prot_E-siliculosus-1a_F_contig1038.292.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1038.292.1
Unique Nameprot_E-siliculosus-1a_F_contig1038.292.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length226
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1038.292.1 vs. uniprot
Match: D8LEX3_ECTSI (PRA1 family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEX3_ECTSI)

HSP 1 Score: 431 bits (1109), Expect = 1.350e-152
Identity = 221/225 (98.22%), Postives = 222/225 (98.67%), Query Frame = 0
Query:    1 MPEPQLRRRPVGSGSRGSAPPRPNAANPNQAVALAVLSELGAMMELFFKGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQAGFTIENAQNFVENVFGITGSRSQ 225
            MPEPQLRRRPVGSGSRGSAPPRPN AN NQAVALAVLSELGAMMELFFKGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQAGFTIENAQNF EN+FGITGSRSQ
Sbjct:    1 MPEPQLRRRPVGSGSRGSAPPRPNVANQNQAVALAVLSELGAMMELFFKGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQAGFTIENAQNFAENIFGITGSRSQ 225          
BLAST of mRNA_E-siliculosus-1a_F_contig1038.292.1 vs. uniprot
Match: A0A835Z7M0_9STRA (PRA1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M0_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.560e-34
Identity = 72/154 (46.75%), Postives = 92/154 (59.74%), Query Frame = 0
Query:   49 KGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQA 202
            + L  + M+ WGEFF +FK PRAW  +VLDER+TTN LHYRGNY  V  G ++V I+S+P +LL       LL FLFPT    RAV V  R +   ER   A++    +L  TGA   LL+  G     CL H VFRPR++ SK +R   EA+A
Sbjct:   40 QSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARA 193          
BLAST of mRNA_E-siliculosus-1a_F_contig1038.292.1 vs. uniprot
Match: A0A7S2UXU1_9STRA (PRA1 family protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXU1_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.780e-30
Identity = 68/162 (41.98%), Postives = 90/162 (55.56%), Query Frame = 0
Query:   49 KGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQAGFTIENAQ 210
            K   LK M+ WGEFFARFK P+ W+   L++R+ TN+LHYRGNY  V   + ++ ++  P + L L  C      L P     R VRVG R L R E L  A IG+  +L  +G  Y LL     G  +C+ H V RPR++GSKT+R   EA+ GF     Q
Sbjct:   21 KQFGLKSMQPWGEFFARFKPPKRWDQTSLEQRINTNYLHYRGNYLFVMVAVTLLHVVLAPVMALVLAVCVCGFILLAPPSG--REVRVGQRLLSRNEGLVLASIGSLALLLWSGTLYRLLMVLSLGFAVCVAHMVLRPRTLGSKTNRFMEEAKVGFAQAQQQ 180          
BLAST of mRNA_E-siliculosus-1a_F_contig1038.292.1 vs. uniprot
Match: A0A482SWI0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWI0_9ARCH)

HSP 1 Score: 83.6 bits (205), Expect = 5.760e-16
Identity = 54/157 (34.39%), Postives = 93/157 (59.24%), Query Frame = 0
Query:   54 KEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYIL---LFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQA-GFTI 206
            KEMK W EFFA FK P+ ++++ L++R+TTNFLHYR NY  ++ G+L++ I++NP ++L+ +    + T++      R+   +GD + +   +       ++ IL  TG    L   LFY    +L+C +H + RPRS+ SK +R   E +  G+++
Sbjct:   31 KEMKPWSEFFATFKPPQ-FDSRHLEQRITTNFLHYRSNYLAISLGILILQILTNPVIILSSVAIFGICTYVLQVH--RKPFIIGDFSFDGVGKQYLCAGLSAIILFATGTVVKLCWCLFYI---ILVCGIHMLLRPRSVSSKANRMYEEMKLKGYSV 181          
BLAST of mRNA_E-siliculosus-1a_F_contig1038.292.1 vs. uniprot
Match: A0A7S1TSJ8_9STRA (PRA1 family protein n=5 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSJ8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.410e-5
Identity = 54/185 (29.19%), Postives = 84/185 (45.41%), Query Frame = 0
Query:   36 VLSEL--GAMMELFFKGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQAGFTIENAQNFVENVFG 218
            VL EL  GA+     K + ++E   WGEF      P+ +N  V+ +R+T NFL++RGNY   AA ++++ ++ +P  +  L+  AL L  L  T      + V    L+ + R     +    +  +TGA   LL        L   H V        K+  AAA A A    E  +  +E+V G
Sbjct:   15 VLEELREGAVQ---LKAIGIREPAPWGEFLDDLAVPQDFNAAVVKQRITQNFLYFRGNYMACAAVVVLLFVLMSPTTIFVLVLAALGLVALQATRNS--PIVVQGTNLDFKTRAILFGVATFLLAVITGALGTLLLSLSVAGTLATAHMV-------CKSPSAAARANAR---EEERALMEDVEG 184          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1038.292.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LEX3_ECTSI1.350e-15298.22PRA1 family protein n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835Z7M0_9STRA2.560e-3446.75PRA1 family protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2UXU1_9STRA1.780e-3041.98PRA1 family protein n=2 Tax=Fibrocapsa japonica Ta... [more]
A0A482SWI0_9ARCH5.760e-1634.39Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1TSJ8_9STRA1.410e-529.19PRA1 family protein n=5 Tax=Phaeomonas parva TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 224..225
NoneNo IPR availablePANTHERPTHR19317:SF0PRENYLATED RAB ACCEPTOR PROTEIN 1coord: 54..192
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 94..127
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 181..225
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 147..180
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 49..93
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 128..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..48
NoneNo IPR availableTMHMMTMhelixcoord: 162..184
NoneNo IPR availableTMHMMTMhelixcoord: 94..125
IPR004895Prenylated rab acceptor PRA1PFAMPF03208PRA1coord: 52..193
e-value: 1.7E-28
score: 99.1
IPR004895Prenylated rab acceptor PRA1PANTHERPTHR19317PRENYLATED RAB ACCEPTOR 1-RELATEDcoord: 54..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1038contigE-siliculosus-1a_F_contig1038:7282..11111 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1038.292.1mRNA_E-siliculosus-1a_F_contig1038.292.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1038 7245..12347 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1038.292.1 ID=prot_E-siliculosus-1a_F_contig1038.292.1|Name=mRNA_E-siliculosus-1a_F_contig1038.292.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=226bp
MPEPQLRRRPVGSGSRGSAPPRPNAANPNQAVALAVLSELGAMMELFFKG
LRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLL
VVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAA
VIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEA
QAGFTIENAQNFVENVFGITGSRSQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004895Prenylated_rab_accept_PRA1