mRNA_E-siliculosus-1a_F_contig1458.2680.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: A0A6H5J809_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J809_9PHAE) HSP 1 Score: 540 bits (1390), Expect = 7.600e-190 Identity = 286/309 (92.56%), Postives = 292/309 (94.50%), Query Frame = 1
Query: 19 MPPLYQPWSAMLLSSLLVSAPFGSGVIGFSTPTLFRASSSAGGRTYARRSRSWKQRPAGRKTSSIPSMSLPAEGGQTSRSRAIGLGMASLFSLAVAPTPGLGLDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTLQPVLALVPIITLRLQLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAKVALASKRKGNAPAPVKT 945
MP LYQPWSAMLLSSLLVSAPFGSGVIGFSTP+LFRASSSAGGRTY RRSR WK PAGR TSSIPSMSLPAEGG TSR+RAIGLG+ASLFSLAVAPTPGL LDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTLQPVLALVPIITLRLQLDEVE+NLKDPR FGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEI+YLIRERE GE ADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAKVALA+KRKGNAP P KT
Sbjct: 1 MPLLYQPWSAMLLSSLLVSAPFGSGVIGFSTPSLFRASSSAGGRTYTRRSRFWKHCPAGRTTSSIPSMSLPAEGGPTSRNRAIGLGVASLFSLAVAPTPGLALDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTLQPVLALVPIITLRLQLDEVESNLKDPRLFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEISYLIREREVGGE----ADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAKVALANKRKGNAPTPAKT 305
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: D8LLI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI5_ECTSI) HSP 1 Score: 430 bits (1106), Expect = 8.260e-148 Identity = 221/228 (96.93%), Postives = 224/228 (98.25%), Query Frame = 1
Query: 220 MSLPAEGGQTSRSRAIGLGMASLFSLAVAPTPGLGLDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTLQPVLALVPIITLRLQLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAKVAL 903
MSLPAEGG TSRSRAIGLGMASLFSLAVAPTPGLGLDPVRKVQEQLRIRAQEEFDNVEALASPEGGKT+QPVLALVPIITLRLQLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERES GEDGSEADTDEKDLRMYLGKCKQ FDKYLGMVLQNEIDEATDMAK+ +
Sbjct: 1 MSLPAEGGPTSRSRAIGLGMASLFSLAVAPTPGLGLDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTIQPVLALVPIITLRLQLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESGGEDGSEADTDEKDLRMYLGKCKQGFDKYLGMVLQNEIDEATDMAKLVV 228
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: A0A835ZF78_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF78_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.770e-35 Identity = 81/168 (48.21%), Postives = 105/168 (62.50%), Query Frame = 1
Query: 397 LASPEGGKTLQPVLALVPIITLRLQLDEVENNLKDPRRFG--AALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAK 894
LA P G KTL PVLALVPI+ LR+ LD VE+ LK G AL +L + + K+IKR FN YSDNIY S R N YL GGA P+S++T QYLLRN+V+ +V+ LTAE+AYL+R+ G D DL YL K+SFD YL + ++D A ++A+
Sbjct: 3 LADPTGRKTLSPVLALVPIVRLRMGLDLVESWLKLNTTEGWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLRDGGGVG------GGDTADLYTYLSAAKKSFDDYLQLAPPLDLDGAAEVAR 164
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: A0A7R9WN96_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WN96_9STRA) HSP 1 Score: 123 bits (309), Expect = 6.160e-28 Identity = 83/220 (37.73%), Postives = 118/220 (53.64%), Query Frame = 1
Query: 262 AIGLGMASLFSLAVAPTPGLGLDPVRK-------VQEQLRIRAQEEFDNVEALASPEGGKT-------LQPVLALVPIITLRLQLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEA 879
