mRNA_E-siliculosus-1a_F_contig1038.291.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1038.291.1 vs. uniprot
Match: A0A6H5L0R8_9PHAE (ARID domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R8_9PHAE) HSP 1 Score: 266 bits (679), Expect = 1.890e-85 Identity = 164/181 (90.61%), Postives = 164/181 (90.61%), Query Frame = 3 Query: 33 MDERAVVALESLYSGPIKARELVRAREIFAFLRSNGQRAVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQARQVHFPSRSSAGQXXXXXXXXXXXXXXXXXXXXVVPPMGRDQQHAG---VGTQRYEQHGHYQRQMRQRELEQ 566
MDERAV ALESLYSGPIKARELVRAREIFAFLRSNGQ VLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQ VHFPSRSSAGQ XXXXXXXXXXXXXX VVPPMGRDQ HAG VGTQRYEQHGHYQ QMRQRELEQ
Sbjct: 1 MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGTVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQ---VHFPSRSSAGQHQXXXXXXXXXXXXXX----VVPPMGRDQ-HAGMSGVGTQRYEQHGHYQGQMRQRELEQ 173
BLAST of mRNA_E-siliculosus-1a_F_contig1038.291.1 vs. uniprot
Match: D8LEX2_ECTSI (ARID/BRIGHT DNA binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX2_ECTSI) HSP 1 Score: 235 bits (600), Expect = 3.570e-73 Identity = 132/178 (74.16%), Postives = 132/178 (74.16%), Query Frame = 3 Query: 33 MDERAVVALESLYSGPIKARELVRAREIFAFLRSNGQRAVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQARQVHFPSRSSAGQXXXXXXXXXXXXXXXXXXXXVVPPMGRDQQHAGVGTQRYEQHGHYQRQMRQRELEQ 566
MDERAV ALESLYSGPIKA ELVRAREIFAFLR NGQ AVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQAR HAGVGTQRYEQHGHYQRQMRQRELEQ
Sbjct: 1 MDERAVAALESLYSGPIKAGELVRAREIFAFLRGNGQGAVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQAR------------------------------------------HAGVGTQRYEQHGHYQRQMRQRELEQ 136 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1038.291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1038.291.1 >prot_E-siliculosus-1a_F_contig1038.291.1 ID=prot_E-siliculosus-1a_F_contig1038.291.1|Name=mRNA_E-siliculosus-1a_F_contig1038.291.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=363bp MDERAVVALESLYSGPIKARELVRAREIFAFLRSNGQRAVLRDVPMVNGKback to top mRNA from alignment at E-siliculosus-1a_F_contig1038:563..7125- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1038.291.1 ID=mRNA_E-siliculosus-1a_F_contig1038.291.1|Name=mRNA_E-siliculosus-1a_F_contig1038.291.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6563bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1038:563..7125- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1038:563..7125- >mRNA_E-siliculosus-1a_F_contig1038.291.1 ID=mRNA_E-siliculosus-1a_F_contig1038.291.1|Name=mRNA_E-siliculosus-1a_F_contig1038.291.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2178bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1038:563..7125- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |