mRNA_E-siliculosus-1a_F_contig1034.275.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1034.275.1
Unique NamemRNA_E-siliculosus-1a_F_contig1034.275.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: D7FS66_ECTSI (Putative cyclin A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS66_ECTSI)

HSP 1 Score: 585 bits (1508), Expect = 5.960e-209
Identity = 291/292 (99.66%), Postives = 291/292 (99.66%), Query Frame = 1
Query:  166 LPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVRQ 1041
            LPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAA ELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVRQ
Sbjct:   50 LPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVRQ 341          
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: A0A6H5L2E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E4_9PHAE)

HSP 1 Score: 573 bits (1478), Expect = 1.130e-200
Identity = 285/292 (97.60%), Postives = 288/292 (98.63%), Query Frame = 1
Query:  166 LPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVRQ 1041
            LPPGVKDIDAGVSE+GESHLLNPDYAK+HALYLREQEKRNRPVAYIG KQ+DMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLT ITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAA ELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFG EGDVRQ
Sbjct:  290 LPPGVKDIDAGVSEQGESHLLNPDYAKQHALYLREQEKRNRPVAYIGTKQRDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTSITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGEGDVRQ 581          
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: A0A835YJW4_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJW4_9STRA)

HSP 1 Score: 234 bits (597), Expect = 2.760e-69
Identity = 128/266 (48.12%), Postives = 169/266 (63.53%), Query Frame = 1
Query:  226 LNPDYAKEHALYLREQEK--RNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHF 1017
             N  Y  ++  +LR QE   + RP AY+   Q+D+R  MRS L+DW+ EVC +F+L   T F  ++L+DRSLSAF V R  LQLLGCAC+++A+K+EE + P+   L +ISD+ YT ++++ ME  V+  L F ++C+TP +F   F  AA  NAR+  L  YLLEL L DY  VSLLPS KAAAA  LAR T+   G    AW+     +TGY+A  LEPCVRR+  LH  AE + LHA+RD+Y K   HRVA V C  E  L F
Sbjct:  212 FNRCYGAQYQHWLRTQEANLKFRPTAYLTQVQRDLRAVMRSTLIDWLVEVCTEFRLQPGTPFLVIELLDRSLSAFCVNRDNLQLLGCACLLVAAKFEEEHPPSVNSLVYISDSAYTISDMVRMEGQVLQHLNFAVSCVTPHHFAAEFSAAAGCNARQGYLCLYLLELALLDYSLVSLLPSHKAAAAALLARMTMRRGG---GAWSALARQFTGYSAATLEPCVRRMRVLHESAENSKLHAIRDRYCKQERHRVALVCCLKESELVF 474          
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: UPI0003F0A1E2 (G2/mitotic-specific cyclin-A-like isoform X2 n=3 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0A1E2)

HSP 1 Score: 209 bits (532), Expect = 5.200e-60
Identity = 117/269 (43.49%), Postives = 167/269 (62.08%), Query Frame = 1
Query:  184 DIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQG-VSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEV 987
            D+DA    + +S L  PDYAK+   YL+E E+RNRP A    KQ D+  SMR +LVDW+ EV +++KL + TL+ AV+ IDR LS+  V R KLQL+G A + LA+K+EEIY P   E  +I+D+TYT+ +++ ME +V+  L F L   T   F DRF  AA+++++   +  +L EL LQ+Y+  +    S  AA+A+ LA  TLHP   P   WT   EHYT +   ++ PCVR LH+  V +  N   AVR+KYK   LH+V+ +
Sbjct:  173 DLDA----KADSQLFVPDYAKDIFSYLKEAEQRNRPKANYMKKQPDITTSMRCILVDWLVEVAEEYKLHNETLYLAVNYIDRFLSSMSVLRSKLQLVGAASMFLAAKFEEIYPPEVGEFVYITDDTYTKKQVLRMEHLVLKVLSFDLAIPTINVFLDRFLRAAEADSKAECMARFLAELTLQEYEPYIRYSQSTIAASAVCLANHTLHPNQQP---WTATLEHYTSFTFQDILPCVRDLHHTFVNSVNNQQQAVREKYKTQKLHQVSLI 434          
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: A0A2K1L0Q4_PHYPA (Cyclin N-terminal domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L0Q4_PHYPA)

HSP 1 Score: 202 bits (514), Expect = 5.490e-57
Identity = 116/276 (42.03%), Postives = 168/276 (60.87%), Query Frame = 1
Query:  181 KDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVA-YIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLV-----SYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVT 990
            +D+D G S+      +   YA +  ++LR  E + RP   ++ A QKD+ PSMR +L+DW+ EV +++KL   TL+  V  IDR LS   V R +LQLLG +C+++A+KYEEI AP  EE  +I+DNTY R E++ ME  V++ L+F LT  T  +F  RF  AA+++ +  +LV     +YL EL L +Y  +  LPS+ AA+A+Y+AR TL P  CP   W    +HYTGY A  LE CVR +H L   ++   L A+R+KY+      VA +T
Sbjct:  196 EDLDTGHSDP----QMCSAYAADIYMHLRMAEVKRRPTTDFMEAMQKDINPSMRGILIDWLVEVAEEYKLVPDTLYLTVAYIDRFLSCNTVTRQRLQLLGVSCMLIAAKYEEICAPRVEEFCYITDNTYQREEVLEMERKVLSQLKFELTTPTTKSFLRRFIRAAQASCKASTLVLEFLGNYLAELTLTEYSMLGFLPSMVAASAVYMARLTLDPSSCP---WDATLQHYTGYKASALEKCVRDIHDLQRNSKNCTLPAIREKYRLHKFKCVATLT 464          
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: A0A836CJX2_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX2_9STRA)

HSP 1 Score: 195 bits (496), Expect = 7.220e-56
Identity = 115/280 (41.07%), Postives = 166/280 (59.29%), Query Frame = 1
Query:  211 GESHLLNPD----YAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGV-SLLPSLKAAAALYLARQTL--HPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEG 1029
            G+ H LN      Y + +  +L  QE + RP  Y+  +Q ++  + RS +VDW+ EVC  +KL + TLF  V+L+DRSL+A    R  LQ L CAC++LA+K+EE  AP++  LA ISDN ++RA ++  E  V+ AL+FR++C TP  +   +C AA  +AR+  L  Y+LEL L DY  V + +PSL+AAAA +LAR T+          AW      ++GY A +LE C RR+H LH  AE   L AVR+K+ +    RVA + CA + +L     G
Sbjct:   16 GDEHDLNVAFLQCYGQHYVAWLYVQELQLRPADYMH-RQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATMCTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREKHARPGALRVAALCCASDAHLRCALRG 294          
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: C3YZV0_BRAFL (Cyclin N-terminal domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YZV0_BRAFL)

HSP 1 Score: 193 bits (490), Expect = 3.520e-55
Identity = 115/271 (42.44%), Postives = 161/271 (59.41%), Query Frame = 1
Query:  178 VKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQG-VSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEV 987
            ++DIDA     G+S L   +YA E   YLRE E R+RP      KQ D+  SMR +LVDW+ EV +++KL + TL+ AV  IDR LS+  V R KLQL+G A + LASKYEEIY P   E  +I+D+TYT+ +++ ME +++  L F +   T   FQ RF  AAK N++  SL  YL EL LQ+ +  +  +PS  AAA+L LA+ TL+      + WT    HY+GY   +L PCV+ +H     A  +   AVR+KY+    H V+ +
Sbjct:   50 IEDIDA----RGDSVLEVAEYATEIFQYLREAELRHRPKPGYMKKQPDITNSMRCILVDWLVEVAEEYKLHNETLYLAVSYIDRFLSSMSVLRSKLQLVGTAAMFLASKYEEIYPPDVGEFVYITDDTYTKKQVLRMEHLILKVLSFDVAVPTINCFQKRFLQAAKVNSKTESLAMYLAELTLQEGETFLKYVPSTIAAASLCLAQHTLN-----MQPWTPTLMHYSGYTLADLLPCVQDMHRSFQAAPSSQQQAVREKYRSPKYHGVSTI 311          
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: G9JVC5_BRAJU (Cyclin A3-1 (Fragment) n=1 Tax=Brassica juncea TaxID=3707 RepID=G9JVC5_BRAJU)

HSP 1 Score: 190 bits (482), Expect = 1.190e-54
Identity = 116/265 (43.77%), Postives = 162/265 (61.13%), Query Frame = 1
Query:  256 LYLREQE--KRNRP-VAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAK-----SNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEE 1026
            +YLR+ E  +++RP + YI   Q+D+ P+MR VLVDW+ EV +++KL S TL+ AV  IDR LS   V R KLQLLG + +++ASKYEEI  P  E+  +I+DNTYT+ EI+ ME  ++ ALQF L   T   F  RF   A+     S+ +   L SYL EL + DY  +  LPS+ AA+A+YLAR  + P+  P   W+   E YT Y AG+L  CV  +H L++  +G  L AVR+KYK+     VA +  + E  L F E+
Sbjct:    3 VYLRQLEVKEKSRPLIDYIEKVQRDVTPNMRGVLVDWLVEVAEEYKLLSDTLYLAVSYIDRFLSLRTVNRQKLQLLGVSAMLIASKYEEITPPNVEDFCYITDNTYTKQEIVKMEADILLALQFELGNPTTNTFLRRFTRVAQEDFNMSHLQMEFLCSYLSELSMLDYSSLKFLPSVVAASAVYLARFIIRPKQHP---WSVMLEEYTRYKAGDLRECVCMIHDLYLSRKGGALQAVREKYKQHKFKCVATMPVSPELPLTFFED 264          
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: A0A817B2C1_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A817B2C1_BRANA)

HSP 1 Score: 190 bits (482), Expect = 2.020e-54
Identity = 115/275 (41.82%), Postives = 162/275 (58.91%), Query Frame = 1
Query:  238 YAKEHALYLREQEKR--NRPVA-YIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARE-----RSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVR 1038
            Y  +   YLRE E +   RP+  YI   Q D+ PSMR VLVDW+ EV +++KL S TL+  V  +DR LSA  + R +LQL+G + +++ASKYEEI  P  E+  +I+DNT+TR ++++ME  ++ ALQF L C T   F  RF   A+ +  E       L  YL EL L DY  V  LPSL A++A++LAR  + P+  P   W +  E YT Y A +L+ CV  +H L++   GN L AVR+KYK+     VA +  + E  L F E+  +R
Sbjct:    5 YVADICAYLREMEGKLKQRPLHDYIEKVQNDITPSMRGVLVDWLVEVAEEYKLVSDTLYLTVSYVDRFLSAKPIHRQRLQLVGVSAMLIASKYEEISPPKVEDFVYITDNTFTRQDVVSMEADILLALQFELGCPTIKTFLRRFTRVAQEDFNESLLQIEFLCCYLSELSLLDYTCVKFLPSLLASSAVFLARFIIRPKQHP---WNQMLEEYTKYKASDLQQCVGIIHDLYLSRRGNVLEAVRNKYKQHKFKCVATLPVSPELPLAFFEDVTIR 276          
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: M4FHY1_BRARP (Cyclin N-terminal domain-containing protein n=13 Tax=Brassiceae TaxID=981071 RepID=M4FHY1_BRARP)

HSP 1 Score: 192 bits (487), Expect = 3.820e-54
Identity = 120/298 (40.27%), Postives = 171/298 (57.38%), Query Frame = 1
Query:  169 PPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKR--NRPVA-YIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARE-----RSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVR 1038
            PP   D ++G  +     +  P Y  +   YLRE E +   RP+  YI   Q D+ PSMR VLVDW+ EV +++KL S TL+  V  +DR LSA  + R +LQL+G + +++ASKYEEI  P  E+  +I+DNT+TR ++++ME  ++ ALQF L C T   F  RF   A+ +  E       L  YL EL L DY  V  LPSL A++A++LAR  + P+  P   W +  E YT Y A +L+ CV  +H L++   GN L AVR+KYK+     VA +  + E  L F E+  +R
Sbjct:   72 PPPALDFESGSVDP---QMCGP-YVADICAYLREMEGKLKQRPLHDYIEKVQNDITPSMRGVLVDWLVEVAEEYKLVSDTLYLTVSYVDRFLSAKPIHRQRLQLVGVSAMLIASKYEEISPPKVEDFVYITDNTFTRQDVVSMEADILLALQFELGCPTIKTFLRRFTRVAQEDFNESLLQIEFLCCYLSELSLLDYTCVKFLPSLLASSAVFLARFIIRPKQHP---WNQMLEEYTKYKASDLQQCVGIIHDLYLSRRGNVLEAVRNKYKQHKFKCVATMPVSPELPLAFFEDVTIR 362          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS66_ECTSI5.960e-20999.66Putative cyclin A n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L2E4_9PHAE1.130e-20097.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJW4_9STRA2.760e-6948.12Cyclin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
UPI0003F0A1E25.200e-6043.49G2/mitotic-specific cyclin-A-like isoform X2 n=3 T... [more]
A0A2K1L0Q4_PHYPA5.490e-5742.03Cyclin N-terminal domain-containing protein n=2 Ta... [more]
A0A836CJX2_9STRA7.220e-5641.07Cyclin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
C3YZV0_BRAFL3.520e-5542.44Cyclin N-terminal domain-containing protein n=1 Ta... [more]
G9JVC5_BRAJU1.190e-5443.77Cyclin A3-1 (Fragment) n=1 Tax=Brassica juncea Tax... [more]
A0A817B2C1_BRANA2.020e-5441.82(rape) hypothetical protein n=1 Tax=Brassica napus... [more]
M4FHY1_BRARP3.820e-5440.27Cyclin N-terminal domain-containing protein n=13 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1034contigE-siliculosus-1a_F_contig1034:26305..29482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1044
Model size1130
Exons3
Ec32 orthologEc-01_000740.1
Ec32 ortholog descriptionPutative cyclin A
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03009,ko03032,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.D
EggNOG OGsCOG5024@1,KOG0654@2759
EggNOG free text desc.cell division
GOsGO:0000003,GO:0000070,GO:0000082,GO:0000083,GO:0000086,GO:0000278,GO:0000280,GO:0000307,GO:0000819,GO:0001932,GO:0001939,GO:0001940,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006325,GO:0006355,GO:0006464,GO:0006468,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007096,GO:0007127,GO:0007135,GO:0007140,GO:0007141,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007405,GO:0007422,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008356,GO:0009058,GO:0009059,GO:0009555,GO:0009556,GO:0009653,GO:0009790,GO:0009791,GO:0009794,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010015,GO:0010101,GO:0010102,GO:0010311,GO:0010374,GO:0010389,GO:0010440,GO:0010444,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010639,GO:0010948,GO:0010965,GO:0015630,GO:0016043,GO:0016310,GO:0016538,GO:0016569,GO:0016570,GO:0016572,GO:0016579,GO:0017145,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022622,GO:0023052,GO:0030071,GO:0030154,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033301,GO:0034293,GO:0034641,GO:0034645,GO:0035186,GO:0035556,GO:0035561,GO:0036211,GO:0036445,GO:0042023,GO:0042127,GO:0042325,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043549,GO:0043934,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044786,GO:0044839,GO:0044843,GO:0045120,GO:0045165,GO:0045170,GO:0045448,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045859,GO:0045893,GO:0045930,GO:0045935,GO:0045995,GO:0046483,GO:0048103,GO:0048145,GO:0048146,GO:0048229,GO:0048232,GO:0048236,GO:0048285,GO:0048364,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048527,GO:0048528,GO:0048580,GO:0048582,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051098,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051321,GO:0051338,GO:0051445,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055057,GO:0055059,GO:0060255,GO:0061351,GO:0061695,GO:0061982,GO:0061983,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0072089,GO:0080090,GO:0090068,GO:0090304,GO:0090558,GO:0090627,GO:0090696,GO:0090697,GO:0090698,GO:0097123,GO:0097124,GO:0098722,GO:0098772,GO:0098813,GO:0099402,GO:0140013,GO:0140014,GO:1901360,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902494,GO:1902554,GO:1902680,GO:1902749,GO:1902806,GO:1902808,GO:1902911,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1905392,GO:1905393,GO:1905818,GO:1905819,GO:1990234,GO:2000026,GO:2000038,GO:2000112,GO:2000123,GO:2000241,GO:2000816,GO:2001141,GO:2001251
KEGG ModuleM00693
KEGG Pathwayko03008,ko04110,ko04152,ko04218,ko04914,ko05161,ko05165,ko05169,ko05203,map03008,map04110,map04152,map04218,map04914,map05161,map05165,map05169,map05203
KEGG TC2.A.40.6
KEGG koko:K06627,ko:K14521,ko:K14611,ko:K21777
Preferred nameCCNA2
Seed eggNOG ortholog2880.D7FS66
Seed ortholog evalue6.3e-164
Seed ortholog score583.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1034.275.1prot_E-siliculosus-1a_F_contig1034.275.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1034 26305..29396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927538.1249301-CDS-E-siliculosus-1a_F_contig1034:26304..263301622927538.1249301-CDS-E-siliculosus-1a_F_contig1034:26304..26330Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1034 26305..26330 +
1696318574.3483424-CDS-E-siliculosus-1a_F_contig1034:26304..263301696318574.3483424-CDS-E-siliculosus-1a_F_contig1034:26304..26330Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1034 26305..26330 +
1622927538.1359344-CDS-E-siliculosus-1a_F_contig1034:26436..268181622927538.1359344-CDS-E-siliculosus-1a_F_contig1034:26436..26818Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1034 26437..26818 +
1696318574.370732-CDS-E-siliculosus-1a_F_contig1034:26436..268181696318574.370732-CDS-E-siliculosus-1a_F_contig1034:26436..26818Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1034 26437..26818 +
1622927538.1470702-CDS-E-siliculosus-1a_F_contig1034:28760..293961622927538.1470702-CDS-E-siliculosus-1a_F_contig1034:28760..29396Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1034 28761..29396 +
1696318574.3797312-CDS-E-siliculosus-1a_F_contig1034:28760..293961696318574.3797312-CDS-E-siliculosus-1a_F_contig1034:28760..29396Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1034 28761..29396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927538.1560464-UTR-E-siliculosus-1a_F_contig1034:29396..294821622927538.1560464-UTR-E-siliculosus-1a_F_contig1034:29396..29482Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1034 29397..29482 +
1696318574.3888772-UTR-E-siliculosus-1a_F_contig1034:29396..294821696318574.3888772-UTR-E-siliculosus-1a_F_contig1034:29396..29482Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1034 29397..29482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1034.275.1

>prot_E-siliculosus-1a_F_contig1034.275.1 ID=prot_E-siliculosus-1a_F_contig1034.275.1|Name=mRNA_E-siliculosus-1a_F_contig1034.275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=348bp
MRRRRGSGRRRRSKDGSSCSSQPPARPAAAAAQQRVGGARKPHAQQQQQQ
QQQQQLPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAY
IGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEV
PRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVV
VNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSL
LPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLH
YLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVRQ*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1034:26305..29482+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1034.275.1 ID=mRNA_E-siliculosus-1a_F_contig1034.275.1|Name=mRNA_E-siliculosus-1a_F_contig1034.275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3178bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1034:26305..29482+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGTCGGCGGAGAGGGAGCGGGCGGTAAGAGCACGTGTGGCGAGGGCG GTGGTGGTGGCGGCGACCCAGCTGCTGCTGCTGCTGCTGCTGCTGCTACA GCTGCCGCCGAAGGCGGCGGCTGCGCTGACAGCAGGCGGAGAAGTAAAGA CGGCAGCAGCTGCTCGAGCCAACCACCAGCACGGCCGGCGGCGGCGGCGG CTCAGCAGCGGGTCGGCGGGGCGCGGAAACCACACGCACAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCTTCCGCCGGGGGTGAAAGACATCGACGC CGGGGTGTCGGAGGAGGGGGAGTCCCACCTGCTGAATCCCGACTACGCCA AGGAGCACGCGCTGTACCTGCGCGAGCAGGAGAAGCGGAACAGGCCGGTG GCCTACATCGGCGCGAAGCAGAAGGACATGCGGCCGAGCATGAGGAGCGT CCTCGTGGATTGGATCTGCGAGGTCTGCGACCAGTTCAAGCTGTCTTCGA GAACTCTGTTTCAGGTAGGCGGGCGAGCGCGTTGTTGGGGGTGCATGCAC GTTCTCCGTCTTTTTGAAAAATGGGCGCGGGAACGGTCGGATATGTTGGA GAAATATTACTACAAGTAAGACGGCTCGTCTTCGGTGACATGCCCCTTTT CAGCAGCACCTGCTAGCGCAAGGTACCCCGCCCCGCGCGCGCGCTTTCTG CTCTCGAAAACACGCGTGCATTATATATTGCTTGTCCTCACGCACTACGC CCGTTCCTTGGTTAGCTCTCAAAAATTTGAATTTCCAACTACATGTATGT AAGCATAGTCTAGGTCTGTGTGGAGTCTCCCCGTCGTGTGTGTGGAGAAC GCTGCCCTTCCTCCACCTACAGCAGTACACCCAACCTCCCCGATGGTTGT ATCTACATAAATCGTTCCCGCTTCGTGGTATTGTTGTGATAATTCTCTTG GTGCCTACAACAATGAGCGCTACCCCCGTATTTTTTCGCGATACAGCAGT TTACGGCAGTAGTTCAAACTTTTTGTTCTCAAGCCTATGCATATGTATTT TCCCGATCACCCCTTTCGCTGACGCGCGACATTCCAAGTTCTTTTTAGAA GATGAATATATTGCTACTTATCCGTTAGAGGTACTATGATCATATTATAC CATACACCATACCGCTGTCCGACGATCACGCCTTGTTTGAACAACTTTGA TCTCTGTGAATGGCATCGTTAACTGTAACGAGTCGCAACACTACCATGAA AAGAGATCCGGCTTTTGATATGAAATACAGCCATTGGACTATTCTGTTGT GTAGCTTGAAGAGGAACCAAAAAATCCGAGCTTATGGAAGGAAGACTACA TCGCAGCATTTGACAAGGTTAAGGCTTAAACGCTTGCCTGATTTTAATGG ACGCACTGCCCAACACCAAGCAATGGAGAGCTTCGCAAACAGACACGTTA TTATACCAAACCATGTGCGTTTAGAGAGTCCGCAGCGGATTATTTTCGTG GTCGAGGTGCTTTGGTGCTCTCTTCGTTATCACGGTACAATCAAGTCTTT GTTGGCAAGAGATCAATACAGTAGGGGGTAATGCCCGACGTGCGATTGTA CCGCTTGACCGCTGATGCGTTGTCCAATTCCCGAACACATTTGTTTACAT ACCAATGCTACTCCTTCACATGTATAGAGACGAAGCTACCAAACGCTTGA CATGTCTGATTATCTTTTGCCCCAGACATTTTTTTTTCTCGCCTTGTGTG GATAATTTGGGTGTTTTCTCGCACCGATTCTCATCAGGTGTGCTAGGGCA TGACACCAAAAGCACGTGCGTGCACGGCAGTCATGCGTAGTCCGATGGAC GAGTCCTGAATGTTGAATATTGTACGTGCTCACATTCGTTTATGATGGCA TCAGCTTCGATACCCTTGGCATGGCTTCGACGTCGTCACGCCATGTTATA GCAGGGAAATTTTTGTTGGCCAGCGATATGTAGAAAATTCTCCGTGTCTC TCGTTCTCTCAGCCTGCCCGTGAAGTTCTTGCATCCAGGCAAAGCCCGAG CTCTTACTTTTGACGACGACGACGCGCATGCTCCTATCTCTCAGAGTTTG AAACGCGGCGCGTCTTTCTCTCTCTTCGGCGGCACTCACTGGTTTCGCGT CTCCCCTCGCCCCCCCCACACACATGCCCTCGCTCCAAACTGTCGACACT CTCAGACGTCTTGTTTGAATCGCGTCTGCACGTCTTGTGCTCTGTTACTT ACTGATTTCGCGTCCCCCCCCCCCCCCCCCCCCCCCCCCGACCCCCCCCC CCCCCCCACCCCCCCACCCCCCCCCCCCACCCCGCCCCGCCCGCCGCCCC GCNNNNNNNNNNCACCCTCCCGAGTTTTTTTTTTACCGCGTCCGCCCCGC TTTGTTTCTTTTTCTTTCTTATTTCGCGCCCCCCCCCCCCCCCCCCACCC CGTTAGGCGGTGGACCTGATCGACCGAAGCCTGTCGGCGTTCGAAGTTCC CCGGGGGAAGCTTCAGCTGCTGGGGTGCGCCTGCGTGGTCCTGGCCTCAA AGTACGAGGAGATCTACGCCCCGACGGCCGAAGAGCTGGCGCACATCTCC GACAACACCTACACCCGTGCGGAGATCATTGCCATGGAGCTGGTGGTCGT GAACGCGCTCCAGTTCCGGCTGACGTGCATCACCCCGTGCAACTTCCAGG ACCGCTTCTGCCTGGCGGCGAAATCAAACGCCCGCGAGCGGTCCCTCGTG TCGTACCTCTTGGAGCTCCTCCTGCAAGACTACCAAGGGGTGAGCCTGCT GCCGTCGCTGAAGGCCGCGGCTGCGCTGTACCTGGCTCGGCAGACGCTGC ACCCCAGGGGCTGCCCGCGCGAGGCTTGGACGAGGCAGACGGAGCACTAC ACGGGCTACGCTGCCGGGGAGCTGGAGCCGTGCGTGCGGCGGCTTCACTA CCTGCACGTCAGGGCCGAGGGGAACAACCTCCACGCCGTCAGGGACAAGT ACAAGAAGTCGGCGCTGCACCGAGTTGCGGAGGTCACTTGTGCCCTTGAG GACTACCTCCATTTCGGGGAGGAAGGGGATGTCCGCCAGTAGCAGGGTTA GTACGAGGGGTGTTCTGTGTGAGTGTCTCCGCGCGCGGTGCCCTTTTATG TGCTACGACGGAGATTTTGGGTTTGATA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1034:26305..29482+

