mRNA_E-siliculosus-1a_F_contig14889.2842.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: A0A6H5JN44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN44_9PHAE) HSP 1 Score: 122 bits (307), Expect = 7.640e-32 Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 1
Query: 4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSRY 192
GFYAG VSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTT VSLTFGLSTKYWVALSSR+
Sbjct: 25 GFYAGVVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTTVSLTFGLSTKYWVALSSRF 87
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: D8LJK9_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK9_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 3.910e-20 Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1
Query: 4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSRY 192
GFYAG V+ AFTLGRFLSGY WG+VSDS GR+ VI++GL T ++SLTFGLST Y VA+SSR+
Sbjct: 7 GFYAGYVAGAFTLGRFLSGYLWGYVSDSVGRRPVILVGLSATAVLSLTFGLSTTYEVAISSRF 69
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: A0A6H5K5T8_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T8_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.980e-19 Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1
Query: 1 AGFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSR 189
AGFYAG V+SAFT GRFLSGY WGHV+DS GRK VI++GL++ I SLTFGLST Y A+SSR
Sbjct: 76 AGFYAGYVASAFTFGRFLSGYAWGHVTDSAGRKPVIVLGLMSIIIFSLTFGLSTSYAWAVSSR 138
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: D8LJX6_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX6_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 2.960e-19 Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 1
Query: 1 AGFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSR 189
AG+YAG V+SAFT GRFLSGY WG+V+DS GRK VI++GL++ I SL FGLST Y A+SSR
Sbjct: 77 AGYYAGYVASAFTFGRFLSGYAWGYVTDSAGRKPVIVLGLMSMIIFSLAFGLSTSYAWAVSSR 139
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: D8LET2_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET2_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 1.060e-18 Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1
Query: 4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSRY 192
GFYAG V+SA+ LG FLSGY WG+ SDS GRK VI++GLL ++SLTFGLST Y +A+SSR+
Sbjct: 61 GFYAGYVASAYMLGHFLSGYLWGYASDSVGRKPVILVGLLAVAVLSLTFGLSTTYELAISSRF 123
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: A0A6H5JAX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAX4_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 3.250e-18 Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1
Query: 4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSRY 192
GFY G V+ AFTLGR LSGY WG+VSDS GR+ VI++GL T ++SLTFGLST Y +A+SSR+
Sbjct: 7 GFYTGYVAGAFTLGRLLSGYLWGYVSDSVGRRPVILVGLSATAVLSLTFGLSTTYELAISSRW 69
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: D7G0L9_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L9_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 5.530e-15 Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1
Query: 4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSR 189
GFYAG V+S+FT GRFLSGYFWG V+D GRK VII+GLL+ S+ FG+S Y +A+++R
Sbjct: 31 GFYAGYVASSFTFGRFLSGYFWGFVTDRLGRKPVIIMGLLSMITFSVLFGISRSYTMAITTR 92
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: A0A2H9ZZH4_9ASPA (Putative peptide/nitrate transporter n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZZH4_9ASPA) HSP 1 Score: 76.6 bits (187), Expect = 7.980e-15 Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSRY 192
GFYAG V S+F LGR L+ FWG ++D GRK VI+IGL+T I + FGLST+YW+A+ +R+
Sbjct: 96 GFYAGFVGSSFMLGRALTSVFWGMIADRYGRKPVIVIGLITLVIFNTLFGLSTRYWMAIGTRF 158
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: A0A6H5JRQ3_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ3_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 7.990e-15 Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1
Query: 4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSR 189
GFYAG V+S+FT GRFLSGYFWG V+D GRK VII+GLL+ S+ FG+S Y +A+++R
Sbjct: 147 GFYAGYVASSFTFGRFLSGYFWGFVTDRFGRKPVIIMGLLSMITFSVLFGISRSYTMAITTR 208
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: UPI00053AB22C (probable peptide/nitrate transporter At3g43790 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053AB22C) HSP 1 Score: 70.9 bits (172), Expect = 3.600e-14 Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 1
Query: 4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSRY 192
GFYAG V S+F +GR L+ FWG ++D GRK +I+IG + I + FGLST +W+A+SSR+
Sbjct: 37 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAISSRF 99 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14889.2842.1 >prot_E-siliculosus-1a_F_contig14889.2842.1 ID=prot_E-siliculosus-1a_F_contig14889.2842.1|Name=mRNA_E-siliculosus-1a_F_contig14889.2842.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=64bp AGFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFback to top mRNA from alignment at E-siliculosus-1a_F_contig14889:839..1030+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14889.2842.1 ID=mRNA_E-siliculosus-1a_F_contig14889.2842.1|Name=mRNA_E-siliculosus-1a_F_contig14889.2842.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=192bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14889:839..1030+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14889:839..1030+ >mRNA_E-siliculosus-1a_F_contig14889.2842.1 ID=mRNA_E-siliculosus-1a_F_contig14889.2842.1|Name=mRNA_E-siliculosus-1a_F_contig14889.2842.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14889:839..1030+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |