mRNA_E-siliculosus-1a_F_contig1458.2680.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1458.2680.1
Unique NamemRNA_E-siliculosus-1a_F_contig1458.2680.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: A0A6H5J809_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J809_9PHAE)

HSP 1 Score: 540 bits (1390), Expect = 7.600e-190
Identity = 286/309 (92.56%), Postives = 292/309 (94.50%), Query Frame = 1
Query:   19 MPPLYQPWSAMLLSSLLVSAPFGSGVIGFSTPTLFRASSSAGGRTYARRSRSWKQRPAGRKTSSIPSMSLPAEGGQTSRSRAIGLGMASLFSLAVAPTPGLGLDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTLQPVLALVPIITLRLQLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAKVALASKRKGNAPAPVKT 945
            MP LYQPWSAMLLSSLLVSAPFGSGVIGFSTP+LFRASSSAGGRTY RRSR WK  PAGR TSSIPSMSLPAEGG TSR+RAIGLG+ASLFSLAVAPTPGL LDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTLQPVLALVPIITLRLQLDEVE+NLKDPR FGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEI+YLIRERE  GE    ADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAKVALA+KRKGNAP P KT
Sbjct:    1 MPLLYQPWSAMLLSSLLVSAPFGSGVIGFSTPSLFRASSSAGGRTYTRRSRFWKHCPAGRTTSSIPSMSLPAEGGPTSRNRAIGLGVASLFSLAVAPTPGLALDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTLQPVLALVPIITLRLQLDEVESNLKDPRLFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEISYLIREREVGGE----ADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAKVALANKRKGNAPTPAKT 305          
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: D8LLI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI5_ECTSI)

HSP 1 Score: 430 bits (1106), Expect = 8.260e-148
Identity = 221/228 (96.93%), Postives = 224/228 (98.25%), Query Frame = 1
Query:  220 MSLPAEGGQTSRSRAIGLGMASLFSLAVAPTPGLGLDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTLQPVLALVPIITLRLQLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAKVAL 903
            MSLPAEGG TSRSRAIGLGMASLFSLAVAPTPGLGLDPVRKVQEQLRIRAQEEFDNVEALASPEGGKT+QPVLALVPIITLRLQLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERES GEDGSEADTDEKDLRMYLGKCKQ FDKYLGMVLQNEIDEATDMAK+ +
Sbjct:    1 MSLPAEGGPTSRSRAIGLGMASLFSLAVAPTPGLGLDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTIQPVLALVPIITLRLQLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESGGEDGSEADTDEKDLRMYLGKCKQGFDKYLGMVLQNEIDEATDMAKLVV 228          
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: A0A835ZF78_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF78_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.770e-35
Identity = 81/168 (48.21%), Postives = 105/168 (62.50%), Query Frame = 1
Query:  397 LASPEGGKTLQPVLALVPIITLRLQLDEVENNLKDPRRFG--AALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAK 894
            LA P G KTL PVLALVPI+ LR+ LD VE+ LK     G   AL +L +  +  K+IKR FN YSDNIY    S R N YL GGA P+S++T QYLLRN+V+ +V+ LTAE+AYL+R+    G        D  DL  YL   K+SFD YL +    ++D A ++A+
Sbjct:    3 LADPTGRKTLSPVLALVPIVRLRMGLDLVESWLKLNTTEGWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLRDGGGVG------GGDTADLYTYLSAAKKSFDDYLQLAPPLDLDGAAEVAR 164          
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: A0A7R9WN96_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WN96_9STRA)

HSP 1 Score: 123 bits (309), Expect = 6.160e-28
Identity = 83/220 (37.73%), Postives = 118/220 (53.64%), Query Frame = 1
Query:  262 AIGLGMASLFSLAVAPTPGLGLDPVRK-------VQEQLRIRAQEEFDNVEALASPEGGKT-------LQPVLALVPIITLRLQLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEA 879
            A+GLG+     +A+ PTP    D + K       + EQ+RI  Q E DN++     E G           P L L+PI+ +  +L +V+  ++D  R+  ALTI+Q + ++K   K+ FNAY DNIYY  D DR N YL GGATP + Q+L YLLRNDV+ NVE L AE+ YL++  E   ED          L  +      +  KYL +V   E+++A
Sbjct:  118 AVGLGL-----IAMNPTPAQARDDLFKKNPLTNPMLEQIRIWEQAEADNIKYSGELEAGDAGNKGKVDAYPKL-LMPILEIDYELTQVKKLVRDESRWPDALTIMQQKKYEKIPFKKAFNAYGDNIYYS-DPDRANVYLGGGATPKTEQSLAYLLRNDVLTNVENLRAELEYLMKSGEKETED----------LYKFADIATNAMKKYLAIVPPGELEQA 320          
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: A0A7S3Q034_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q034_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.210e-27
Identity = 82/224 (36.61%), Postives = 121/224 (54.02%), Query Frame = 1
Query:  283 SLFSLAVAPTPGLGLDPVR---------------KVQEQLRIRAQEEFDNVE-----ALASPEGGKTLQPVLALVPIITLRLQLDEVENNLKDPRRFGAALT--ILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDM 888
            S+ S  +     L L+PV+               KV E++RI  Q E DN++     A  SP G    Q    LVPI+ ++ + DE++  +  P   G A    IL  + ++K   K+ FNA++DNIYY  D DR N YL GGA P + Q++ YL+RNDV+ NVE L AE+ YLI+E ++    G+E +T+  DL +Y+  CK    KYL +V   E+  A ++
Sbjct:   96 SIMSAVLPAAVALALNPVKASARDELFKPNPLTNKVLEKIRILEQAEADNIQYGGELAPGSPIGRD--QYAKLLVPIMIIQKEFDELDTLVHMPNGDGLAQADIILSKKQYEKLQFKKTFNAFADNIYYS-DPDRANAYLGGGAVPKNEQSIAYLIRNDVLTNVENLQAEVTYLIKEIKA----GNEMETE--DLYLYVQTCKDGMVKYLDLVPPGEVKIAKEI 310          
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: B5Y3I0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3I0_PHATC)

HSP 1 Score: 117 bits (294), Expect = 1.900e-26
Identity = 82/220 (37.27%), Postives = 118/220 (53.64%), Query Frame = 1
Query:  280 ASLFSLAVAPTPGLGLDPV-------RKVQEQLRIRAQEEFDNVE-------ALASPEGGKTLQPVLALVPIITLRLQLDEVENNLKDPR-RFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAK 894
            A +  L ++  P L  D V         V E++RI  Q E D+++         A  +G     P L LVPI+ +  +LDEVE      R  +  A  IL+ + +QK + K+ FNAYSDNIYY  D DR N YL GGATP + Q+L YLLRND++ NVEAL +EI YL++E   + ED          L +Y     ++  +Y+G+V   E+ +A ++ K
Sbjct:   58 AMISGLWLSNEPALAKDDVFRGNPLTNSVLEKIRIWEQAEADDLKYGGELERGDAGNKGKVEAYPRL-LVPILQMANELDEVERICLGSRDSWAQAQNILKQKKYQKIEFKKQFNAYSDNIYYS-DPDRANLYLGGGATPKTEQSLAYLLRNDILTNVEALQSEIEYLLKEPSESSED----------LVLYATTANRAMKRYMGIVPPGELVKARELIK 265          
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: A0A7S2RVH1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RVH1_9STRA)

HSP 1 Score: 114 bits (286), Expect = 7.710e-25
Identity = 80/209 (38.28%), Postives = 113/209 (54.07%), Query Frame = 1
Query:  292 SLAVAPTPGLGLDPVRK-------VQEQLRIRAQEEFDN-VEALASPEGGKTLQPVLA--LVPIITLRLQLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDM 888
            SL    +P L  D + K       V  Q+RI  Q+E DN V       G   ++   A  LVPI+ +    D +E  L   +   A  +IL    ++K   K++FNA++DNIYY  D DR N YL GGA+P + Q++ YL RN+++ N+EAL AE+ YL++E ES GED        KDL  Y+ K KQ+  KYL +V   E+  AT +
Sbjct:  119 SLLANTSPVLAKDEIYKSNPLTNSVLNQIRIWEQDEKDNLVYGGELAPGAPPVKDAYAQLLVPILQMAQDFDRMEELLVSGKWLEAKESILDKSCYEKIAFKKIFNAFADNIYYT-DPDRANVYLGGGASPKAVQSIAYLYRNEILTNLEALQAEVTYLLKE-ESKGEDT-------KDLFTYMSKAKQTMLKYLELVPPAEMKAATKL 318          
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: A0A1E7FHC2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHC2_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.520e-24
Identity = 76/196 (38.78%), Postives = 101/196 (51.53%), Query Frame = 1
Query:  343 VQEQLRIRAQEEFDNV------EALASPEGGKTLQPVLALVPIITLRLQLDEVE---------NNLKDPRR--FGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEA 879
            V EQLRI  Q + DN+      EA  +   GK       LVPI+ +  +L+E+          NN   P +     ALTILQ+  + K   K+ FN Y DNIYY  D DR N YL GGATP + Q++ YLLRND++ N+E L AE+ +LI+  E   E         +DL  Y      +  KYL +V  NE+ EA
Sbjct:   30 VLEQLRIWEQVDKDNMKYGGELEAGDAGNKGKVDAYPTLLVPILKIDQELNEINTLVHSGDNNNNSNKPSKDAMSKALTILQSPTYDKITFKKTFNKYGDNIYYS-DPDRANAYLGGGATPKNEQSIAYLLRNDILTNMENLRAELEFLIKTPEEENESV-------EDLYTYTAIVTSAMKKYLAIVPPNELKEA 217          
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: A0A448ZLZ7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLZ7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.600e-24
Identity = 78/224 (34.82%), Postives = 110/224 (49.11%), Query Frame = 1
Query:  271 LGMASLFSLAVAPTPGLGLDPVRK-------VQEQLRIRAQEEFDNVE-------ALASPEGGKTLQPVLALVPIITLRLQLDEVEN-------NLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEA 879
            +G  ++ +L   P+P    D + +       + EQ+RI  Q E DN++         A  +G     P L LVPI+ +  +L+E+         N         AL ILQ   ++K + K+ FN Y DNIYY  D DR N YL GGATP + Q++ YLLRNDV+ N+E L AE+ YLI+  E+  ED          L  Y   C  +  KYL  V   ++ EA
