mRNA_E-siliculosus-1a_F_contig14755.2775.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14755.2775.1
Unique NamemRNA_E-siliculosus-1a_F_contig14755.2775.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14755.2775.1 vs. uniprot
Match: A0A5S3PHJ4_9FLAO (DUF2147 domain-containing protein n=1 Tax=Maribacter algarum TaxID=2578118 RepID=A0A5S3PHJ4_9FLAO)

HSP 1 Score: 224 bits (572), Expect = 1.230e-73
Identity = 105/134 (78.36%), Postives = 124/134 (92.54%), Query Frame = 1
Query:    1 ILFIATLSITTNGQGILGQWETYDDETNEKKALIEIYNTNNSYYAKIVKSYVGDSSGICEQCEGAKKNQPINGLVIIENLQKDDDEYNGGTILDPQNGKTYKCYLELVETNKLKVRGYLGFSLLGRTQYWRRKE 402
            +L +  +S  + GQGI+GQWETYDDETN+KKALIEIY TN+S+YAKIV+SYV  +SGICE+CEGAKK+QPI GLVIIE+L++DDDE+NGGTILDP+NGKTYKCYL+L+ETNKLKVRGYLGFSLLGRTQYWRRKE
Sbjct:    6 LLVLFFMSGLSYGQGIIGQWETYDDETNQKKALIEIYQTNDSFYAKIVESYVKGTSGICEKCEGAKKDQPIAGLVIIEDLKEDDDEFNGGTILDPENGKTYKCYLQLLETNKLKVRGYLGFSLLGRTQYWRRKE 139          
BLAST of mRNA_E-siliculosus-1a_F_contig14755.2775.1 vs. uniprot
Match: UPI001666E484 (DUF2147 domain-containing protein n=1 Tax=Polaribacter pacificus TaxID=1775173 RepID=UPI001666E484)

HSP 1 Score: 209 bits (531), Expect = 2.180e-67
Identity = 97/134 (72.39%), Postives = 110/134 (82.09%), Query Frame = 1
Query:    1 ILFIATLSITTNGQGILGQWETYDDETNEKKALIEIYNTNNSYYAKIVKSYVGDSSGICEQCEGAKKNQPINGLVIIENLQKDDDEYNGGTILDPQNGKTYKCYLELVETNKLKVRGYLGFSLLGRTQYWRRKE 402
            ILF   + IT NGQ I+GQWET+DD+T +KKA+IEIY T N YYAKIVKS+VG+   ICE C G KK+ PI GLVIIENL+KD DE+NGGTILDP+NGKTYKCYLEL+  NKLKVRGYLG SL GRTQYW RKE
Sbjct:    6 ILFTMAICITVNGQTIIGQWETFDDKTKDKKAIIEIYKTKNVYYAKIVKSFVGEKDAICETCTGTKKDTPIIGLVIIENLKKDGDEFNGGTILDPENGKTYKCYLELINKNKLKVRGYLGISLFGRTQYWSRKE 139          
BLAST of mRNA_E-siliculosus-1a_F_contig14755.2775.1 vs. uniprot
Match: A0A6I2MNL6_9FLAO (DUF2147 domain-containing protein n=1 Tax=Maribacter luteus TaxID=2594478 RepID=A0A6I2MNL6_9FLAO)

HSP 1 Score: 203 bits (517), Expect = 2.960e-65
Identity = 94/133 (70.68%), Postives = 110/133 (82.71%), Query Frame = 1
Query:    4 LFIATLSITTNGQGILGQWETYDDETNEKKALIEIYNTNNSYYAKIVKSYVGDSSGICEQCEGAKKNQPINGLVIIENLQKDDDEYNGGTILDPQNGKTYKCYLELVETNKLKVRGYLGFSLLGRTQYWRRKE 402
            L I TLS  + GQ I GQWETYDDET EKKA+IEIY T+N Y+AKIVKS+  D + +C+ C+G KK +PI+GLVIIEN++KDDDE+NGGTILDP+NGK YKCYLELV  NKLKVRG+LG SL GRTQYW RKE
Sbjct:    7 LCIMTLSFVSYGQSITGQWETYDDETKEKKAIIEIYKTDNLYFAKIVKSFKSDKNAVCDNCKGTKKGKPISGLVIIENIKKDDDEFNGGTILDPENGKIYKCYLELVNKNKLKVRGFLGVSLFGRTQYWIRKE 139          
BLAST of mRNA_E-siliculosus-1a_F_contig14755.2775.1 vs. uniprot
Match: A0A516GT51_9FLAO (DUF2147 domain-containing protein n=1 Tax=Formosa sediminum TaxID=2594004 RepID=A0A516GT51_9FLAO)

