mRNA_E-siliculosus-1a_F_contig1470.2757.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1470.2757.1
Unique NamemRNA_E-siliculosus-1a_F_contig1470.2757.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1470.2757.1 vs. uniprot
Match: A0A6H5L5U0_9PHAE (SAP30_Sin3_bdg domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U0_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 4.400e-80
Identity = 127/133 (95.49%), Postives = 130/133 (97.74%), Query Frame = 1 
Query:  292 MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLALSRMGSLSVDTADLGGGGXXXXXXRSAMPNAMMH 690
            MNGLR+TV PGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEE VMVSFLQKVIVPDRPFEPTIDLAL+RMGSLSVDTADLGGG XXXXXXRS+MPNAMMH
Sbjct:    1 MNGLRDTVSPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEENVMVSFLQKVIVPDRPFEPTIDLALARMGSLSVDTADLGGGXXXXXXXRSSMPNAMMH 133
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1470.2757.1 vs. uniprot
Match: D7FGV9_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV9_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 3.280e-77
Identity = 129/132 (97.73%), Postives = 131/132 (99.24%), Query Frame = 1 
Query:  292 MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLALSRMGSLSVDTADLGGGGXXXXXXRSAMPNAMM 687
            MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLALSRMGSLSVDTADLGGGG XXXXXR+AMPNA+M
Sbjct:    1 MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLALSRMGSLSVDTADLGGGGGXXXXXRNAMPNAVM 132
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1470.2757.1 vs. uniprot
Match: A0A7S4DFH4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFH4_HETAK)

HSP 1 Score: 84.3 bits (207), Expect = 1.460e-16
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:  325 PYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRP-----FEPT 576
            PYFPFHRDE YP+   V+F++L+  TL+ Y   H INVRPD ++ ELA+AAA HF+   +V+E   + SFL K  + D P      EPT
Sbjct:   21 PYFPFHRDEVYPKGTKVDFRKLKASTLELYALKHKINVRPDATREELAIAAALHFKSRETVNEHTAISSFLNKCGINDIPTGLPLLEPT 109
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1470.2757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L5U0_9PHAE4.400e-8095.49SAP30_Sin3_bdg domain-containing protein (Fragment... [more]
D7FGV9_ECTSI3.280e-7797.73SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A7S4DFH4_HETAK1.460e-1648.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1470contigE-siliculosus-1a_F_contig1470:949..3992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size492
Model size783
Exons3
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03012,ko03021,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.ADK
Ec32 orthologEc-11_000840.1
Ec32 ortholog descriptionSGF29 tudor-like domain protein
EggNOG OGsKOG3038@1,KOG3038@2759
EggNOG free text desc.methylated histone binding
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0009628,GO:0009651,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051276,GO:0071704,GO:0071840,GO:1901564
KEGG Pathwayko03013,map03013
KEGG koko:K03246,ko:K11364
Seed eggNOG ortholog2880.D7FGV9
Seed ortholog evalue8.3e-66
Seed ortholog score256.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1470.2757.1prot_E-siliculosus-1a_F_contig1470.2757.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1470 949..3701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927981.8129973-CDS-E-siliculosus-1a_F_contig1470:948..12391622927981.8129973-CDS-E-siliculosus-1a_F_contig1470:948..1239Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1470 949..1239 -