Sbjct:   64 VGAPTMIALTSIPSPADARDELFRPNPLTNPLLEQVRIMEQAEKDNIKYGGELERGDAGNKGKVDAYPSL-LVPILKIDKELNEIRTLVRSGGENKPSNEAMSQALAILQQPTYEKVNFKKTFNKYGDNIYYS-DPDRANLYLGGGATPKTEQSIAYLLRNDVLTNMENLRAELEYLIKSEENEIED----------LYSYADICTSAMKKYLAQVPPQQLKEA 275          
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: B8CC65_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC65_THAPS)

HSP 1 Score: 108 bits (271), Expect = 2.670e-23
Identity = 82/195 (42.05%), Postives = 106/195 (54.36%), Query Frame = 1
Query:  343 VQEQLRIRAQEEFDNVE---ALASPEGGKT--------LQPVLALVP-IITLRLQLDEVENNLKDP--RRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRE--RESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEA 879
            V E+LRI  Q+E DN++    LAS     T        LQP+L +   I T+   LD+ + N KD     F  A  I++   F K + K+ FNA++DNIYY  D DR N YL GGA P   Q+L YLLRNDV+ NVE L AE+ YL++E  R  AGE G E D    DL   +   K    KYL +V   E++ A
Sbjct:   66 VLEKLRIWNQDEADNIQYGGELASGSFKPTAFDQYVQLLQPILTVEQSIATIDGLLDKTKLNNKDDYVTAFKKADAIIEQPIFDKINFKKAFNAFADNIYYS-DPDRANLYLGGGAIPKPTQSLAYLLRNDVLTNVEDLRAELTYLMKELNRGGAGEGGVELD----DLYSIVKMAKDGMVKYLDLVPPKELEAA 255          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J809_9PHAE7.600e-19092.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLI5_ECTSI8.260e-14896.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZF78_9STRA1.770e-3548.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9WN96_9STRA6.160e-2837.73Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3Q034_9STRA2.210e-2736.61Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
B5Y3I0_PHATC1.900e-2637.27Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2RVH1_9STRA7.710e-2538.28Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1E7FHC2_9STRA4.520e-2438.78Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A448ZLZ7_9STRA6.600e-2434.82Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B8CC65_THAPS2.670e-2342.05Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1458contigE-siliculosus-1a_F_contig1458:10976..13894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size936
Model size1439
Exons3
Ec32 orthologEc-22_001090.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2E2DA@1,2S9M9@2759
Seed eggNOG ortholog2880.D8LLI5
Seed ortholog evalue1.6e-118
Seed ortholog score432.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1458.2680.1prot_E-siliculosus-1a_F_contig1458.2680.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1458 11461..13876 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927966.6004405-UTR-E-siliculosus-1a_F_contig1458:10975..114601622927966.6004405-UTR-E-siliculosus-1a_F_contig1458:10975..11460Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1458 10976..11460 -
1696318756.8582637-UTR-E-siliculosus-1a_F_contig1458:10975..114601696318756.8582637-UTR-E-siliculosus-1a_F_contig1458:10975..11460Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1458 10976..11460 -
1622927966.6453996-UTR-E-siliculosus-1a_F_contig1458:13876..138941622927966.6453996-UTR-E-siliculosus-1a_F_contig1458:13876..13894Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1458 13877..13894 -
1696318756.8987443-UTR-E-siliculosus-1a_F_contig1458:13876..138941696318756.8987443-UTR-E-siliculosus-1a_F_contig1458:13876..13894Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1458 13877..13894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927966.6142328-CDS-E-siliculosus-1a_F_contig1458:11460..119561622927966.6142328-CDS-E-siliculosus-1a_F_contig1458:11460..11956Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1458 11461..11956 -
1696318756.869288-CDS-E-siliculosus-1a_F_contig1458:11460..119561696318756.869288-CDS-E-siliculosus-1a_F_contig1458:11460..11956Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1458 11461..11956 -
1622927966.6249855-CDS-E-siliculosus-1a_F_contig1458:12738..128541622927966.6249855-CDS-E-siliculosus-1a_F_contig1458:12738..12854Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1458 12739..12854 -
1696318756.879599-CDS-E-siliculosus-1a_F_contig1458:12738..128541696318756.879599-CDS-E-siliculosus-1a_F_contig1458:12738..12854Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1458 12739..12854 -
1622927966.6354213-CDS-E-siliculosus-1a_F_contig1458:13552..138761622927966.6354213-CDS-E-siliculosus-1a_F_contig1458:13552..13876Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1458 13553..13876 -
1696318756.8893304-CDS-E-siliculosus-1a_F_contig1458:13552..138761696318756.8893304-CDS-E-siliculosus-1a_F_contig1458:13552..13876Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1458 13553..13876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1458.2680.1

>prot_E-siliculosus-1a_F_contig1458.2680.1 ID=prot_E-siliculosus-1a_F_contig1458.2680.1|Name=mRNA_E-siliculosus-1a_F_contig1458.2680.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=312bp
MPPLYQPWSAMLLSSLLVSAPFGSGVIGFSTPTLFRASSSAGGRTYARRS
RSWKQRPAGRKTSSIPSMSLPAEGGQTSRSRAIGLGMASLFSLAVAPTPG
LGLDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTLQPVLALVPIITLRL
QLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSD
RENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGED
GSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAKVALASKRK
GNAPAPVKTPQ*