HSP 1 Score: 200 bits (508), Expect = 6.950e-64
Identity = 92/133 (69.17%), Postives = 111/133 (83.46%), Query Frame = 1
Query:    4 LFIATLSITTNGQGILGQWETYDDETNEKKALIEIYNTNNSYYAKIVKSYVGDSSGICEQCEGAKKNQPINGLVIIENLQKDDDEYNGGTILDPQNGKTYKCYLELVETNKLKVRGYLGFSLLGRTQYWRRKE 402
            L + T+SITTN Q I+GQWETYDD+TNEKKALIEI  TN++Y AKI+  YVGD   +CE+CEG KKN+PI GLVIIE+++KDDDEYN GTILDP++G  Y CYL+LV T+KLKVRG+LG SL GRTQYW RK+
Sbjct:    7 LLLITISITTNAQSIIGQWETYDDKTNEKKALIEISKTNDTYSAKIIDKYVGDMDSVCEKCEGDKKNKPIIGLVIIEDIKKDDDEYNDGTILDPESGDVYSCYLKLVNTDKLKVRGFLGVSLFGRTQYWLRKK 139          
BLAST of mRNA_E-siliculosus-1a_F_contig14755.2775.1 vs. uniprot
Match: UPI001ADFE6A5 (DUF2147 domain-containing protein n=1 Tax=Pseudozobellia sp. WGM2 TaxID=2787625 RepID=UPI001ADFE6A5)

HSP 1 Score: 199 bits (507), Expect = 1.020e-63
Identity = 94/134 (70.15%), Postives = 109/134 (81.34%), Query Frame = 1
Query:    4 LFIAT-LSITTNGQGILGQWETYDDETNEKKALIEIYNTNNSYYAKIVKSYVGDSSGICEQCEGAKKNQPINGLVIIENLQKDDDEYNGGTILDPQNGKTYKCYLELVETNKLKVRGYLGFSLLGRTQYWRRKE 402
            LF AT LS  + GQ ILGQW+T+DD+TN+KKA++EIY  NN Y+AKIV SYV + + ICE C G KK QPI GLVIIENL+KDD EYNGGTILDP+NGKTY CYLELV  NKLK+RGYLG SL GRTQYW +K+
Sbjct:    7 LFCATTLSFVSYGQSILGQWQTFDDKTNKKKAVVEIYKINNLYFAKIVDSYVSEKNAICESCNGEKKGQPIIGLVIIENLKKDDSEYNGGTILDPENGKTYNCYLELVGNNKLKIRGYLGVSLFGRTQYWTKKQ 140          
BLAST of mRNA_E-siliculosus-1a_F_contig14755.2775.1 vs. uniprot
Match: UPI0008262811 (DUF2147 domain-containing protein n=1 Tax=Formosa haliotis TaxID=1555194 RepID=UPI0008262811)

