Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10335.271.1 vs. uniprot
Match: A0A6H5KWR5_9PHAE (Myotubularin phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWR5_9PHAE) HSP 1 Score: 51.2 bits (121), Expect = 5.320e-5 Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1 Query: 88 MVIPTASKSVPVSTGGRANSSSAGEACRAGPFSAEDG 198
MVI T+SKSV VSTGGRA+S SAG A R GPFSAEDG
Sbjct: 1 MVISTSSKSVTVSTGGRADSKSAGGARRPGPFSAEDG 37
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 354 |
| Model size | 356 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927537.4278767-CDS-E-siliculosus-1a_F_contig10335:1073..1427 | 1622927537.4278767-CDS-E-siliculosus-1a_F_contig10335:1073..1427 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10335 1074..1427 + |
| 1696318574.0637562-CDS-E-siliculosus-1a_F_contig10335:1073..1427 | 1696318574.0637562-CDS-E-siliculosus-1a_F_contig10335:1073..1427 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10335 1074..1427 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10335.271.1 >prot_E-siliculosus-1a_F_contig10335.271.1 ID=prot_E-siliculosus-1a_F_contig10335.271.1|Name=mRNA_E-siliculosus-1a_F_contig10335.271.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=118bp
AAAATAAAAGLDQWGIGGGLKGALSSASGMVIPTASKSVPVSTGGRANSS
SAGEACRAGPFSAEDGGSAAASSGPAVVPAAAATRDRLHGNNDDVGSSGP
PRLSAGGGAGPGSGGAAA back to topmRNA from alignment at E-siliculosus-1a_F_contig10335:1074..1429+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10335.271.1 ID=mRNA_E-siliculosus-1a_F_contig10335.271.1|Name=mRNA_E-siliculosus-1a_F_contig10335.271.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=356bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10335:1074..1429+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGCTGCTGCGACAGCAGCGGCGGCGGGCCTAGACCAGTGGGGCATCGG
AGGGGGCTTGAAGGGAGCGCTATCGTCGGCTAGCGGCATGGTCATCCCGA
CGGCGTCGAAGAGCGTTCCGGTGAGTACGGGAGGGCGCGCTAACAGCAGT
AGCGCGGGAGAAGCCTGCCGCGCTGGGCCTTTCTCGGCCGAAGATGGCGG
TTCAGCCGCTGCGTCGTCCGGCCCTGCGGTGGTGCCGGCTGCGGCAGCAA
CCCGGGACCGCCTCCACGGCAACAACGACGACGTCGGCTCCAGCGGTCCA
CCCCGCCTCAGCGCTGGTGGTGGCGCAGGTCCCGGAAGCGGCGGCGCTGC
TGCTGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10335:1074..1429+ >mRNA_E-siliculosus-1a_F_contig10335.271.1 ID=mRNA_E-siliculosus-1a_F_contig10335.271.1|Name=mRNA_E-siliculosus-1a_F_contig10335.271.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10335:1074..1429+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGCTGCTGCGACAGCAGCGGCGGCGGGCCTAGACCAGTGGGGCATCGG
AGGGGGCTTGAAGGGAGCGCTATCGTCGGCTAGCGGCATGGTCATCCCGA
CGGCGTCGAAGAGCGTTCCGGTGAGTACGGGAGGGCGCGCTAACAGCAGT
AGCGCGGGAGAAGCCTGCCGCGCTGGGCCTTTCTCGGCCGAAGATGGCGG
TTCAGCCGCTGCGTCGTCCGGCCCTGCGGTGGTGCCGGCTGCGGCAGCAA
CCCGGGACCGCCTCCACGGCAACAACGACGACGTCGGCTCCAGCGGTCCA
CCCCGCCTCAGCGCTGGTGGTGGCGCAGGTCCCGGAAGCGGCGGCGCTGC
TGCTGCCGCTGCTGCGACAGCAGCGGCGGCGGGCCTAGACCAGTGGGGCA
TCGGAGGGGGCTTGAAGGGAGCGCTATCGTCGGCTAGCGGCATGGTCATC
CCGACGGCGTCGAAGAGCGTTCCGGTGAGTACGGGAGGGCGCGCTAACAG
CAGTAGCGCGGGAGAAGCCTGCCGCGCTGGGCCTTTCTCGGCCGAAGATG
GCGGTTCAGCCGCTGCGTCGTCCGGCCCTGCGGTGGTGCCGGCTGCGGCA
GCAACCCGGGACCGCCTCCACGGCAACAACGACGACGTCGGCTCCAGCGG
TCCACCCCGCCTCAGCGCTGGTGGTGGCGCAGGTCCCGGAAGCGGCGGCG
CTGCTGCT back to top
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