mRNA_E-siliculosus-1a_F_contig1038.292.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1038.292.1 vs. uniprot
Match: D8LEX3_ECTSI (PRA1 family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEX3_ECTSI) HSP 1 Score: 432 bits (1112), Expect = 2.060e-146 Identity = 221/225 (98.22%), Postives = 222/225 (98.67%), Query Frame = 2 Query: 38 MPEPQLRRRPVGSGSRGSAPPRPNAANPNQAVALAVLSELGAMMELFFKGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQAGFTIENAQNFVENVFGITGSRSQ 712
MPEPQLRRRPVGSGSRGSAPPRPN AN NQAVALAVLSELGAMMELFFKGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQAGFTIENAQNF EN+FGITGSRSQ
Sbjct: 1 MPEPQLRRRPVGSGSRGSAPPRPNVANQNQAVALAVLSELGAMMELFFKGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQAGFTIENAQNFAENIFGITGSRSQ 225
BLAST of mRNA_E-siliculosus-1a_F_contig1038.292.1 vs. uniprot
Match: A0A835Z7M0_9STRA (PRA1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M0_9STRA) HSP 1 Score: 132 bits (333), Expect = 1.420e-31 Identity = 83/200 (41.50%), Postives = 112/200 (56.00%), Query Frame = 2 Query: 50 QLRRR--PVGSGSRGSAPPRPNAANPNQAVALAVLSELGAMMELFFKGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQA 643
+LRRR +G+R S P A+P + + L + + ++ L + M+ WGEFF +FK PRAW +VLDER+TTN LHYRGNY V G ++V I+S+P +LL LL FLFPT RAV V R + ER A++ +L TGA LL+ G CL H VFRPR++ SK +R EA+A
Sbjct: 3 ELRRRFQAEAAGARQS----PGTADPGSGI-MGELQSIASELQ----SLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARA 193
BLAST of mRNA_E-siliculosus-1a_F_contig1038.292.1 vs. uniprot
Match: A0A7S2UXU1_9STRA (PRA1 family protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXU1_9STRA) HSP 1 Score: 120 bits (301), Expect = 1.060e-27 Identity = 68/162 (41.98%), Postives = 90/162 (55.56%), Query Frame = 2 Query: 182 KGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQAGFTIENAQ 667
K LK M+ WGEFFARFK P+ W+ L++R+ TN+LHYRGNY V + ++ ++ P + L L C L P R VRVG R L R E L A IG+ +L +G Y LL G +C+ H V RPR++GSKT+R EA+ GF Q
Sbjct: 21 KQFGLKSMQPWGEFFARFKPPKRWDQTSLEQRINTNYLHYRGNYLFVMVAVTLLHVVLAPVMALVLAVCVCGFILLAPPSG--REVRVGQRLLSRNEGLVLASIGSLALLLWSGTLYRLLMVLSLGFAVCVAHMVLRPRTLGSKTNRFMEEAKVGFAQAQQQ 180
BLAST of mRNA_E-siliculosus-1a_F_contig1038.292.1 vs. uniprot
Match: A0A482SWI0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWI0_9ARCH) HSP 1 Score: 83.6 bits (205), Expect = 1.900e-14 Identity = 54/157 (34.39%), Postives = 93/157 (59.24%), Query Frame = 2 Query: 197 KEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYIL---LFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQA-GFTI 655
KEMK W EFFA FK P+ ++++ L++R+TTNFLHYR NY ++ G+L++ I++NP ++L+ + + T++ R+ +GD + + + ++ IL TG L LFY +L+C +H + RPRS+ SK +R E + G+++
Sbjct: 31 KEMKPWSEFFATFKPPQ-FDSRHLEQRITTNFLHYRSNYLAISLGILILQILTNPVIILSSVAIFGICTYVLQVH--RKPFIIGDFSFDGVGKQYLCAGLSAIILFATGTVVKLCWCLFYI---ILVCGIHMLLRPRSVSSKANRMYEEMKLKGYSV 181
BLAST of mRNA_E-siliculosus-1a_F_contig1038.292.1 vs. uniprot
Match: A0A7S1TSJ8_9STRA (PRA1 family protein n=5 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSJ8_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.490e-5 Identity = 59/203 (29.06%), Postives = 90/203 (44.33%), Query Frame = 2 Query: 143 VLSEL--GAMMELFFKGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQAGFTIENAQNFVENVFGITGSRSQ*RPERVDVVRA 745
VL EL GA+ K + ++E WGEF P+ +N V+ +R+T NFL++RGNY AA ++++ ++ +P + L+ AL L L T + V L+ + R + + +TGA LL L H V K+ AAA A A E + +E+V G + RV VRA
Sbjct: 15 VLEELREGAVQ---LKAIGIREPAPWGEFLDDLAVPQDFNAAVVKQRITQNFLYFRGNYMACAAVVVLLFVLMSPTTIFVLVLAALGLVALQATRNS--PIVVQGTNLDFKTRAILFGVATFLLAVITGALGTLLLSLSVAGTLATAHMV-------CKSPSAAARANAR---EEERALMEDVEGGGAAAGSPSSLRVRAVRA 202 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1038.292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1038.292.1 >prot_E-siliculosus-1a_F_contig1038.292.1 ID=prot_E-siliculosus-1a_F_contig1038.292.1|Name=mRNA_E-siliculosus-1a_F_contig1038.292.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=226bp MPEPQLRRRPVGSGSRGSAPPRPNAANPNQAVALAVLSELGAMMELFFKGback to top mRNA from alignment at E-siliculosus-1a_F_contig1038:7245..12347+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1038.292.1 ID=mRNA_E-siliculosus-1a_F_contig1038.292.1|Name=mRNA_E-siliculosus-1a_F_contig1038.292.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5103bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1038:7245..12347+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1038:7245..12347+ >mRNA_E-siliculosus-1a_F_contig1038.292.1 ID=mRNA_E-siliculosus-1a_F_contig1038.292.1|Name=mRNA_E-siliculosus-1a_F_contig1038.292.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1356bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1038:7245..12347+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |