCCTTCCAGGCGCTGCGCTTCACCGG
GGCGTGGGTCTCCAAGACCAAGAGCGAGAGCAGCCGGGAGATCCTAGAGT
CCTACCTCAACCCCGCGGTCGAGGCCGCGCTAGCCGGCGGCGGGGCGGCG
TTAGCCGCCCCCGGCGCCGCAGGCGCCGCAGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1503:28956..31680+ >mRNA_E-siliculosus-1a_F_contig1503.2932.1 ID=mRNA_E-siliculosus-1a_F_contig1503.2932.1|Name=mRNA_E-siliculosus-1a_F_contig1503.2932.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1464bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1503:28956..31680+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGCTTCGTGTGTGCACCCAGGCGGAGACCCTGATGGAACGGTGGCGCGC
CCGGTCCGTACCCGTTGAGGAGCACTTCGAGTCGCTGGAGCCCGTCTTGG
CACTTAGCGGCTTCGTGTGTGCACCCAGGCGGAGACCCTGATGGAACGGT
GGCGCGCCCGGTCCGTACCCGTTGAGGAGCACTTCGAGTCGCTGGAGCCC
GTCTTGGCACTTAGGGAGGCGATGGTAAGGGTTCTGCACCACGAGAGGCC
TGGGGTGCGCAGCCGGCGCTTGGTGTTGCGACACCTCCTTGACGTGTCTC
AGTCCGCTAGGAGGGTCGGGCACCACTCTATCGCGCAGGGAGGCGATGGT
AAGGGTTCTGCACCACGAGAGGCCTGGGGTGCGCAGCCGGCGCTTGGTGT
TGCGACACCTCCTTGACGTGTCTCAGTCCGCTAGGAGGGTCGGGCACCAC
TCTATCGCGCAGGGTGCTCTTCACCGTTTCCTCAAAGTCAGCCGCGCGGA
CGTCATTGTCACCCCTCCATCGTCGTCGGCGTCGTCTCACCAAGCCACCG
CCGCCGACCGCAGGAGGCGGCGCCGCCGCCACCCAGCCCTTCGGCCCGAG
GACCGAGCCTCCGAGGCCATGCGATGCCGCCTTGCGGAGGCCCGCGTTTC
GTGGGGGAAGGGGGAGACCGACGCCGCCCTGCGGGCGGCGCGGGCGGTGG
CGACACGCCTAAGGGCTCGCGTTGGCGGTGGGGGGGGGGAGGGGCATGAA
GAACAGCGTCTTTTGTCGGAGGGTGCTCTTCACCGTTTCCTCAAAGTCAG
CCGCGCGGACGTCATTGTCACCCCTCCATCGTCGTCGGCGTCGTCTCACC
AAGCCACCGCCGCCGACCGCAGGAGGCGGCGCCGCCGCCACCCAGCCCTT
CGGCCCGAGGACCGAGCCTCCGAGGCCATGCGATGCCGCCTTGCGGAGGC
CCGCGTTTCGTGGGGGAAGGGGGAGACCGACGCCGCCCTGCGGGCGGCGC
GGGCGGTGGCGACACGCCTAAGGGCTCGCGTTGGCGGTGGGGGGGGGGAG
GGGCATGAAGAACAGCGTCTTTTGTCGGAGGCGCTGCGCTTCACCGGGGC
GTGGGTCTCCAAGACCAAGAGCGAGAGCAGCCGGGAGATCCTAGAGTCCT
ACCTCAACCCCGCGGTCGAGGCCGCGCTAGCCGGCGGCGGGGCGGCGTTA
GCCGCCCCCGGCGCCGCAGGCGCCGCAGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGCGCTGCGCTTCACCGGGGCGTGGGTCT
CCAAGACCAAGAGCGAGAGCAGCCGGGAGATCCTAGAGTCCTACCTCAAC
CCCGCGGTCGAGGCCGCGCTAGCCGGCGGCGGGGCGGCGTTAGCCGCCCC
CGGCGCCGCAGGCGCCGCAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGGC back to top
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