mRNA_E-siliculosus-1a_F_contig1484.2825.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1484.2825.1
Unique NamemRNA_E-siliculosus-1a_F_contig1484.2825.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1484.2825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1484contigE-siliculosus-1a_F_contig1484:28710..29647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size201
Model size201
Exons2
Ec32 orthologEc-23_003300.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927995.9698212-CDS-E-siliculosus-1a_F_contig1484:28709..288261622927995.9698212-CDS-E-siliculosus-1a_F_contig1484:28709..28826Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1484 28710..28826 +
1696318766.2068746-CDS-E-siliculosus-1a_F_contig1484:28709..288261696318766.2068746-CDS-E-siliculosus-1a_F_contig1484:28709..28826Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1484 28710..28826 +
1622927995.98704-CDS-E-siliculosus-1a_F_contig1484:29563..296471622927995.98704-CDS-E-siliculosus-1a_F_contig1484:29563..29647Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1484 29564..29647 +
1696318766.2164295-CDS-E-siliculosus-1a_F_contig1484:29563..296471696318766.2164295-CDS-E-siliculosus-1a_F_contig1484:29563..29647Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1484 29564..29647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1484.2825.1prot_E-siliculosus-1a_F_contig1484.2825.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1484 28710..29647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1484.2825.1

>prot_E-siliculosus-1a_F_contig1484.2825.1 ID=prot_E-siliculosus-1a_F_contig1484.2825.1|Name=mRNA_E-siliculosus-1a_F_contig1484.2825.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=67bp
MVVMPSTALLLPMALLPMTLMVVWVVPGTAQPTPEGNMTCPLPTGHHGAR
RLTDYADHVSTGEGDF*
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mRNA from alignment at E-siliculosus-1a_F_contig1484:28710..29647+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1484.2825.1 ID=mRNA_E-siliculosus-1a_F_contig1484.2825.1|Name=mRNA_E-siliculosus-1a_F_contig1484.2825.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=938bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1484:28710..29647+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCGTGATGCCATCGACGGCACTACTACTACCGATGGCGCTACTACC
GATGACACTGATGGTCGTGTGGGTGGTGCCAGGGACCGCCCAGCCCACCC
CCGAAGGAAACATGACGGTGAGACGGGCGCTATCGCTGCTGCTTCGGCCT
CTGGTGTTGTATGTAAGTTGGTGAGGTTTATCGATGCTGATTGGTTTTGT
GGTGGTGGTCGTGGCCGTCATCGTCAGTATTCTTGCTTTGCCGTTGGTGT
GAGATCAGGGTGTGCTCTTCTTGTTCGTTCGCGAAATGCACCATGAAGAA
GTGAAGATATCCAGAACAATTTAGTCAACCAATATCGTCTCGCTTAGGGA
TCTTTGGTTCAATCTCTTCATCCCCCACTATCTCCATGAGGCCCCATGGG
GCCTCAAGGAGAACGAAGCGAAGTTGGGAACCTCATGGGCGCTCATGGTG
CCCCACGGGCATTTTTCAGGAAATCGTCTTTTTTTCCCGTATTTTGTTTC
CTTTTGCACCCAGGAAGCTCCATGGCGGTCCACGGTGCACCATGAGATTC
CACTCTTTTACGAATTCCTTCAATTCTGGGACATGCCGCCTCATGGTGCC
CGATGTGGAGCCATGCCAAAAGGCCCATGAGATTTCCCATGGGGTTCCAT
GGGATGGCATGGAAATGCTGTCATGAGGTCCCCCATGAGAGAGATAATTA
TCATGGGCCACCATGAGACCTCATGGTGGGACATGGTGGGGCATGGTGCC
CGCCCCATGAAACGTTGCATGTTCCCTTTTTGCTCATTACCCAGTAAGCT
GTTAAGTCTTTGCCACCCTCCTCCTCTCCTCCTGCACCTACCGTGTTCAC
AAAGTGTCCTCTTCCCACAGGCCATCACGGAGCGCGAAGATTGACCGACT
ACGCCGATCACGTGAGCACCGGTGAGGGTGATTTCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1484:28710..29647+

>mRNA_E-siliculosus-1a_F_contig1484.2825.1 ID=mRNA_E-siliculosus-1a_F_contig1484.2825.1|Name=mRNA_E-siliculosus-1a_F_contig1484.2825.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1484:28710..29647+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCGTGATGCCATCGACGGCACTACTACTACCGATGGCGCTACTACC
GATGACACTGATGGTCGTGTGGGTGGTGCCAGGGACCGCCCAGCCCACCC
CCGAAGGAAACATGACGATGGTCGTGATGCCATCGACGGCACTACTACTA
CCGATGGCGCTACTACCGATGACACTGATGGTCGTGTGGGTGGTGCCAGG
GACCGCCCAGCCCACCCCCGAAGGAAACATGACGTGTCCTCTTCCCACAG
GCCATCACGGAGCGCGAAGATTGACCGACTACGCCGATCACGTGAGCACC
GGTGAGGGTGATTTCTGATGTCCTCTTCCCACAGGCCATCACGGAGCGCG
AAGATTGACCGACTACGCCGATCACGTGAGCACCGGTGAGGGTGATTTCT
GA
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