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mRNA from alignment at E-siliculosus-1a_F_contig1458:10976..13894-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1458.2680.1 ID=mRNA_E-siliculosus-1a_F_contig1458.2680.1|Name=mRNA_E-siliculosus-1a_F_contig1458.2680.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2919bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1458:10976..13894- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCACCAACAACAAGACGGATGCCGCCATTATACCAGCCATGGTCGGCAAT GCTGCTTTCTAGCTTGCTCGTGTCCGCCCCTTTCGGTTCCGGAGTCATTG GGTTCAGCACGCCCACTCTGTTCCGAGCAAGCTCCTCAGCTGGAGGGCGC ACGTACGCCAGGCGGAGCAGGTCCTGGAAGCAACGCCCAGCAGGGCGAAA GACGTCGTCGATACCGAGTATGTCTTTGCCAGCGGAGGGTGGGCAAACGA GCAGGAGCCGGGCAATCGGACTTGGCATGGCATCTCTCTTCTCATTGGCC GTGGCCCCAACGCCTGGTCTTGGGCTTGACCCTGTCCGCAAGGTAGAGGT TGGAATCTCAACAGAAGCTTGTTTAGCCCGAACTTGGCCAGTGCTGTACA TGCCGTGGTTGCTCCCCAGGCACGGATCCAAGAACGAGTAGTACGCACCT ATAATAGGCGCAAGCCACGTAGCTTGATAAGTAAGCGCTGAGAAGTGGTT CATGCAACATCTTGCCAGCAGAACACGAACTGCTGTGGGTCAACTTTATT ACGGTGCATACTTGAAAACAGCAAGTGTAGAGGAACGCTAACCCTAACCG CAGCAGTAGACTACAGCACATTCCAATCGGCAACGGTGAGCCAGACCGCG GTCATCTTGGGAGGAAGTGCAACCTTTCGTGCCTGCCCAGGCATCTTCGG TTATGAAAACTATCGAAACGCGCCTGCTGTTGGAACCTCTCGCGCTGCCA GAACGCACGCTGGCCTTTAAGCCATCATGATTGTTGCCTCGTCTTTCGAC GATGGATTTGAAGTGCCTATTTGGGGTGGCATGTTTCCAGGTCGTATCAA TGAGCTGGGTGATGGCGACATACATAGAATGCCACCTGGAATGCTGGGCC AGAAAAGTACTTTTCCATCCCATCCCCATCCCATTCCCATGCGATTTCGA TGGGAGTACCATCCCACCACATCACGGGAACATTTCCCCTGCAGATCGTC ACACGGTGCCGGTTACTTGTGATCAATATTCATCCGCCAGGTACAAGAGC AACTACGAATCCGAGCACAGGAGGAGTTCGACAACGTAGAGGCTCTTGCT TCACCAGAGGGAGGCAAGACCCTCCAGCCGGTTCTTGCTCTGGTCCCTAT CATCACGTGAGCTTTGTACACCTTTCCAGCGTCTCCGACATGTCGTTGAG AAATCGTTGAACTGTTCGTCCTCAGCAGTTTGTAAGCGACCAATTGAGGC TACGACAGCGGTATGTGTCGACTTGGGCCGTAGATTTTGGACAGGTGGAG GCTTCGGGCTGCGTTATATGCAAGATCATGTCTGCAGTTGCCCGGTTTCT CCCCCCCCAAAACACTGGATAGTAGCTTGAAACACGAAATAGGCGTCCCC ACTAGAAGACTACGGAACGGGAGGTTTTGTAGAAATGCAAGAAGTTTTTT TTTTCTGCAGAGACGACCAAATGCGATTTGCTATCTTTCCCCGAGAGGAC TTCAAGACGGCGCCATGTGTGTTTAGGTTCGTGGTTCAAACAGACACGTT TTTTTTTTTTTCTGGATGTTGTTTAAGGTTGGTGTGGGTTCGTTGTTGTC GTTGCCATTGATGATCCATTTCTTGAGCCAAAGCAATAATCAATCCAGGC GCGCTTCCTCGCACAGGAGGCTTGAGCCTCGAAACAATCACTGCTTCTGG CCGAAAGGACTTTTTCGCATGGGGCAGTGGTAGAGGATACGACGTAGCGG TGTTTTAGCACACACTTGGTCTACACAGCCGGGAGAGTGTCACTGTCCAC TTATACGGTGTTTTTGTGAGGCTGACGCTGTTGCTGCGATACCGGTCGCC CTCTCACCCAACCATCCTGAAAGACTAGATTTAAAGTCTCATTGGCGCGT GTGCTTCTCTCGTTCCCCGCGCGCTTCAAACGACAAAGGCTTCGACTGCA ACTGGACGAGGTCGAGAACAATCTCAAAGACCCACGGCGGTTCGGAGCCG CGTTGACCATCCTGCAAGCTCAAGACTTCCAGAAGAAAGACATCAAGCGC GTGTTCAACGCATACAGCGACAACATCTACTACTTGCCGGATTCGGACCG GGAAAACAAGTACCTCCAGGGCGGGGCGACGCCTTCCAGCCGACAAACGC TGCAGTATCTCCTCCGAAACGACGTGATCGACAACGTCGAGGCTCTCACT GCGGAGATCGCCTATCTAATCAGAGAGAGGGAGTCCGCGGGCGAGGACGG GAGCGAGGCAGACACCGATGAGAAAGACTTGAGGATGTATTTGGGGAAGT GCAAGCAGAGCTTCGACAAGTACCTGGGCATGGTGCTGCAGAACGAGATC GACGAGGCAACAGACATGGCCAAGGTGGCCTTGGCCAGCAAGAGAAAGGG AAACGCACCCGCTCCGGTGAAAACGCCGCAGTAGCAAACTTGATAGCTAG CGAGAACGGGGGGAGTTTGTTCGATGCTTCTAGAAACCAGTAGAAATTTT CTGTATCGTTCTCTTCCCGTCTAGACGGTCTCCCGCCAATCCATCATGGG