prot_E-siliculosus-1a_F_contig1470.2757.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1470.2757.1
Unique Nameprot_E-siliculosus-1a_F_contig1470.2757.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length164
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1470.2757.1 vs. uniprot
Match: A0A6H5L5U0_9PHAE (SAP30_Sin3_bdg domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U0_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 1.100e-81
Identity = 127/133 (95.49%), Postives = 130/133 (97.74%), Query Frame = 0 
Query:    1 MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLALSRMGSLSVDTADLGGGGXXXXXXRSAMPNAMMH 133
            MNGLR+TV PGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEE VMVSFLQKVIVPDRPFEPTIDLAL+RMGSLSVDTADLGGG XXXXXXRS+MPNAMMH
Sbjct:    1 MNGLRDTVSPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEENVMVSFLQKVIVPDRPFEPTIDLALARMGSLSVDTADLGGGXXXXXXXRSSMPNAMMH 133
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BLAST of mRNA_E-siliculosus-1a_F_contig1470.2757.1 vs. uniprot
Match: D7FGV9_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV9_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 8.090e-79
Identity = 129/132 (97.73%), Postives = 131/132 (99.24%), Query Frame = 0 
Query:    1 MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLALSRMGSLSVDTADLGGGGXXXXXXRSAMPNAMM 132
            MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLALSRMGSLSVDTADLGGGG XXXXXR+AMPNA+M
Sbjct:    1 MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLALSRMGSLSVDTADLGGGGGXXXXXRNAMPNAVM 132
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BLAST of mRNA_E-siliculosus-1a_F_contig1470.2757.1 vs. uniprot
Match: A0A7S4DFH4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFH4_HETAK)

HSP 1 Score: 84.3 bits (207), Expect = 1.350e-17
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 0 
Query:   12 PYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRP-----FEPT 95
            PYFPFHRDE YP+   V+F++L+  TL+ Y   H INVRPD ++ ELA+AAA HF+   +V+E   + SFL K  + D P      EPT
Sbjct:   21 PYFPFHRDEVYPKGTKVDFRKLKASTLELYALKHKINVRPDATREELAIAAALHFKSRETVNEHTAISSFLNKCGINDIPTGLPLLEPT 109
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1470.2757.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L5U0_9PHAE1.100e-8195.49SAP30_Sin3_bdg domain-containing protein (Fragment... [more]
D7FGV9_ECTSI8.090e-7997.73SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A7S4DFH4_HETAK1.350e-1748.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038291SAP30, C-terminal domain superfamilyGENE3D1.10.720.110coord: 17..91
e-value: 1.1E-9
score: 40.0
IPR025718Histone deacetylase complex subunit SAP30, Sin3 binding domainPFAMPF13867SAP30_Sin3_bdgcoord: 33..85
e-value: 8.7E-16
score: 58.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1470contigE-siliculosus-1a_F_contig1470:949..3701 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1470.2757.1mRNA_E-siliculosus-1a_F_contig1470.2757.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1470 949..3992 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1470.2757.1 ID=prot_E-siliculosus-1a_F_contig1470.2757.1|Name=mRNA_E-siliculosus-1a_F_contig1470.2757.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=164bp
MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVR
PDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLAL
SRMGSLSVDTADLGGGGGSGGGGRSAMPNAMMHDHMDDGMNDDMVDSMGG
DMGGGGGGRGGTHG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025718SAP30_Sin3-bd
IPR038291SAP30_C_sf