>mRNA_E-siliculosus-1a_F_contig1034.275.1 ID=mRNA_E-siliculosus-1a_F_contig1034.275.1|Name=mRNA_E-siliculosus-1a_F_contig1034.275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2088bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1034:26305..29482+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGTCGGCGGAGAGGGAGCGGGCGATGCGTCGGCGGAGAGGGAGCGGG
CGCAGGCGGAGAAGTAAAGACGGCAGCAGCTGCTCGAGCCAACCACCAGC
ACGGCCGGCGGCGGCGGCGGCTCAGCAGCGGGTCGGCGGGGCGCGGAAAC
CACACGCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTTCCGCCG
GGGGTGAAAGACATCGACGCCGGGGTGTCGGAGGAGGGGGAGTCCCACCT
GCTGAATCCCGACTACGCCAAGGAGCACGCGCTGTACCTGCGCGAGCAGG
AGAAGCGGAACAGGCCGGTGGCCTACATCGGCGCGAAGCAGAAGGACATG
CGGCCGAGCATGAGGAGCGTCCTCGTGGATTGGATCTGCGAGGTCTGCGA
CCAGTTCAAGCTGTCTTCGAGAACTCTGTTTCAGCAGGCGGAGAAGTAAA
GACGGCAGCAGCTGCTCGAGCCAACCACCAGCACGGCCGGCGGCGGCGGC
GGCTCAGCAGCGGGTCGGCGGGGCGCGGAAACCACACGCACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCTTCCGCCGGGGGTGAAAGACATCGAC
GCCGGGGTGTCGGAGGAGGGGGAGTCCCACCTGCTGAATCCCGACTACGC
CAAGGAGCACGCGCTGTACCTGCGCGAGCAGGAGAAGCGGAACAGGCCGG
TGGCCTACATCGGCGCGAAGCAGAAGGACATGCGGCCGAGCATGAGGAGC
GTCCTCGTGGATTGGATCTGCGAGGTCTGCGACCAGTTCAAGCTGTCTTC
GAGAACTCTGTTTCAGGCGGTGGACCTGATCGACCGAAGCCTGTCGGCGT
TCGAAGTTCCCCGGGGGAAGCTTCAGCTGCTGGGGTGCGCCTGCGTGGTC
CTGGCCTCAAAGTACGAGGAGATCTACGCCCCGACGGCCGAAGAGCTGGC
GCACATCTCCGACAACACCTACACCCGTGCGGAGATCATTGCCATGGAGC
TGGTGGTCGTGAACGCGCTCCAGTTCCGGCTGACGTGCATCACCCCGTGC
AACTTCCAGGACCGCTTCTGCCTGGCGGCGAAATCAAACGCCCGCGAGCG
GTCCCTCGTGTCGTACCTCTTGGAGCTCCTCCTGCAAGACTACCAAGGGG
TGAGCCTGCTGCCGTCGCTGAAGGCCGCGGCTGCGCTGTACCTGGCTCGG
CAGACGCTGCACCCCAGGGGCTGCCCGCGCGAGGCTTGGACGAGGCAGAC
GGAGCACTACACGGGCTACGCTGCCGGGGAGCTGGAGCCGTGCGTGCGGC
GGCTTCACTACCTGCACGTCAGGGCCGAGGGGAACAACCTCCACGCCGTC
AGGGACAAGTACAAGAAGTCGGCGCTGCACCGAGTTGCGGAGGTCACTTG
TGCCCTTGAGGACTACCTCCATTTCGGGGAGGAAGGGGATGTCCGCCAGT
AGGCGGTGGACCTGATCGACCGAAGCCTGTCGGCGTTCGAAGTTCCCCGG
GGGAAGCTTCAGCTGCTGGGGTGCGCCTGCGTGGTCCTGGCCTCAAAGTA
CGAGGAGATCTACGCCCCGACGGCCGAAGAGCTGGCGCACATCTCCGACA
ACACCTACACCCGTGCGGAGATCATTGCCATGGAGCTGGTGGTCGTGAAC
GCGCTCCAGTTCCGGCTGACGTGCATCACCCCGTGCAACTTCCAGGACCG
CTTCTGCCTGGCGGCGAAATCAAACGCCCGCGAGCGGTCCCTCGTGTCGT
ACCTCTTGGAGCTCCTCCTGCAAGACTACCAAGGGGTGAGCCTGCTGCCG
TCGCTGAAGGCCGCGGCTGCGCTGTACCTGGCTCGGCAGACGCTGCACCC
CAGGGGCTGCCCGCGCGAGGCTTGGACGAGGCAGACGGAGCACTACACGG
GCTACGCTGCCGGGGAGCTGGAGCCGTGCGTGCGGCGGCTTCACTACCTG
CACGTCAGGGCCGAGGGGAACAACCTCCACGCCGTCAGGGACAAGTACAA
GAAGTCGGCGCTGCACCGAGTTGCGGAGGTCACTTGTGCCCTTGAGGACT
ACCTCCATTTCGGGGAGGAAGGGGATGTCCGCCAGTAG
back to top