A+GLG+ +A+ PTP D + K + EQ+RI Q E DN++ E G P L L+PI+ + +L +V+ ++D R+ ALTI+Q + ++K K+ FNAY DNIYY D DR N YL GGATP + Q+L YLLRNDV+ NVE L AE+ YL++ E ED L + + KYL +V E+++A
Sbjct: 118 AVGLGL-----IAMNPTPAQARDDLFKKNPLTNPMLEQIRIWEQAEADNIKYSGELEAGDAGNKGKVDAYPKL-LMPILEIDYELTQVKKLVRDESRWPDALTIMQQKKYEKIPFKKAFNAYGDNIYYS-DPDRANVYLGGGATPKTEQSLAYLLRNDVLTNVENLRAELEYLMKSGEKETED----------LYKFADIATNAMKKYLAIVPPGELEQA 320
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: A0A7S3Q034_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q034_9STRA) HSP 1 Score: 121 bits (304), Expect = 2.210e-27 Identity = 82/224 (36.61%), Postives = 121/224 (54.02%), Query Frame = 1
Query: 283 SLFSLAVAPTPGLGLDPVR---------------KVQEQLRIRAQEEFDNVE-----ALASPEGGKTLQPVLALVPIITLRLQLDEVENNLKDPRRFGAALT--ILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDM 888
S+ S + L L+PV+ KV E++RI Q E DN++ A SP G Q LVPI+ ++ + DE++ + P G A IL + ++K K+ FNA++DNIYY D DR N YL GGA P + Q++ YL+RNDV+ NVE L AE+ YLI+E ++ G+E +T+ DL +Y+ CK KYL +V E+ A ++
Sbjct: 96 SIMSAVLPAAVALALNPVKASARDELFKPNPLTNKVLEKIRILEQAEADNIQYGGELAPGSPIGRD--QYAKLLVPIMIIQKEFDELDTLVHMPNGDGLAQADIILSKKQYEKLQFKKTFNAFADNIYYS-DPDRANAYLGGGAVPKNEQSIAYLIRNDVLTNVENLQAEVTYLIKEIKA----GNEMETE--DLYLYVQTCKDGMVKYLDLVPPGEVKIAKEI 310
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: B5Y3I0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3I0_PHATC) HSP 1 Score: 117 bits (294), Expect = 1.900e-26 Identity = 82/220 (37.27%), Postives = 118/220 (53.64%), Query Frame = 1
Query: 280 ASLFSLAVAPTPGLGLDPV-------RKVQEQLRIRAQEEFDNVE-------ALASPEGGKTLQPVLALVPIITLRLQLDEVENNLKDPR-RFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAK 894
A + L ++ P L D V V E++RI Q E D+++ A +G P L LVPI+ + +LDEVE R + A IL+ + +QK + K+ FNAYSDNIYY D DR N YL GGATP + Q+L YLLRND++ NVEAL +EI YL++E + ED L +Y ++ +Y+G+V E+ +A ++ K
Sbjct: 58 AMISGLWLSNEPALAKDDVFRGNPLTNSVLEKIRIWEQAEADDLKYGGELERGDAGNKGKVEAYPRL-LVPILQMANELDEVERICLGSRDSWAQAQNILKQKKYQKIEFKKQFNAYSDNIYYS-DPDRANLYLGGGATPKTEQSLAYLLRNDILTNVEALQSEIEYLLKEPSESSED----------LVLYATTANRAMKRYMGIVPPGELVKARELIK 265
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: A0A7S2RVH1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RVH1_9STRA) HSP 1 Score: 114 bits (286), Expect = 7.710e-25 Identity = 80/209 (38.28%), Postives = 113/209 (54.07%), Query Frame = 1
Query: 292 SLAVAPTPGLGLDPVRK-------VQEQLRIRAQEEFDN-VEALASPEGGKTLQPVLA--LVPIITLRLQLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDM 888
SL +P L D + K V Q+RI Q+E DN V G ++ A LVPI+ + D +E L + A +IL ++K K++FNA++DNIYY D DR N YL GGA+P + Q++ YL RN+++ N+EAL AE+ YL++E ES GED KDL Y+ K KQ+ KYL +V E+ AT +
Sbjct: 119 SLLANTSPVLAKDEIYKSNPLTNSVLNQIRIWEQDEKDNLVYGGELAPGAPPVKDAYAQLLVPILQMAQDFDRMEELLVSGKWLEAKESILDKSCYEKIAFKKIFNAFADNIYYT-DPDRANVYLGGGASPKAVQSIAYLYRNEILTNLEALQAEVTYLLKE-ESKGEDT-------KDLFTYMSKAKQTMLKYLELVPPAEMKAATKL 318
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: A0A1E7FHC2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHC2_9STRA) HSP 1 Score: 110 bits (274), Expect = 4.520e-24 Identity = 76/196 (38.78%), Postives = 101/196 (51.53%), Query Frame = 1
Query: 343 VQEQLRIRAQEEFDNV------EALASPEGGKTLQPVLALVPIITLRLQLDEVE---------NNLKDPRR--FGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEA 879