TAGCTATAGGGCGGTGGGATGTAGCCCTGTTGTGTTGATGGGTGTAGCTG TGCTGAGCGCATGTTGTCAACCTTCCAGTTGAACATAAAATATAAAAAGG CTACGACTAGGCGACAGGTTTGTTCGTGATATAGACTAATGTGGTACCTC GTCAACGATCTTGGAAGGTGAGTACCAACGGAGTAGCGTCCTGCACTTGA ACAGCTGAAAAAGTCTCTAGAAGACGTGTTGGAAATCTGTGTTATTGTGA AGACGGAAGAACAAGAGTACCAACCACAATGCGGCGCACCTGTCGTTCGA GAAAATAAAAAGGACAACGCATTGTTTGGATTCAAGCCGCAATTCTGCCA GACGCGACAAAGTCGAGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1458:10976..13894-

>mRNA_E-siliculosus-1a_F_contig1458.2680.1 ID=mRNA_E-siliculosus-1a_F_contig1458.2680.1|Name=mRNA_E-siliculosus-1a_F_contig1458.2680.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1872bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1458:10976..13894- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGCCATTATACCAGCCATGGTCGGCAATGCTGCTTTCTAGCTTGCT
CGTGTCCGCCCCTTTCGGTTCCGGAGTCATTGGGTTCAGCACGCCCACTC
TGTTCCGAGCAAGCTCCTCAGCTGGAGGGCGCACGTACGCCAGGCGGAGC
AGGTCCTGGAAGCAACGCCCAGCAGGGCGAAAGACGTCGTCGATACCGAG
TATGTCTTTGCCAGCGGAGGGTGGGCAAACGAGCAGGAGCCGGGCAATCG
GACTTGGCATGGCATCTCTCTTCTCATTGGCCGTGGCCCCAACGCCTGGT
CTTGGGCTTGACCCTGTCCGCAAGATGCCGCCATTATACCAGCCATGGTC
GGCAATGCTGCTTTCTAGCTTGCTCGTGTCCGCCCCTTTCGGTTCCGGAG
TCATTGGGTTCAGCACGCCCACTCTGTTCCGAGCAAGCTCCTCAGCTGGA
GGGCGCACGTACGCCAGGCGGAGCAGGTCCTGGAAGCAACGCCCAGCAGG
GCGAAAGACGTCGTCGATACCGAGTATGTCTTTGCCAGCGGAGGGTGGGC
AAACGAGCAGGAGCCGGGCAATCGGACTTGGCATGGCATCTCTCTTCTCA
TTGGCCGTGGCCCCAACGCCTGGTCTTGGGCTTGACCCTGTCCGCAAGGT
ACAAGAGCAACTACGAATCCGAGCACAGGAGGAGTTCGACAACGTAGAGG
CTCTTGCTTCACCAGAGGGAGGCAAGACCCTCCAGCCGGTTCTTGCTCTG
GTCCCTATCATCACGTACAAGAGCAACTACGAATCCGAGCACAGGAGGAG
TTCGACAACGTAGAGGCTCTTGCTTCACCAGAGGGAGGCAAGACCCTCCA
GCCGGTTCTTGCTCTGGTCCCTATCATCACGCTTCGACTGCAACTGGACG
AGGTCGAGAACAATCTCAAAGACCCACGGCGGTTCGGAGCCGCGTTGACC
ATCCTGCAAGCTCAAGACTTCCAGAAGAAAGACATCAAGCGCGTGTTCAA
CGCATACAGCGACAACATCTACTACTTGCCGGATTCGGACCGGGAAAACA
AGTACCTCCAGGGCGGGGCGACGCCTTCCAGCCGACAAACGCTGCAGTAT
CTCCTCCGAAACGACGTGATCGACAACGTCGAGGCTCTCACTGCGGAGAT
CGCCTATCTAATCAGAGAGAGGGAGTCCGCGGGCGAGGACGGGAGCGAGG
CAGACACCGATGAGAAAGACTTGAGGATGTATTTGGGGAAGTGCAAGCAG
AGCTTCGACAAGTACCTGGGCATGGTGCTGCAGAACGAGATCGACGAGGC
AACAGACATGGCCAAGGTGGCCTTGGCCAGCAAGAGAAAGGGAAACGCAC
CCGCTCCGGTGAAAACGCCGCAGTAGGCTTCGACTGCAACTGGACGAGGT
CGAGAACAATCTCAAAGACCCACGGCGGTTCGGAGCCGCGTTGACCATCC
TGCAAGCTCAAGACTTCCAGAAGAAAGACATCAAGCGCGTGTTCAACGCA
TACAGCGACAACATCTACTACTTGCCGGATTCGGACCGGGAAAACAAGTA
CCTCCAGGGCGGGGCGACGCCTTCCAGCCGACAAACGCTGCAGTATCTCC
TCCGAAACGACGTGATCGACAACGTCGAGGCTCTCACTGCGGAGATCGCC
TATCTAATCAGAGAGAGGGAGTCCGCGGGCGAGGACGGGAGCGAGGCAGA
CACCGATGAGAAAGACTTGAGGATGTATTTGGGGAAGTGCAAGCAGAGCT
TCGACAAGTACCTGGGCATGGTGCTGCAGAACGAGATCGACGAGGCAACA
GACATGGCCAAGGTGGCCTTGGCCAGCAAGAGAAAGGGAAACGCACCCGC
TCCGGTGAAAACGCCGCAGTAG
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