prot_E-siliculosus-1a_F_contig1032.265.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1032.265.1
Unique Nameprot_E-siliculosus-1a_F_contig1032.265.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length569
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1032.265.1 vs. uniprot
Match: A0A6H5JL40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL40_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.780e-24
Identity = 70/112 (62.50%), Postives = 76/112 (67.86%), Query Frame = 0 
Query:  309 GSLVATLPSAGRERRIERTCESSTMRCSSSGRGVGFCGRSRLVALPPPTRVRTVTWDR-----------------------PVGELVKGVAWPRGLTRITFGDGFSQSLSLV 397
            GS+VATL  AGRERRIER+  S+T+RCSS+      CGRSR V LPPPTRVRTVTWDR                       PVGELVKGVAWP GLTRITFGDGF+QSLSLV
Sbjct:    3 GSMVATLSLAGRERRIERS-GSATVRCSSN-----VCGRSRRVVLPPPTRVRTVTWDRCLPRFLVLLESAVVMGWRRWCPRPVGELVKGVAWPPGLTRITFGDGFNQSLSLV 108
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1032.265.1 vs. uniprot
Match: D8LHF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF1_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.570e-10
Identity = 46/77 (59.74%), Postives = 51/77 (66.23%), Query Frame = 0 
Query:  322 RRIERTCESSTMRCSS-SGRGVGFCGRSRLVALPPPTRVRTVTWDRPVGELVKGVAWPRGLTRITFGDGFSQSLSLV 397
            R + + C SS    +S S  GVG  G    + +P     RT   DRPVGELVKGVAWPRGLTRITFGDGFSQSLSLV
Sbjct:   36 RHLGQACSSSLRAPASLSDVGVGV-GDGFALVVPKVYSQRT---DRPVGELVKGVAWPRGLTRITFGDGFSQSLSLV 108
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1032.265.1 vs. uniprot
Match: A0A6H5L639_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L639_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 9.350e-5
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0 
Query:   52 LRVVVLSGWIPPGRMKQLQLASVTICRDCRDGDPWHVRVSENTPRHLW 99
            LR+V+LS  +P   +KQLQLAS +IC DCR+   +HV V+  TPR LW
Sbjct:  104 LRIVLLSELVPVTIIKQLQLASSSICGDCRELTEFHVNVNSRTPRRLW 151
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1032.265.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JL40_9PHAE2.780e-2462.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHF1_ECTSI4.570e-1059.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L639_9PHAE9.350e-554.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 376..568
NoneNo IPR availablePANTHERPTHR32134:SF86coord: 376..568

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1032contigE-siliculosus-1a_F_contig1032:19836..24960 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1032.265.1mRNA_E-siliculosus-1a_F_contig1032.265.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1032 19836..24981 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1032.265.1 ID=prot_E-siliculosus-1a_F_contig1032.265.1|Name=mRNA_E-siliculosus-1a_F_contig1032.265.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=569bp
MIDQSDAVPSVGAETPTTMVGQSETAPTGAGSAAESAGAGAQQRLASVQK
GLRVVVLSGWIPPGRMKQLQLASVTICRDCRDGDPWHVRVSENTPRHLWC
RLEQRAEQSPEGYPEGSPERRLAEQRQRPFRENGQADDHQQPEGGEVGVE
GVSGGEGGGGVGGGGDVAVLSDARDLEHAWRGVMVGGRRKGGAGWHGNVG
ADSSARKEALETTEAGTGTSGVSSVTDSVFGGIGASSSGGSAGRTTNSAR
SNDECSSSSSSNSSSGSGSGSGSGGGGSTSRGGIPINKAAPSAAATAAST
LGHANTTRGSLVATLPSAGRERRIERTCESSTMRCSSSGRGVGFCGRSRL
VALPPPTRVRTVTWDRPVGELVKGVAWPRGLTRITFGDGFSQSLSLVRWP
PGLEEVNFGRDFNEVIDVTTWPAGLKRMTFGTKWNQPLDYVGWPEGLEEL
VLGSSFDQPVSGVVFPKGLRLLSFGMHFNKSVDGMSWPDGLREISFGCAF
NSPIDQVAWPTALQRLSFGHSFDRPVHQVSWPPRLQRLAFGNDFNRPVSG
LSWPEGLEELVFGEMFDQA
back to top