V EQLRI Q + DN+ EA + GK LVPI+ + +L+E+ NN P + ALTILQ+ + K K+ FN Y DNIYY D DR N YL GGATP + Q++ YLLRND++ N+E L AE+ +LI+ E E +DL Y + KYL +V NE+ EA
Sbjct: 30 VLEQLRIWEQVDKDNMKYGGELEAGDAGNKGKVDAYPTLLVPILKIDQELNEINTLVHSGDNNNNSNKPSKDAMSKALTILQSPTYDKITFKKTFNKYGDNIYYS-DPDRANAYLGGGATPKNEQSIAYLLRNDILTNMENLRAELEFLIKTPEEENESV-------EDLYTYTAIVTSAMKKYLAIVPPNELKEA 217
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: A0A448ZLZ7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLZ7_9STRA) HSP 1 Score: 111 bits (277), Expect = 6.600e-24 Identity = 78/224 (34.82%), Postives = 110/224 (49.11%), Query Frame = 1
Query: 271 LGMASLFSLAVAPTPGLGLDPVRK-------VQEQLRIRAQEEFDNVE-------ALASPEGGKTLQPVLALVPIITLRLQLDEVEN-------NLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEA 879
+G ++ +L P+P D + + + EQ+RI Q E DN++ A +G P L LVPI+ + +L+E+ N AL ILQ ++K + K+ FN Y DNIYY D DR N YL GGATP + Q++ YLLRNDV+ N+E L AE+ YLI+ E+ ED L Y C + KYL V ++ EA
Sbjct: 64 VGAPTMIALTSIPSPADARDELFRPNPLTNPLLEQVRIMEQAEKDNIKYGGELERGDAGNKGKVDAYPSL-LVPILKIDKELNEIRTLVRSGGENKPSNEAMSQALAILQQPTYEKVNFKKTFNKYGDNIYYS-DPDRANLYLGGGATPKTEQSIAYLLRNDVLTNMENLRAELEYLIKSEENEIED----------LYSYADICTSAMKKYLAQVPPQQLKEA 275
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Match: B8CC65_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC65_THAPS) HSP 1 Score: 108 bits (271), Expect = 2.670e-23 Identity = 82/195 (42.05%), Postives = 106/195 (54.36%), Query Frame = 1
Query: 343 VQEQLRIRAQEEFDNVE---ALASPEGGKT--------LQPVLALVP-IITLRLQLDEVENNLKDP--RRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRE--RESAGEDGSEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEA 879
V E+LRI Q+E DN++ LAS T LQP+L + I T+ LD+ + N KD F A I++ F K + K+ FNA++DNIYY D DR N YL GGA P Q+L YLLRNDV+ NVE L AE+ YL++E R AGE G E D DL + K KYL +V E++ A
Sbjct: 66 VLEKLRIWNQDEADNIQYGGELASGSFKPTAFDQYVQLLQPILTVEQSIATIDGLLDKTKLNNKDDYVTAFKKADAIIEQPIFDKINFKKAFNAFADNIYYS-DPDRANLYLGGGAIPKPTQSLAYLLRNDVLTNVEDLRAELTYLMKELNRGGAGEGGVELD----DLYSIVKMAKDGMVKYLDLVPPKELEAA 255 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1458.2680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1458.2680.1 >prot_E-siliculosus-1a_F_contig1458.2680.1 ID=prot_E-siliculosus-1a_F_contig1458.2680.1|Name=mRNA_E-siliculosus-1a_F_contig1458.2680.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=312bp MPPLYQPWSAMLLSSLLVSAPFGSGVIGFSTPTLFRASSSAGGRTYARRSback to top mRNA from alignment at E-siliculosus-1a_F_contig1458:10976..13894- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1458.2680.1 ID=mRNA_E-siliculosus-1a_F_contig1458.2680.1|Name=mRNA_E-siliculosus-1a_F_contig1458.2680.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2919bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1458:10976..13894- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1458:10976..13894- >mRNA_E-siliculosus-1a_F_contig1458.2680.1 ID=mRNA_E-siliculosus-1a_F_contig1458.2680.1|Name=mRNA_E-siliculosus-1a_F_contig1458.2680.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1872bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1458:10976..13894- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |