mRNA_E-siliculosus-1a_F_contig14889.2842.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14889.2842.1
Unique NamemRNA_E-siliculosus-1a_F_contig14889.2842.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: A0A6H5JN44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN44_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 7.640e-32
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 1
Query:    4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSRY 192
            GFYAG VSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTT VSLTFGLSTKYWVALSSR+
Sbjct:   25 GFYAGVVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTTVSLTFGLSTKYWVALSSRF 87          
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: D8LJK9_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK9_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 3.910e-20
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1
Query:    4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSRY 192
            GFYAG V+ AFTLGRFLSGY WG+VSDS GR+ VI++GL  T ++SLTFGLST Y VA+SSR+
Sbjct:    7 GFYAGYVAGAFTLGRFLSGYLWGYVSDSVGRRPVILVGLSATAVLSLTFGLSTTYEVAISSRF 69          
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: A0A6H5K5T8_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.980e-19
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 AGFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSR 189
            AGFYAG V+SAFT GRFLSGY WGHV+DS GRK VI++GL++  I SLTFGLST Y  A+SSR
Sbjct:   76 AGFYAGYVASAFTFGRFLSGYAWGHVTDSAGRKPVIVLGLMSIIIFSLTFGLSTSYAWAVSSR 138          
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: D8LJX6_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX6_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.960e-19
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    1 AGFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSR 189
            AG+YAG V+SAFT GRFLSGY WG+V+DS GRK VI++GL++  I SL FGLST Y  A+SSR
Sbjct:   77 AGYYAGYVASAFTFGRFLSGYAWGYVTDSAGRKPVIVLGLMSMIIFSLAFGLSTSYAWAVSSR 139          
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: D8LET2_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET2_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.060e-18
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSRY 192
            GFYAG V+SA+ LG FLSGY WG+ SDS GRK VI++GLL   ++SLTFGLST Y +A+SSR+
Sbjct:   61 GFYAGYVASAYMLGHFLSGYLWGYASDSVGRKPVILVGLLAVAVLSLTFGLSTTYELAISSRF 123          
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: A0A6H5JAX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAX4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.250e-18
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSRY 192
            GFY G V+ AFTLGR LSGY WG+VSDS GR+ VI++GL  T ++SLTFGLST Y +A+SSR+
Sbjct:    7 GFYTGYVAGAFTLGRLLSGYLWGYVSDSVGRRPVILVGLSATAVLSLTFGLSTTYELAISSRW 69          
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: D7G0L9_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L9_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 5.530e-15
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSR 189
            GFYAG V+S+FT GRFLSGYFWG V+D  GRK VII+GLL+    S+ FG+S  Y +A+++R
Sbjct:   31 GFYAGYVASSFTFGRFLSGYFWGFVTDRLGRKPVIIMGLLSMITFSVLFGISRSYTMAITTR 92          
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: A0A2H9ZZH4_9ASPA (Putative peptide/nitrate transporter n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZZH4_9ASPA)

HSP 1 Score: 76.6 bits (187), Expect = 7.980e-15
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSRY 192
            GFYAG V S+F LGR L+  FWG ++D  GRK VI+IGL+T  I +  FGLST+YW+A+ +R+
Sbjct:   96 GFYAGFVGSSFMLGRALTSVFWGMIADRYGRKPVIVIGLITLVIFNTLFGLSTRYWMAIGTRF 158          
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: A0A6H5JRQ3_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ3_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.990e-15
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSR 189
            GFYAG V+S+FT GRFLSGYFWG V+D  GRK VII+GLL+    S+ FG+S  Y +A+++R
Sbjct:  147 GFYAGYVASSFTFGRFLSGYFWGFVTDRFGRKPVIIMGLLSMITFSVLFGISRSYTMAITTR 208          
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Match: UPI00053AB22C (probable peptide/nitrate transporter At3g43790 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053AB22C)

HSP 1 Score: 70.9 bits (172), Expect = 3.600e-14
Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    4 GFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTFGLSTKYWVALSSRY 192
            GFYAG V S+F +GR L+  FWG ++D  GRK +I+IG  +  I +  FGLST +W+A+SSR+
Sbjct:   37 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAISSRF 99          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14889.2842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN44_9PHAE7.640e-3295.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJK9_ECTSI3.910e-2069.84MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K5T8_9PHAE1.980e-1971.43MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJX6_ECTSI2.960e-1966.67MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LET2_ECTSI1.060e-1865.08MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JAX4_9PHAE3.250e-1865.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0L9_ECTSI5.530e-1559.68MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2H9ZZH4_9ASPA7.980e-1555.56Putative peptide/nitrate transporter n=1 Tax=Apost... [more]
A0A6H5JRQ3_9PHAE7.990e-1559.68MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI00053AB22C3.600e-1450.79probable peptide/nitrate transporter At3g43790 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14889contigE-siliculosus-1a_F_contig14889:839..1030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size192
Model size192
Exons1
Hectar predicted targeting categorysignal anchor
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.I
EggNOG OGsKOG2615@1,KOG2615@2759
EggNOG free text desc.major facilitator superfamily
Seed eggNOG ortholog2880.D8LJK9
Seed ortholog evalue6.8e-16
Seed ortholog score89.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928000.3473008-CDS-E-siliculosus-1a_F_contig14889:838..10301622928000.3473008-CDS-E-siliculosus-1a_F_contig14889:838..1030Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14889 839..1030 +
1696318767.3005502-CDS-E-siliculosus-1a_F_contig14889:838..10301696318767.3005502-CDS-E-siliculosus-1a_F_contig14889:838..1030Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14889 839..1030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14889.2842.1prot_E-siliculosus-1a_F_contig14889.2842.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14889 839..1030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14889.2842.1

>prot_E-siliculosus-1a_F_contig14889.2842.1 ID=prot_E-siliculosus-1a_F_contig14889.2842.1|Name=mRNA_E-siliculosus-1a_F_contig14889.2842.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=64bp
AGFYAGAVSSAFTLGRFLSGYFWGHVSDSCGRKLVIIIGLLTTTIVSLTF
GLSTKYWVALSSRY
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mRNA from alignment at E-siliculosus-1a_F_contig14889:839..1030+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14889.2842.1 ID=mRNA_E-siliculosus-1a_F_contig14889.2842.1|Name=mRNA_E-siliculosus-1a_F_contig14889.2842.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=192bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14889:839..1030+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGGTTTCTATGCCGGTGCCGTCTCAAGTGCATTCACTTTGGGCCGATT CTTGAGCGGTTATTTTTGGGGACATGTCTCCGACTCCTGCGGCAGGAAGC TGGTGATCATCATCGGGTTGTTGACGACCACCATCGTGTCACTGACCTTC GGTCTGTCGACAAAGTACTGGGTCGCCCTTTCGTCAAGGTAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14889:839..1030+

>mRNA_E-siliculosus-1a_F_contig14889.2842.1 ID=mRNA_E-siliculosus-1a_F_contig14889.2842.1|Name=mRNA_E-siliculosus-1a_F_contig14889.2842.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14889:839..1030+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGGTTTCTATGCCGGTGCCGTCTCAAGTGCATTCACTTTGGGCCGATT
CTTGAGCGGTTATTTTTGGGGACATGTCTCCGACTCCTGCGGCAGGAAGC
TGGTGATCATCATCGGGTTGTTGACGACCACCATCGTGTCACTGACCTTC
GGTCTGTCGACAAAGTACTGGGTCGCCCTTTCGTCAAGGTATGCAGGTTT
CTATGCCGGTGCCGTCTCAAGTGCATTCACTTTGGGCCGATTCTTGAGCG
GTTATTTTTGGGGACATGTCTCCGACTCCTGCGGCAGGAAGCTGGTGATC
ATCATCGGGTTGTTGACGACCACCATCGTGTCACTGACCTTCGGTCTGTC
GACAAAGTACTGGGTCGCCCTTTCGTCAAGGTAT
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