1696318761.948755-CDS-E-siliculosus-1a_F_contig1470:948..12391696318761.948755-CDS-E-siliculosus-1a_F_contig1470:948..1239Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1470 949..1239 -
1622927981.8240345-CDS-E-siliculosus-1a_F_contig1470:1677..17761622927981.8240345-CDS-E-siliculosus-1a_F_contig1470:1677..1776Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1470 1678..1776 -
1696318761.9581711-CDS-E-siliculosus-1a_F_contig1470:1677..17761696318761.9581711-CDS-E-siliculosus-1a_F_contig1470:1677..1776Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1470 1678..1776 -
1622927981.8434892-CDS-E-siliculosus-1a_F_contig1470:3599..37011622927981.8434892-CDS-E-siliculosus-1a_F_contig1470:3599..3701Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1470 3600..3701 -
1696318761.9661298-CDS-E-siliculosus-1a_F_contig1470:3599..37011696318761.9661298-CDS-E-siliculosus-1a_F_contig1470:3599..3701Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1470 3600..3701 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927981.8641424-UTR-E-siliculosus-1a_F_contig1470:3701..39921622927981.8641424-UTR-E-siliculosus-1a_F_contig1470:3701..3992Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1470 3702..3992 -
1696318761.9755251-UTR-E-siliculosus-1a_F_contig1470:3701..39921696318761.9755251-UTR-E-siliculosus-1a_F_contig1470:3701..3992Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1470 3702..3992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1470.2757.1

>prot_E-siliculosus-1a_F_contig1470.2757.1 ID=prot_E-siliculosus-1a_F_contig1470.2757.1|Name=mRNA_E-siliculosus-1a_F_contig1470.2757.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=164bp
MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVR
PDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLAL
SRMGSLSVDTADLGGGGGSGGGGRSAMPNAMMHDHMDDGMNDDMVDSMGG
DMGGGGGGRGGTHG
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1470:949..3992-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1470.2757.1 ID=mRNA_E-siliculosus-1a_F_contig1470.2757.1|Name=mRNA_E-siliculosus-1a_F_contig1470.2757.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3044bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1470:949..3992- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCCGCTGCTGCTGCTGCTGTGTGTGCGAGCTTTGCAGGGAATTACACAA
CGCAGGCGACAGGGTGGCAGGGGTTGCGGCTAGATCAGTGAGATAGACAC
GCAGAGATAGAGGAAGGCACACACGGAAAGACAGGCAGAGAGACAAGGAG
AGGGCTAAGCGAGAGTTACGTCCGTCGTCGGATAGTGGTCTCGCAGACAC
CTCCCCCGACTGCTGGTTTGCTACTCGTGTCGAAGCTGCTGCTGTGTCCA
GGTCGTCTCACTAGAAAGCTCCCCCGCTGGATGCCCTCGCCATGAACGGG
TTGCGCGAGACGGTCCCCCCAGGGCCGTACTTCCCCTTCCACCGAGACGA
GACCTACCCCAGGACTCTCTGCGTGAACTTCAAGAGGCTAGAGGTGAGCA
GCGAGTCCGTATCAACAGGGCGCGGAATTAGCGGTGGGTCTATGCAGCTC
CCTGGCATCATCATCTATCTCTACATCCCCAAACGGCAACATACGTACAG
TAGAAGCAGCACCCAGCGCTTGTCCCGTGTCTCGCTGGATGGCGCGGAGT
AGGATGATCCCGTGCCTTTTGCTCCGCCGCTGGTAATCAGCTAGGCTCGC
CGGCAGTCTGTTGTCATCCCGCGTGTCTGTGGTGTGGATGAAGACTGCGT
GTGTATTGTTTTTGGAGAGCGTTCGTTGGTCTCCACATCCATCCTCCACG
CCGCCGTTAGAGACTTAGCTCAGAAGCTTTAGCGCTACAACTGTTGGTGT
AACTCACGGCTGCTGCGGCTCTTCGTCTCTGACGCCGTCGCAGTAGTACA
AGCGTGGTCGCAAGGGCGCTGTAGTAGTCTTACAACGTGTGTGCTGCAAA
CTTCGTGCGGGGTTGTTGTTGAACGGCAGCCTCCGGCCTGTATTCACACA
GCCCGCACATCTTGCTTCCCTGAAGTCCACACGACGTTCCAACGGCGGCC
TGGTGCGTGTCGCAGTGGAGCTGTTAAGCGTCCCCTGCCATGGTTCACGC
CAAGGCCGTGGATCCACTCGCTGTAGCAGCAGTTTTCTGTGGAGCGTCGT
TCGTCGCCCTGACATGTATCTCTTGGTGTTGGAGGGACTTTAGGAACGCA
AGTTCAGGACACAGGGAGGCACGACTCCGCCTGCTGTTTGTACACATATG
TTGTACTCACAGGCGGAGAGTGTGGTTGATTACCCTGTTTAAGCTCTTGT
ATCTTGTCTTGCCCGGGGTGCCCCAGTCTGTCAGGTACACCCTGTCGCAG
CCGTTCCTCCTGCCGTACAATGCTGATGACTGTGGCAAAAAAAAAAAAAA
AAACGTATGCAAATCGAACCTTGGTCGGCGCAAAGCAGAAAAATCGCGCA
GCATGGACACCGCAGAATTTTCGAATTTTCGTCAAGCCAAGCGTACATGT
TAAAAAAAACACACACACATACCGAAGACGCAGCGGCCCCGACAGAGCGG
CCGCCTGAACACTAGCACGCGAGCGCTGCCACTGAGTAAATAGACGCGAG
GGCGCTCAAGCGCAGGAACACAACCGCTGTAGTCGATTAACTGAAGAGTT
TTAATGAAAGGGAAGTGTAAGTCTGCATCTGTTCATCCTCTGCTGGTATG
TGGCGGCCAGGTACGTGGAACCTTCATGCAAGTACGTTGCGAAGAAAAGT
GAAAAATACACGTCGGTTAACGTTTGTTTCCGCCGTCCGTGTGTGCGGCT
CGGTGAGGCGGGCTTGGCCCTGCTGTACTGGCTGCTGACACATAGCACGT
CTTCCAGTCGCGTGCACAATTCTCCCCCCATTTGCGGGGTTGTCTTTTTC
ACATGTGTAGCGCCTACCCGTCTCCCGATCATGCAGCGCTATGCATATAT
TTACATGCTGTTCTGTGCGTGTATTGATTCCTCCTTAATGCTGTTCTGCG
TCCCGTACACCAGGCGATGCGAAACGTGATTTGGAGAGATATGTAGATGC
GGTACAAACCCTTTAGCCCTCCGTCCGTGCCGTGTATTTTCTTCGTCGGT
TAGGAAAAAAAATAGGTACGAACACAAGAGACTGACTACCCGCACGAGTT
TATGATGATTTGGGTAGGTTTTGTGCTGGTGATTTTTTTCCCCGCAAGTT
GATCTTTGCATTCCATCCAACAACCGCCTCCTTCCGCCGCTGCCGTCCCC
TGTCCCCTCCCCCGCTGCCTTCGTTTCCGCCCACACTATCGCATCAACGA
TGGCGATGACGAACAGTATCGTACCCTCCAGAAGTACTGCAAGCTTCACG
GCATCAACGTCCGCCCGGACTGCTCACAGGCCGAGCTGGCCGTCGCTGCG
GCCAGACATTTTCAGGTACACATCTCGTAGACATTTTCAAGTACAAGTGC
ATTCCGTTCTCGTCGTCTCTCTTCCTTTGTGCTGGGTGTTAGGGGCTCAG
TAGGAAGTTTTATGTGCTAACGGGGGGGGGGGGGTGCTCTGGGAGAATCT
TCCTGGCTCCGTTCCCCCTGTGTGTGAAGTTTTTAAGTTTTTTTTTTGTT
TGGGCTAGGTTGTGGAGAGGAGAGGTTGCTGGGTACGGGGCAGTCTGGCG
GGGAGGAGGCGGGAGAAAGAGAAGCAGCGTGCCCAAAGAATCTTAAGAGT
GAGTAAAAACGGTGTGGCTGGGCTCCCAGTGCCATTTTGCTGCCGCTGTC
TGTACTTTTCATGTTTCTTTTATCAGCCGGGGAACGAACTTGTAGCTAGG
ATCTCATCCCGGAACCGTCGATCCGCGCGCGAAAATCCGAAATCGAATCG
CAGGAAGCACCTTCGGTGGACGAAGAGGGTGTGATGGTGTCTTTCCTACA
GAAGGTCATCGTTCCCGACCGGCCTTTCGAGCCCACCATCGACCTCGCCC
TCTCCCGCATGGGAAGCCTTAGCGTCGACACGGCGGACCTCGGCGGCGGC
GGAGGCAGCGGCGGCGGAGGGCGGAGCGCGATGCCCAACGCCATGATGCA
CGACCACATGGACGACGGCATGAACGACGACATGGTGGACAGCATGGGAG
GGGATATGGGGGGCGGCGGCGGCGGCCGGGGAGGTACGCACGGC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1470:949..3992-

>mRNA_E-siliculosus-1a_F_contig1470.2757.1 ID=mRNA_E-siliculosus-1a_F_contig1470.2757.1|Name=mRNA_E-siliculosus-1a_F_contig1470.2757.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1470:949..3992- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACGGGTTGCGCGAGACGGTCCCCCCAGGGCCGTACTTCCCCTTCCA
CCGAGACGAGACCTACCCCAGGACTCTCTGCGTGAACTTCAAGAGGCTAG
AGATGAACGGGTTGCGCGAGACGGTCCCCCCAGGGCCGTACTTCCCCTTC
CACCGAGACGAGACCTACCCCAGGACTCTCTGCGTGAACTTCAAGAGGCT
AGAGTATCGTACCCTCCAGAAGTACTGCAAGCTTCACGGCATCAACGTCC
GCCCGGACTGCTCACAGGCCGAGCTGGCCGTCGCTGCGGCCAGACATTTT
CAGTATCGTACCCTCCAGAAGTACTGCAAGCTTCACGGCATCAACGTCCG
CCCGGACTGCTCACAGGCCGAGCTGGCCGTCGCTGCGGCCAGACATTTTC
AGGAAGCACCTTCGGTGGACGAAGAGGGTGTGATGGTGTCTTTCCTACAG
AAGGTCATCGTTCCCGACCGGCCTTTCGAGCCCACCATCGACCTCGCCCT
CTCCCGCATGGGAAGCCTTAGCGTCGACACGGCGGACCTCGGCGGCGGCG
GAGGCAGCGGCGGCGGAGGGCGGAGCGCGATGCCCAACGCCATGATGCAC
GACCACATGGACGACGGCATGAACGACGACATGGTGGACAGCATGGGAGG
GGATATGGGGGGCGGCGGCGGCGGCCGGGGAGGTACGCACGGCGAAGCAC
CTTCGGTGGACGAAGAGGGTGTGATGGTGTCTTTCCTACAGAAGGTCATC
GTTCCCGACCGGCCTTTCGAGCCCACCATCGACCTCGCCCTCTCCCGCAT
GGGAAGCCTTAGCGTCGACACGGCGGACCTCGGCGGCGGCGGAGGCAGCG
GCGGCGGAGGGCGGAGCGCGATGCCCAACGCCATGATGCACGACCACATG
GACGACGGCATGAACGACGACATGGTGGACAGCATGGGAGGGGATATGGG
GGGCGGCGGCGGCGGCCGGGGAGGTACGCACGGC
back to top