prot_E-siliculosus-1a_F_contig1038.291.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1038.291.1
Unique Nameprot_E-siliculosus-1a_F_contig1038.291.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length363
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1038.291.1 vs. uniprot
Match: A0A6H5L0R8_9PHAE (ARID domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R8_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 6.750e-86
Identity = 164/181 (90.61%), Postives = 164/181 (90.61%), Query Frame = 0 
Query:    1 MDERAVVALESLYSGPIKARELVRAREIFAFLRSNGQRAVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQARQVHFPSRSSAGQXXXXXXXXXXXXXXXXXXXXVVPPMGRDQQHAG---VGTQRYEQHGHYQRQMRQRELEQ 178
            MDERAV ALESLYSGPIKARELVRAREIFAFLRSNGQ  VLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQ   VHFPSRSSAGQ  XXXXXXXXXXXXXX    VVPPMGRDQ HAG   VGTQRYEQHGHYQ QMRQRELEQ
Sbjct:    1 MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGTVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQ---VHFPSRSSAGQHQXXXXXXXXXXXXXX----VVPPMGRDQ-HAGMSGVGTQRYEQHGHYQGQMRQRELEQ 173
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BLAST of mRNA_E-siliculosus-1a_F_contig1038.291.1 vs. uniprot
Match: D8LEX2_ECTSI (ARID/BRIGHT DNA binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX2_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 1.300e-73
Identity = 132/178 (74.16%), Postives = 132/178 (74.16%), Query Frame = 0 
Query:    1 MDERAVVALESLYSGPIKARELVRAREIFAFLRSNGQRAVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQARQVHFPSRSSAGQXXXXXXXXXXXXXXXXXXXXVVPPMGRDQQHAGVGTQRYEQHGHYQRQMRQRELEQ 178
            MDERAV ALESLYSGPIKA ELVRAREIFAFLR NGQ AVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQAR                                          HAGVGTQRYEQHGHYQRQMRQRELEQ
Sbjct:    1 MDERAVAALESLYSGPIKAGELVRAREIFAFLRGNGQGAVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQAR------------------------------------------HAGVGTQRYEQHGHYQRQMRQRELEQ 136
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1038.291.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0R8_9PHAE6.750e-8690.61ARID domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LEX2_ECTSI1.300e-7374.16ARID/BRIGHT DNA binding domain containing protein ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 120..142
NoneNo IPR availableCOILSCoilCoilcoord: 226..247
NoneNo IPR availableCOILSCoilCoilcoord: 189..223
NoneNo IPR availableSMARTSM01014ARID_2coord: 20..107
e-value: 5.2E-10
score: 49.3
NoneNo IPR availablePANTHERPTHR15348AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHTcoord: 27..300
IPR001606ARID DNA-binding domainSMARTSM00501bright_3coord: 19..112
e-value: 1.3E-4
score: 28.4
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 28..107
e-value: 2.1E-11
score: 44.3
IPR001606ARID DNA-binding domainPROSITEPS51011ARIDcoord: 18..111
score: 18.924
IPR036431ARID DNA-binding domain superfamilyGENE3D1.10.150.60coord: 9..140
e-value: 5.3E-17
score: 63.4
IPR036431ARID DNA-binding domain superfamilySUPERFAMILY46774ARID-likecoord: 28..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1038contigE-siliculosus-1a_F_contig1038:563..7093 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1038.291.1mRNA_E-siliculosus-1a_F_contig1038.291.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1038 563..7125 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1038.291.1 ID=prot_E-siliculosus-1a_F_contig1038.291.1|Name=mRNA_E-siliculosus-1a_F_contig1038.291.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=363bp
MDERAVVALESLYSGPIKARELVRAREIFAFLRSNGQRAVLRDVPMVNGK
LLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYK
NFLYGFEQARQVHFPSRSSAGQQQQQQQQQQQQQQQQQQQEDVVPPMGRD
QQHAGVGTQRYEQHGHYQRQMRQRELEQQEQQSRQQRHVEQMTQQQEHHQ
RKLLEQQQQQQQQRKLLEQQQQQRFMIRQQQQQQQQQQQQQQAEQEMLLK
QPQSHHHQQQYISQQQQRQQQQQQHARQQAIYQAQQQQQQQQHHHRMQQS
GYLSSSSGGGGGGGGRHGDSYSRGGGAYPSHDSYRSRGPSHGGGVGVSAS
IPRADVSLRTYC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036431ARID_dom_sf
IPR001606ARID_dom