HSP 1 Score: 197 bits (501), Expect = 8.100e-63
Identity = 89/134 (66.42%), Postives = 111/134 (82.84%), Query Frame = 1
Query:    1 ILFIATLSITTNGQGILGQWETYDDETNEKKALIEIYNTNNSYYAKIVKSYVGDSSGICEQCEGAKKNQPINGLVIIENLQKDDDEYNGGTILDPQNGKTYKCYLELVETNKLKVRGYLGFSLLGRTQYWRRKE 402
            +L +  LS++ N Q ILG WETYDD+TNEKKALIEIY T ++Y+AKIV  Y+GD + +CE+CEG KKN+PI GLVIIENL+KD  EYNGG+ILDP++G  Y CY++LV+ NKLKVRG+LG +LLGRTQYW RKE
Sbjct:    6 LLVVLMLSLSVNAQSILGTWETYDDKTNEKKALIEIYQTGDAYFAKIVDKYIGDKNSVCEKCEGDKKNKPIIGLVIIENLKKDGKEYNGGSILDPESGDEYSCYVKLVDNNKLKVRGFLGMALLGRTQYWLRKE 139          
BLAST of mRNA_E-siliculosus-1a_F_contig14755.2775.1 vs. uniprot
Match: UPI001660C96E (DUF2147 domain-containing protein n=1 Tax=Maribacter sp. ANRC-HE7 TaxID=2737171 RepID=UPI001660C96E)

HSP 1 Score: 197 bits (501), Expect = 8.100e-63
Identity = 91/134 (67.91%), Postives = 106/134 (79.10%), Query Frame = 1
Query:    1 ILFIATLSITTNGQGILGQWETYDDETNEKKALIEIYNTNNSYYAKIVKSYVGDSSGICEQCEGAKKNQPINGLVIIENLQKDDDEYNGGTILDPQNGKTYKCYLELVETNKLKVRGYLGFSLLGRTQYWRRKE 402
            +L + T    T+GQ I+GQWETYDDET  KKALIEIY  NN ++AKIVKSY  +   +CE C+G KK +PINGLVIIEN++KD DE+N GTILDP+NGK YKCYLELV+  KLKVRGYLG SL GRTQYW RKE
Sbjct:    6 LLLMLTFCSITHGQSIIGQWETYDDETQAKKALIEIYEKNNLFFAKIVKSYSSEKDAVCENCKGTKKGKPINGLVIIENIKKDGDEFNSGTILDPENGKIYKCYLELVDNYKLKVRGYLGLSLFGRTQYWIRKE 139          
BLAST of mRNA_E-siliculosus-1a_F_contig14755.2775.1 vs. uniprot
Match: A0A1M6NF24_9FLAO (Uncharacterized conserved protein, DUF2147 family n=4 Tax=Maribacter TaxID=252356 RepID=A0A1M6NF24_9FLAO)

HSP 1 Score: 197 bits (500), Expect = 1.150e-62
Identity = 92/133 (69.17%), Postives = 109/133 (81.95%), Query Frame = 1
Query:    4 LFIATLSITTNGQGILGQWETYDDETNEKKALIEIYNTNNSYYAKIVKSYVGDSSGICEQCEGAKKNQPINGLVIIENLQKDDDEYNGGTILDPQNGKTYKCYLELVETNKLKVRGYLGFSLLGRTQYWRRKE 402
            L +  +S  + GQ I GQWET+D+ETNEKKALIEIY TN++Y+AKIV SY  D+  +CE C+G+KK Q I GLVIIE+++KD DEYN GTILDP+NGK YKCYLEL E NKLKVRGYLGFSLLGRTQYW RK+
Sbjct:    7 LLLMIVSFISYGQTITGQWETFDEETNEKKALIEIYKTNDTYFAKIVNSYKSDADKVCENCKGSKKGQKIRGLVIIEDIKKDGDEYNDGTILDPENGKEYKCYLELEEPNKLKVRGYLGFSLLGRTQYWIRKQ 139          
BLAST of mRNA_E-siliculosus-1a_F_contig14755.2775.1 vs. uniprot
Match: UPI0019CC2C9F (Uncharacterized protein n=2 Tax=Croceivirga lutea TaxID=1775167 RepID=UPI0019CC2C9F)

HSP 1 Score: 196 bits (499), Expect = 1.800e-62
Identity = 92/133 (69.17%), Postives = 107/133 (80.45%), Query Frame = 1
Query:    4 LFIATLSITTNGQGILGQWETYDDETNEKKALIEIYNTNNSYYAKIVKSYVGDSSGICEQCEGAKKNQPINGLVIIENLQKDDDEYNGGTILDPQNGKTYKCYLELVETNKLKVRGYLGFSLLGRTQYWRRKE 402
            LF+A +   T  Q I GQWET DD TNEKKALIEIY TN+ YYAKIVKSY+ D   +C +C+G KKN PI GLVIIE L++D DEYNGGTILDP+NGKTYKCY+EL   +KLKVRGYLGF+L+GRTQYW RK+
Sbjct:   10 LFLALVCSVTFAQTIEGQWETIDDTTNEKKALIEIYETNDKYYAKIVKSYISDKDAVCLECKGDKKNAPIPGLVIIEGLEEDGDEYNGGTILDPENGKTYKCYVELASDDKLKVRGYLGFALIGRTQYWVRKK 142          
BLAST of mRNA_E-siliculosus-1a_F_contig14755.2775.1 vs. uniprot
Match: UPI0004175BF1 (DUF2147 domain-containing protein n=1 Tax=Tenacibaculum ovolyticum TaxID=104270 RepID=UPI0004175BF1)

HSP 1 Score: 196 bits (497), Expect = 3.290e-62
Identity = 89/133 (66.92%), Postives = 112/133 (84.21%), Query Frame = 1
Query:    1 ILFIATLSITTNGQGILGQWETYDDETNEKKALIEIYNTNNSYYAKIVKSYVGDSSGICEQCEGAKKNQPINGLVIIENLQKDDDEYNGGTILDPQNGKTYKCYLELVETNKLKVRGYLGFSLLGRTQYWRRK 399
            IL I TLS+TTN Q I+GQWET+DD+T EKKA+IEIY TN+ Y+AKI+KS++G+ + +C+ C G KKNQ I GLVIIE L+K+ +E+NGG ILDP+NGK+YKCYL+L+  NKLKVRG+LGFSL GRTQYW RK
Sbjct:    6 ILIIITLSLTTNAQTIIGQWETFDDKTKEKKAVIEIYKTNSLYFAKIIKSFIGEENALCKACNGNKKNQSIIGLVIIEKLKKEGNEFNGGFILDPENGKSYKCYLKLITKNKLKVRGFLGFSLFGRTQYWIRK 138          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14755.2775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S3PHJ4_9FLAO1.230e-7378.36DUF2147 domain-containing protein n=1 Tax=Maribact... [more]
UPI001666E4842.180e-6772.39DUF2147 domain-containing protein n=1 Tax=Polariba... [more]
A0A6I2MNL6_9FLAO2.960e-6570.68DUF2147 domain-containing protein n=1 Tax=Maribact... [more]
A0A516GT51_9FLAO6.950e-6469.17DUF2147 domain-containing protein n=1 Tax=Formosa ... [more]
UPI001ADFE6A51.020e-6370.15DUF2147 domain-containing protein n=1 Tax=Pseudozo... [more]
UPI00082628118.100e-6366.42DUF2147 domain-containing protein n=1 Tax=Formosa ... [more]
UPI001660C96E8.100e-6367.91DUF2147 domain-containing protein n=1 Tax=Maribact... [more]
A0A1M6NF24_9FLAO1.150e-6269.17Uncharacterized conserved protein, DUF2147 family ... [more]
UPI0019CC2C9F1.800e-6269.17Uncharacterized protein n=2 Tax=Croceivirga lutea ... [more]
UPI0004175BF13.290e-6266.92DUF2147 domain-containing protein n=1 Tax=Tenaciba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14755contigE-siliculosus-1a_F_contig14755:3..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size405
Model size405
Exons1
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelFlavobacteriia
COG Functional cat.S
EggNOG OGs1I2T1@117743,4NQCK@976,COG4731@1,COG4731@2
EggNOG free text desc.protein conserved in bacteria
Seed eggNOG ortholog1392498.JQLH01000001_gene1325
Seed ortholog evalue6.8e-50
Seed ortholog score203.4
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927985.0695977-CDS-E-siliculosus-1a_F_contig14755:2..4071622927985.0695977-CDS-E-siliculosus-1a_F_contig14755:2..407Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14755 3..407 +
1696318763.2897484-CDS-E-siliculosus-1a_F_contig14755:2..4071696318763.2897484-CDS-E-siliculosus-1a_F_contig14755:2..407Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14755 3..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14755.2775.1prot_E-siliculosus-1a_F_contig14755.2775.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14755 3..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14755.2775.1

>prot_E-siliculosus-1a_F_contig14755.2775.1 ID=prot_E-siliculosus-1a_F_contig14755.2775.1|Name=mRNA_E-siliculosus-1a_F_contig14755.2775.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=135bp
ILFIATLSITTNGQGILGQWETYDDETNEKKALIEIYNTNNSYYAKIVKS
YVGDSSGICEQCEGAKKNQPINGLVIIENLQKDDDEYNGGTILDPQNGKT
YKCYLELVETNKLKVRGYLGFSLLGRTQYWRRKE*
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mRNA from alignment at E-siliculosus-1a_F_contig14755:3..407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14755.2775.1 ID=mRNA_E-siliculosus-1a_F_contig14755.2775.1|Name=mRNA_E-siliculosus-1a_F_contig14755.2775.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=405bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14755:3..407+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATCTTATTCATAGCGACTTTAAGCATAACGACCAATGGCCAGGGAATTCT GGGTCAATGGGAGACCTATGATGACGAAACAAATGAGAAAAAAGCGTTGA TCGAAATTTATAATACAAATAATAGCTACTACGCTAAAATTGTTAAGAGT TATGTAGGAGATTCAAGTGGTATTTGCGAACAATGTGAAGGAGCAAAAAA AAACCAGCCCATCAATGGTTTGGTTATTATTGAGAATTTGCAAAAAGATG ACGATGAGTATAACGGAGGGACGATTCTAGATCCTCAAAATGGTAAAACG TATAAGTGCTATTTGGAGCTGGTGGAAACCAATAAACTAAAAGTAAGAGG ATATCTTGGTTTTTCACTTCTCGGCAGAACTCAATATTGGCGTAGAAAAG AATAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14755:3..407+

>mRNA_E-siliculosus-1a_F_contig14755.2775.1 ID=mRNA_E-siliculosus-1a_F_contig14755.2775.1|Name=mRNA_E-siliculosus-1a_F_contig14755.2775.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=810bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14755:3..407+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATCTTATTCATAGCGACTTTAAGCATAACGACCAATGGCCAGGGAATTCT
GGGTCAATGGGAGACCTATGATGACGAAACAAATGAGAAAAAAGCGTTGA
TCGAAATTTATAATACAAATAATAGCTACTACGCTAAAATTGTTAAGAGT
TATGTAGGAGATTCAAGTGGTATTTGCGAACAATGTGAAGGAGCAAAAAA
AAACCAGCCCATCAATGGTTTGGTTATTATTGAGAATTTGCAAAAAGATG
ACGATGAGTATAACGGAGGGACGATTCTAGATCCTCAAAATGGTAAAACG
TATAAGTGCTATTTGGAGCTGGTGGAAACCAATAAACTAAAAGTAAGAGG
ATATCTTGGTTTTTCACTTCTCGGCAGAACTCAATATTGGCGTAGAAAAG
AATAAATCTTATTCATAGCGACTTTAAGCATAACGACCAATGGCCAGGGA
ATTCTGGGTCAATGGGAGACCTATGATGACGAAACAAATGAGAAAAAAGC
GTTGATCGAAATTTATAATACAAATAATAGCTACTACGCTAAAATTGTTA
AGAGTTATGTAGGAGATTCAAGTGGTATTTGCGAACAATGTGAAGGAGCA
AAAAAAAACCAGCCCATCAATGGTTTGGTTATTATTGAGAATTTGCAAAA
AGATGACGATGAGTATAACGGAGGGACGATTCTAGATCCTCAAAATGGTA
AAACGTATAAGTGCTATTTGGAGCTGGTGGAAACCAATAAACTAAAAGTA
AGAGGATATCTTGGTTTTTCACTTCTCGGCAGAACTCAATATTGGCGTAG
AAAAGAATAA
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